ID: uc003mbo.1_intron_14_0_chr5_171534857_r.5p
GENE: STK10(4)
chr5:171544285-171544534-


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(3)
CERVIX 		(6)
HEART 		(3)
LIVER 		(2)
OTHER 		(36)
SKIN 		(1)
XRN.ip

Sense strand
TCTGAAAGCTGGCAACGTGCTGATGACCCTCGAGGGAGACATCAGGCTGGGTAAGGGGCTCAGGGTGGGAAAGGTGGAGCCACAGGGTGTCTGCCTGGGGGTGTTGGCCTGGCCTCTGCAGGCCAGTGGGAGTGTGGACCTCATGGGGGTGTGGGGTCCTCACGCCTACGCCCTCTTGGCATGTCAGCAGTTCTCCCCTTCCTACTCTTGATTCTTTGCTTTTTTTCAATTATTTTATTTTATTTTATTT
..............................................................................(((.((((.......))))..)))..(((((((.......)))))))..(((.(((.(((((((((......))))))))).))).)))...................................................................................
..........................................................................75..........................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040036(GSM532921)
G243N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.................................................................................................................................................GGGGTGTGGGGTCCTTCC.......................................................................................1816.000.002.00---3.00--1.00-1.001.00-----1.001.001.00-1.00--1.00------1.00-----1.001.00---------------------------
.................................................................................................................................................GGGGTGTGGGGTCCTTCCC......................................................................................1912.000.00----1.00----1.00--1.00--2.001.00-----1.00-1.001.00---------1.00--1.001.00-------------------------
....................................................................................................................................................................................................................................ATTATTTTATTTTATTTTATCG227.000.00-3.003.001.00-------------------------------------------------------------
................................................................................................................................................GGGGGTGTGGGGTCCTTCC.......................................................................................1955.403.201.00---0.60--1.00--0.40----------0.20-0.200.200.20-0.20---------------------0.20---0.400.40----0.20---0.20-
................................................................................................................................................GGGGGTGTGGGGTCCTC.........................................................................................1724.004.003.00---------0.50------------------------------------0.50-----------------
................................................................................................................................................GGGGGTGTGGGGTCCTCC........................................................................................1823.504.002.50------0.50-------------------0.50-------------------------------------
................................................................................................................................................GGGGGTGTGGGGTCCT..........................................................................................1653.203.201.60---------0.20---------------0.20----------------0.40------0.40-0.40------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTTTATTTTATTTTTTTG323.000.00-3.00---------------------------------------------------------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTTTATTTTTTTG.....273.000.00-2.00---1.00-----------------------------------------------------------
.................................................................................................................................................................................................................................TCAATTATTTTATTTTATTTTATTTTG273.000.00--2.001.00-------------------------------------------------------------
................................................................................................................................................GGGGGTGTGGGGTCCTT.........................................................................................1752.803.200.60------0.20--0.20-------0.20-0.20------------------------------0.40----0.200.200.20--0.200.20--
................................................................................................................................................GGGGGTGTGGGGTCCTTC........................................................................................1852.403.200.60---0.20--0.40------------------------------------0.40---0.40-----------0.20---0.20
................................................................................................................................................GGGGGTGTGGGGTCCTTCCC......................................................................................2052.003.20----0.20----0.40----------0.20-0.20----0.40---------------0.20-----0.20-----0.20---------
..................................................................................................................................................................................................................................CAATTATTTTATTTTATTTTATTTTTTG281.000.00---1.00-------------------------------------------------------------
..............................CGAGGGAGACATCAGGCT..........................................................................................................................................................................................................1811.001.00-----------------1.00-----------------------------------------------
....................................................................................................................................................................................................................................ATTATTTTATTTTATTTTATTCTAG251.000.00------1.00----------------------------------------------------------
.............................................................................................................................................CATGGGGGTGTGGGGCAGC..........................................................................................191.000.00-----------1.00-----------------------------------------------------
...............................................................................CCACAGGGTGTCTGCCTGGGG......................................................................................................................................................2111.001.00----------------------------------1.00------------------------------
..................................................................................................................................................................................................................................CAATTATTTTATTTTATTCA....201.000.00------------1.00----------------------------------------------------
...............................................................................................................GCCTCTGCAGGCCAGTGGAG.......................................................................................................................201.000.00--------1.00--------------------------------------------------------
.................................GGGAGACATCAGGCTGGGTAAGGGG................................................................................................................................................................................................2511.001.00----------------------------------------1.00------------------------
...............................................................................................................................GGGAGTGTGGACCTCTG..........................................................................................................171.000.00--------------------------1.00--------------------------------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTTTA.............1911.001.00--1.00--------------------------------------------------------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTCAGA............201.000.00------1.00----------------------------------------------------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTTTTTTG..........221.000.00-1.00---------------------------------------------------------------
...........................................................................................................................................................................................................................TTTTTTTCAATTATTTTAAATG.........221.000.00-----1.00-----------------------------------------------------------
................GTGCTGATGACCCTCGAGGGAGAC..................................................................................................................................................................................................................2411.001.00-------------------1.00---------------------------------------------
....................................................................................................................................................................................................................................ATTATTTTATTTTATTTTATTTCTTG261.000.00---1.00-------------------------------------------------------------
..................................................................................................................................................................................................................................CAATTATTTTATTTTATTTAG...211.000.00-1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................CAATTATTTTATTTTATTTTATTTTTAG281.000.00--1.00--------------------------------------------------------------
....................................................................................................................................................................................................................................ATTATTTTATTTTATTTTATTCGAG251.000.00--------------1.00--------------------------------------------------
.................................................................................................GGGGTGTTGGCCTGGGGA.......................................................................................................................................181.000.00-------------1.00---------------------------------------------------
....................................................................................................................................................................................................................................ATTATTTTATTTTATTTTATTTCTAT261.000.00---1.00-------------------------------------------------------------
...................................................................................................................................................................................................................................AATTATTTTATTTTATTTTATAG231.000.00--1.00--------------------------------------------------------------
...............................................................................................................................................TGGGGGTGTGGGGTCCATCC.......................................................................................201.000.00--------1.00--------------------------------------------------------
..................................................................................................................................................................................................................................CAATTATTTTATTTTATTTTATTTTAG271.000.00-----1.00-----------------------------------------------------------
..................................................................................................................................................................................................................ATTCTTTGCTTTTTTTCTTAG...................211.000.00--------------1.00--------------------------------------------------
................................AGGGAGACATCAGGCTGG........................................................................................................................................................................................................1821.001.00---------------------------------------------0.500.50------------------
.........TGGCAACGTGCTGATGAC...............................................................................................................................................................................................................................1811.001.00-----------------------------1.00-----------------------------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTTTAAATG.........2311.001.00------1.00----------------------------------------------------------
......................................................................................................................................................................................................................TTTGCTTTTTTTCAACGG..................181.000.00------1.00----------------------------------------------------------
...............................................................................................................................................................................................................................TTTCAATTATTTTATTTTATTTAG...241.000.00-----1.00-----------------------------------------------------------
......................ATGACCCTCGAGGGAGACATCAGGCTGG........................................................................................................................................................................................................2811.001.00----------------------------1.00------------------------------------
................................................................................................................................................GGGGGTGTGGGGTCCTCCC.......................................................................................1921.004.00-------------------------------1.00---------------------------------
..........................................................................................................................................................................................................................CTTTTTTTCAATTATTTTATTTTA........2411.001.00---1.00-------------------------------------------------------------
................................................................................................................................................GGGGGTGTGGGGTCCTCCCCC.....................................................................................2120.504.00-------------------0.50---------------------------------------------
................................................................................................................................................GGGGGTGTGGGGTCCTCCCCG.....................................................................................2120.504.00------------------0.50----------------------------------------------
.................................................................................................................................................GGGGTGTGGGGTCCTC.........................................................................................1680.250.250.25----------------------------------------------------------------
.................................................................................................................................................GGGGTGTGGGGTCCTCCCC......................................................................................1980.120.25--------------------------------------------0.12--------------------
.................................................................................................................................................GGGGTGTGGGGTCCTCCC.......................................................................................1880.120.25-------------------0.12---------------------------------------------

Antisense strand
TCTGAAAGCTGGCAACGTGCTGATGACCCTCGAGGGAGACATCAGGCTGGGTAAGGGGCTCAGGGTGGGAAAGGTGGAGCCACAGGGTGTCTGCCTGGGGGTGTTGGCCTGGCCTCTGCAGGCCAGTGGGAGTGTGGACCTCATGGGGGTGTGGGGTCCTCACGCCTACGCCCTCTTGGCATGTCAGCAGTTCTCCCCTTCCTACTCTTGATTCTTTGCTTTTTTTCAATTATTTTATTTTATTTTATTT
..............................................................................(((.((((.......))))..)))..(((((((.......)))))))..(((.(((.(((((((((......))))))))).))).)))...................................................................................
..........................................................................75..........................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040036(GSM532921)
G243N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040039(GSM532924)
G531T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.......................................................................................................................................................................................TCAGCAGTTCTCCCCTGCAT............................................... 201.000.00-----------------------------------------1.00-----------------------
.........................................................TCCACCTTTCCCACCCTGAGC............................................................................................................................................................................ 2111.001.00---------------------------------1.00-------------------------------
...........................................................................................................CCTGGCCTCTGCAGGGTGC............................................................................................................................ 191.000.00-------------1.00---------------------------------------------------
..............................................................GGGTGGGAAAGGTGGAGCC......................................................................................................................................................................... 191.000.00--------------------------------1.00--------------------------------
.............................................................................................................................GTGGGAGTGTGGACCAATA.......................................................................................................... 191.000.00--------1.00--------------------------------------------------------
.......................................................................................................................................GGACCTCATGGGGGTCTC................................................................................................. 181.000.00------------------------------------------1.00----------------------
................................................................................................................................................................................................AAGAGTAGGAAGGGGAG......................................... 1750.200.20-----------0.20-----------------------------------------------------