ID: uc003lyb.1_intron_1_0_chr5_159682716_r.3p
GENE: CCNJL(5)
chr5:159682666-159682915-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(20)
CELL-LINE 		(8)
CERVIX 		(1)
HEART 		(3)
LIVER 		(2)
OTHER 		(17)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCAACAAAAAATAAATCCCAGACCAAGAGCCAAGGTTAAGATTCAAAAATGGAACTTCACAGTTTCTAATTTTCCATCCTATTTGTAGGGCAGCGATGAAAAGCCTTGAAAGCGATTCATTTGTCCATCCATTCTCAGGGTGGGCCTGGGATTCCAAGGGGAGGATTTGGATGCTGACTCCCTCCGTGGCTTTCTTTCAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCTGCGGCCTGTGTT
..................................................((((((....))))))..........(((((....)))))..((........))..................................................................................................................................................
..................................................51.....................................................106..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029127(GSM416756)
A549. (cell line)		SRR189782SRR029131(GSM416760)
MCF7. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM532878(GSM532878)
G691T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR029129(GSM416758)
SW480. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM532875(GSM532875)
G547N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................TTCACAGTTTCTAATTTCTTC..............................................................................................................................................................................21811.500.126.750.50-0.500.121.380.25----0.50-------------0.25-------0.38----0.12---0.120.12-0.38-----0.12-----------
.......................................................TTCACAGTTTCTAATTTCTT...............................................................................................................................................................................2087.250.124.880.380.380.500.250.120.50-------------------------------------------0.12----0.12-------
.......................................................TTCACAGTTTCTAATTTCCTC..............................................................................................................................................................................2184.750.120.250.75-0.620.620.120.38----0.50-0.12-0.12---------0.12-------0.25----0.12--0.250.250.120.12------------------
.......................................................TTCACAGTTTCTAATTTCTGC..............................................................................................................................................................................2184.620.121.381.120.380.500.120.25-----0.12-------------------------0.120.12---------0.12----0.120.12-----0.12--
..................CAGACCAAGAGCCAAAAA......................................................................................................................................................................................................................184.000.00---------2.001.00-----------------1.00----------------------------------
.......................................................TTCACAGTTTCTAATTTCCG...............................................................................................................................................................................2083.620.12-1.250.121.000.50---------------------------------------0.25-0.12--0.12--0.12---0.12------
.......................................................TTCACAGTTTCTAATTTCCGC..............................................................................................................................................................................2183.620.120.121.00-0.88-0.12-----0.12-0.12-----------0.50-------0.12---0.12---0.12-0.12---------------0.12-0.12-
......AAAAATAAATCCCAGCTAG.................................................................................................................................................................................................................................192.000.00-------2.00-------------------------------------------------------
..................CAGACCAAGAGCCAAAA.......................................................................................................................................................................................................................172.000.00--------1.00---------1.00--------------------------------------------
.......................................................TTCACAGTTTCTAATTTTC................................................................................................................................................................................1912.002.00-1.001.00------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTTCTT..............................................................................................................................................................................2112.002.00-----1.00-------1.00-------------------------------------------------
........................................................................................................................................AGGGTGGGCCTGGGA...................................................................................................1502.002.00----------------------1.00------1.00---------------------------------
.......................................................TTCACAGTTTCTAATTTTTT...............................................................................................................................................................................202.000.001.00----1.00---------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTTCT...............................................................................................................................................................................2012.002.00----1.00-1.00--------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCTG...............................................................................................................................................................................2081.500.12-0.620.500.25-------------------------------------------0.12---------------
.......................................................TTCACAGTTTCTAATTTCTTT..............................................................................................................................................................................2181.380.120.50---0.38-0.25----0.25---------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCTTA..............................................................................................................................................................................2181.380.121.38--------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTTCG...............................................................................................................................................................................2011.002.00--1.00------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTGCCG...............................................................................................................................................................................201.000.00--1.00------------------------------------------------------------
...........TAAATCCCAGACCAAAAAA............................................................................................................................................................................................................................191.000.00------------------------1.00--------------------------------------
.......................................................TTCACAGTTTCTAATTCTG................................................................................................................................................................................191.000.001.00--------------------------------------------------------------
.....................................................................................TAGGGCAGCGATGAAAAGACAT...............................................................................................................................................221.000.00---------------------1.00-----------------------------------------
.......................................................TTCACAGTTTCTAATTTTCTA..............................................................................................................................................................................2111.002.00----1.00----------------------------------------------------------
.......................................................TTCACAGTTTCTAATGTAC................................................................................................................................................................................191.000.00--1.00------------------------------------------------------------
.......................................................TTCACAGTTTCTAATGTCC................................................................................................................................................................................191.000.00--1.00------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTGTCG...............................................................................................................................................................................201.000.00-1.00-------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTTTTC..............................................................................................................................................................................211.000.00---1.00-----------------------------------------------------------
......................................................CTTCACAGTTTCTAATTTCCG...............................................................................................................................................................................211.000.00--1.00------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTTCGT..............................................................................................................................................................................2111.002.00-1.00-------------------------------------------------------------
..........................................................................................................................................................................................................................................CGCTGCGGCCTGTGTGTTT191.000.00-------------------1.00-------------------------------------------
.......................................................TTCACAGTTTCTAATTTTCTCA.............................................................................................................................................................................2211.002.00------1.00--------------------------------------------------------
......................................................................................................................................TCAGGGTGGGCCTGGGGCCC................................................................................................201.000.00---------------------------1.00-----------------------------------
........................................................................................................................................................................................................ATCACATATTCTACAAATCCC.............................211.000.00-------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................TCCAGCCTTCTGTGGTCGCTGCGG........2411.001.00--------------------------------1.00------------------------------
.......................................................TTCACAGTTTCTAATTTCCTT..............................................................................................................................................................................2180.750.12-0.38--0.38----------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCT................................................................................................................................................................................1980.750.12-0.12--0.120.120.12----0.12-0.12-------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCCGT..............................................................................................................................................................................2180.620.12-0.12-0.12--0.12---------------------------------------0.120.12---------------
.......................................................TTCACAGTTTCTAATTTCTGA..............................................................................................................................................................................2180.380.120.38--------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCTGT..............................................................................................................................................................................2180.250.12--0.12------------------------------------------------------0.12-----
.......................................................TTCACAGTTTCTAATTTCATC..............................................................................................................................................................................2180.250.12-------------0.12------------------------0.12------------------------
.......................................................TTCACAGTTTCTAATTTCCC...............................................................................................................................................................................2080.250.12-0.120.12------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTGTTG..............................................................................................................................................................................2180.250.12-0.12--0.12----------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTGT................................................................................................................................................................................1980.250.12------0.25--------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCCGG..............................................................................................................................................................................2180.250.12-------------------------------------0.12---0.12---------------------
.......................................................TTCACAGTTTCTAATTTCCGA..............................................................................................................................................................................2180.250.12-0.25-------------------------------------------------------------
................................................................................ATTTGTAGGGCAGCG...........................................................................................................................................................1540.250.25---------------0.25-----------------------------------------------
.......................................................TTCACAGTTTCTAATTTGTTC..............................................................................................................................................................................2180.120.12----0.12----------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCGC...............................................................................................................................................................................2080.120.12---0.12-----------------------------------------------------------
.......................................................TTCACAGTTTCTAATTT..................................................................................................................................................................................1780.120.12----------------------------------------------------------0.12----
.......................................................TTCACAGTTTCTAATTTCCCC..............................................................................................................................................................................2180.120.12-------------------------0.12-------------------------------------
.......................................................TTCACAGTTTCTAATTTACTT..............................................................................................................................................................................2180.120.12-------------------------------------0.12-------------------------
.......................................................TTCACAGTTTCTAATTTCTA...............................................................................................................................................................................2080.120.12--0.12------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCGTC..............................................................................................................................................................................2180.120.12-----0.12---------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCAGT..............................................................................................................................................................................2180.120.12-0.12-------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTATG...............................................................................................................................................................................2080.120.12-------------------------------------------0.12-------------------
.......................................................TTCACAGTTTCTAATTTCTC...............................................................................................................................................................................2080.120.12--0.12------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTAA................................................................................................................................................................................1980.120.12----0.12----------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTAAAA..............................................................................................................................................................................2180.120.12--------------------------------------------------------------0.12
.......................................................TTCACAGTTTCTAATTTCGG...............................................................................................................................................................................2080.120.12--0.12------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCTCC..............................................................................................................................................................................2180.120.12---0.12-----------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTGCG...............................................................................................................................................................................2080.120.12--0.12------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCATA..............................................................................................................................................................................2180.120.12------------------------------------------0.12--------------------
.......................................................TTCACAGTTTCTAATTTCAG...............................................................................................................................................................................2080.120.12-0.12-------------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTCCA...............................................................................................................................................................................2080.120.12------0.12--------------------------------------------------------
.......................................................TTCACAGTTTCTAATTTAAA...............................................................................................................................................................................2080.120.12------------------------------------------------0.12--------------

Antisense strand
TCAACAAAAAATAAATCCCAGACCAAGAGCCAAGGTTAAGATTCAAAAATGGAACTTCACAGTTTCTAATTTTCCATCCTATTTGTAGGGCAGCGATGAAAAGCCTTGAAAGCGATTCATTTGTCCATCCATTCTCAGGGTGGGCCTGGGATTCCAAGGGGAGGATTTGGATGCTGACTCCCTCCGTGGCTTTCTTTCAGATCACATATTCTACAAATTCCAGCCTTCTGTGGTCGCTGCGGCCTGTGTT
..................................................((((((....))))))..........(((((....)))))..((........))..................................................................................................................................................
..................................................51.....................................................106..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029127(GSM416756)
A549. (cell line)		SRR189782SRR029131(GSM416760)
MCF7. (cell line)		SRR040043(GSM532928)
G428T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM532878(GSM532878)
G691T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR029129(GSM416758)
SW480. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM532875(GSM532875)
G547N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................CCATCCATTCTCAGGCGCT........................................................................................................... 194.000.00----------1.00-----1.00------1.00-------1.00-------------------------------
............................................................................................................................CCATCCATTCTCAGGGCG............................................................................................................ 182.500.00--------------1.50-------------------0.500.50---------------------------
............................................................................................................................CCATCCATTCTCAGGGCGCT.......................................................................................................... 202.000.00------------1.50---------------------------0.50----------------------
............................................................................................................................CCATCCATTCTCAGGGC............................................................................................................. 171.500.00--------------------------1.00------------0.50-----------------------
..................................................................................................................ATTCATTTGTCCATCTCTG..................................................................................................................... 191.000.00--------1.00------------------------------------------------------
.............................................................................................................................................................................................................ATATTCTACAAATTCAACA.......................... 191.000.001.00--------------------------------------------------------------
............................................................................................................................CCATCCATTCTCAGGCGC............................................................................................................ 181.000.00--------------------1.00------------------------------------------
............................................................................................................................CCATCCATTCTCAGGGTGC........................................................................................................... 191.000.00------------------------------1.00--------------------------------
...................................................................................................................TTCATTTGTCCATCCATAAA................................................................................................................... 201.000.00---------------1.00-----------------------------------------------
............................................................................................................................CCATCCATTCTCAGGCG............................................................................................................. 171.000.00-----------------1.00---------------------------------------------
............................................................................................................................CCCTGAGAATGGATGG.............................................................................................................. 1620.500.50------------------------------------0.50--------------------------