ID: uc003lzh.2_intron_8_0_chr5_162900564_f
GENE: (9)
chr5:162900514-162901112+


(1)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(8)
CELL-LINE 		(13)
CERVIX 		(1)
HEART 		(2)
LIVER 		(5)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
ACAAGTAGAAGATCTAAATGTGAAATGTCAGCTGCTTGAAAAAGAAAAAGGTATTACAGTGTTTTATAGTTACTTTGTTTAGATAAGTGTTACATACAACATTTAGGAAAAATACTACTATGCTAAAACAACCTTTTAAATATAATTAGCTATACTAACATTTTAAATATAATTAGCTATATAGCTATACAACAGCAAAAACCTGTACTGCATTTTAGAATATTTTACTCTTATAATGTTTGTTTTCTGTTTATTTCAATACAGCATATTACCTGTCTTGATTGAAATATATACAGTCATATAATTCTTGACTTTTCCACTAGGTGGCTGTGTAACAATCAGTAGATAACACAGAACAAGATTTGTGGGTTTTATTATTTAGCACATAGTATATATTACATGGAGTAATGATACAAAGTTCACAGTTTTGTTTTCTTCTTTGGAAATACCATGCTAAAAGCAGTGTAATGGAATATTATGGGAGTCCAGGTTTCTCAGTCTTAATGTTCTTATCTAATTCCAGTATTCTTGATGTTTTGCGTTTTCTAGAAGACCATGTCAACAGGAATAGAGAACACAACGAAAATCTAAATGCAGAG
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................((((..((((((.......(((((((....(((((..((((....((.......)).....)))).))))).)))))))...)))))))))).........................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................450................................................................................................549................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040018(GSM532903)
G701N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR189785TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR189787SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGAAT.................................................................................................1919.000.007.001.002.002.001.001.001.00----1.00----1.00-----1.00----1.00--------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGTCT.................................................................................................1914.000.006.001.003.001.001.002.00------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGTAT.................................................................................................1912.000.002.001.002.00-1.00-1.002.002.00-----1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGCAT.................................................................................................195.000.00---1.001.001.001.00-----------1.00-----------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGACT.................................................................................................194.000.002.001.00-----------------------------1.00----------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGCCT.................................................................................................192.000.001.00---1.00-------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGATT.................................................................................................192.000.001.00-1.00---------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGTGT.................................................................................................192.000.001.001.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGACA.................................................................................................192.000.001.00------1.00----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGAA..................................................................................................182.000.00--------1.00------1.00--------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGAGT.................................................................................................192.000.00-1.00-------------1.00--------------------------
............................................................................................................................................................................................................................................TGTTTGTTTTCTGTTTATACC......................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------1.00------------------
.............................................................................................................................................................................................................................................................................................................................CACTAGGTGGCTGTGATTA.......................................................................................................................................................................................................................................................................191.000.00--------------------------------1.00---------
..............................................................................................................................................................................................................................................TTTGTTTTCTGTTTAGGC.......................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------1.00-----
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGCACT.................................................................................................191.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGTCGT.................................................................................................191.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGTCTTTG...............................................................................................211.000.00-----------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGCTGT.................................................................................................191.000.00---1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGTA..................................................................................................181.000.00---1.00--------------------------------------
..AAGTAGAAGATCTAAATGTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------1.00-------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTTGTTTTCTCGCA...............................................................................................................................................................191.000.00-------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATGTCAACAGGAATAGAGAACAC.....................2611.001.00--------------------1.00---------------------
........................ATGTCAGCTGCTTGAAAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGAATAGAGAACTCTG...................211.000.00------------------------1.00-----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGGGT.................................................................................................191.000.00--------------1.00---------------------------
........................................................CAGTGTTTTATAGTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--------------------------1.00---------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGAATAGAGAACA......................1811.001.00------------1.00-----------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAATAGAGAACACAAC..................2011.001.00-------------------------1.00----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGCAG.................................................................................................191.000.00---1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................ATATATACAGTCATATGTG......................................................................................................................................................................................................................................................................................................191.000.00---------1.00--------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACAACGAAAATAGAC........191.000.00---------1.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGAAC.................................................................................................191.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGTAG.................................................................................................191.000.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGATG.................................................................................................191.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGGCTT.................................................................................................191.000.001.00-----------------------------------------
....................................TGAAAAAGAAAAAGGTAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------1.00-------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGTAAT.................................................................................................191.000.00-1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTTTCTCAGTACAA................................................................................................201.000.00-----------1.00------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATCTAATTCCAG............................................................................1720.500.50-------------------------------------0.50----
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATAGAGAACACA....................1670.140.14----------------------------------------0.14-

Antisense strand
ACAAGTAGAAGATCTAAATGTGAAATGTCAGCTGCTTGAAAAAGAAAAAGGTATTACAGTGTTTTATAGTTACTTTGTTTAGATAAGTGTTACATACAACATTTAGGAAAAATACTACTATGCTAAAACAACCTTTTAAATATAATTAGCTATACTAACATTTTAAATATAATTAGCTATATAGCTATACAACAGCAAAAACCTGTACTGCATTTTAGAATATTTTACTCTTATAATGTTTGTTTTCTGTTTATTTCAATACAGCATATTACCTGTCTTGATTGAAATATATACAGTCATATAATTCTTGACTTTTCCACTAGGTGGCTGTGTAACAATCAGTAGATAACACAGAACAAGATTTGTGGGTTTTATTATTTAGCACATAGTATATATTACATGGAGTAATGATACAAAGTTCACAGTTTTGTTTTCTTCTTTGGAAATACCATGCTAAAAGCAGTGTAATGGAATATTATGGGAGTCCAGGTTTCTCAGTCTTAATGTTCTTATCTAATTCCAGTATTCTTGATGTTTTGCGTTTTCTAGAAGACCATGTCAACAGGAATAGAGAACACAACGAAAATCTAAATGCAGAG
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................((((..((((((.......(((((((....(((((..((((....((.......)).....)))).))))).)))))))...)))))))))).........................................................
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................450................................................................................................549................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040018(GSM532903)
G701N. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR189785TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		GSM532876(GSM532876)
G547T. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR189787SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
.............CTAAATGTGAAATGTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------------------1.00-----------
.................................................................ATAGTTACTTTGTTTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00---------------------1.00--------------------
......................................AAAAAGAAAAAGGTATTATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00----------1.00-------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATACAAAGTTTCTG............................................................................................................................................................................... 191.000.00---------------------------------1.00--------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTTGATGTTTATTG.......................................................... 191.000.00----------1.00-------------------------------
...........................................................................................................................................................................................TACAACAGCAAAAACCC........................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-----------------1.00------------------------
...................................TTGAAAAAGAAAAAGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00-----------------------------------1.00------
.......................................AAAAGAAAAAGGTATTACAGTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00-------------1.00----------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCAACAGGAATAGC........................... 191.000.00-------------------1.00----------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACTGTGAACTTTG......................................................................................................................................................................... 1720.500.50--------------------------------------0.50---
.............................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTGTGAACTTTG.......................................................................................................................................................................... 1650.200.20---------------------------------------0.20--
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACTGAGAAACCTG................................................................................................. 1690.110.11-----------------------------------------0.11