ID: uc003lpf.1_intron_8_0_chr5_147790329_f.3p
GENE: FBXO38(9)
chr5:147793499-147793748+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(7)
B-CELL 		(6)
BREAST 		(20)
CELL-LINE 		(3)
HEART 		(4)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TAATTTATTATTTTGTACAAGAAGTGCTACCATATGTACGGAATACCTAACCTAAAATTATACCTGAACCCAATGATAAGCAGATGATACAGAATGATGGTAGAGACTTTTTATACTGACTGGTAAGATACAAAGTTGGTAACACTCCCTAACACTTAAGAATTTGACTTTTTTTTTTTTTAATTGATTGCTCTTTTTAGGCAGAATGGCTAATGCGGATCTGGTGAAGTATGGTTTGGCTGATGTGGTA
.........................................................................................(((.((((.(((....)))..)))).)))....................................................................................................................................
.........................................................................74............................................................136................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
.........................................................................................CAGAATGATGGTAGAGACTTTTTATACT.....................................................................................................................................28111.0011.0011.00-----------------------------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTATACTGACTGG...............................................................................................................................3515.005.00---2.00----1.00----------1.00------------------1.00---------------
.........................................................................................CAGAATGATGGTAGAGACTTTTTATACTGACT.................................................................................................................................3215.005.00-------1.002.00----------1.00--1.00-------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTAT........................................................................................................................................2615.005.00-----2.00-------2.00-------------------1.00--------------------
.........................................................................................CAGAATGATGGTAGAGACTTTTTATACTGACTGG...............................................................................................................................3414.004.00---1.003.00-------------------------------------------------
..............................................................................AGCAGATGATACAGACTTT.........................................................................................................................................................194.000.00------3.00----------1.00------------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTATACTGACT.................................................................................................................................3313.003.00-------1.00------------2.00---------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTATACTGACTGAA..............................................................................................................................362.000.00---2.00--------------------------------------------------
...................................................................ACCCAATGATAAGCAGATGATACA...............................................................................................................................................................2412.002.00---------------------2.00--------------------------------
....................................................................................................................................................................................................................ATGCGGATCTGGTGAAGTATGGTT..............2412.002.00-----------1.00------------------------1.00-----------------
..................................................................................................................ACTGACTGGTAAGATACA......................................................................................................................1812.002.00---------------2.00--------------------------------------
...............................................................CTGAACCCAATGATAAGCAG.......................................................................................................................................................................2012.002.00-------------------------------1.00-----------1.00----------
........................................................................................ACAGAATGATGGTAGAGACTTTTT..........................................................................................................................................2412.002.00----------------2.00-------------------------------------
.........................................................................................CAGAATGATGGTAGAGACTTTTT..........................................................................................................................................2312.002.00-----1.00-----------------------------------------1.00------
........................................................................................ACAGAATGATGGTAGAGAC...............................................................................................................................................1912.002.00------------------2.00-----------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTATACTGACTGGT..............................................................................................................................3612.002.00-------1.00-----------------------------1.00----------------
.....................................................................................................................................................................................................................TGCGGATCTGGTGAAG.....................1611.001.00--------------------------------------------------1.00---
...............................................................................................................................................................................................................GGCTAATGCGGATCTGGTGAAGTTT..................251.000.00---------1.00--------------------------------------------
................................................................................................................................................................AATTTGACTTTTTTTTTGTTA.....................................................................211.000.00----------------------------------1.00-------------------
.........................................................................................CAGAATGATGGTAGAGACT..............................................................................................................................................1911.001.00---------1.00--------------------------------------------
......................................................................................................................................................................ACTTTTTTTTTTTTTAATTATTG.............................................................231.000.00---------------------------1.00--------------------------
...............................................................................................GATGGTAGAGACTTTTTATACTGACTGGT..............................................................................................................................2911.001.00-------------------------1.00----------------------------
.......................................................AATTATACCTGAACCCAATGATAAGCAGA......................................................................................................................................................................2911.001.00------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................TATGGTTTGGCTGATGTGGGAGA231.000.00---------------------------------------1.00--------------
..................................................................................................................................................................................TTTAATTGATTGCTCTTTTTAG..................................................2211.001.00--------------------------------------------1.00---------
.............................................................................AAGCAGATGATACAGAATGATGGT.....................................................................................................................................................2411.001.00--------------1.00---------------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTATACTGAA..................................................................................................................................321.000.00-----1.00------------------------------------------------
...................................................................................ATGATACAGAATGATGGTAGAGACTCT............................................................................................................................................271.000.00----------1.00-------------------------------------------
..............................................................................AGCAGATGATACAGAATTT.........................................................................................................................................................191.000.00-----------------1.00------------------------------------
..............................................................CCTGAACCCAATGATAAGCAGATGA...................................................................................................................................................................2511.001.00-----------------------------1.00------------------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTTTCTTG..................................................................231.000.00-1.00----------------------------------------------------
..........................................................................................AGAATGATGGTAGAGACTT.............................................................................................................................................1911.001.00--------------------------1.00---------------------------
...........................................................................................................................................................................................................GAATGGCTAATGCGGATCT............................1911.001.00--1.00---------------------------------------------------
.............................................................................AAGCAGATGATACAGACTTT.........................................................................................................................................................201.000.00------1.00-----------------------------------------------
.......................................................................................................................................................................................................................CGGATCTGGTGAAGTATGG................1911.001.00-----------------------------------1.00------------------
.......................................................................................................................................TTGGTAACACTCCCTAACACTAAG...........................................................................................241.000.00----------1.00-------------------------------------------
..............................................................................................TGATGGTAGAGACTTTTTATACTGACTGGT..............................................................................................................................3011.001.00----1.00-------------------------------------------------
...................................................................................................................CTGACTGGTAAGATACAAAGTTGG...............................................................................................................2411.001.00------------------------1.00-----------------------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTTTTGGTC.................................................................241.000.00-1.00----------------------------------------------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTCTG.....................................................................201.000.00-1.00----------------------------------------------------
..................................................................................................................................................................TTTGACTTTTTTTTTTTTCGAG..................................................................221.000.00-1.00----------------------------------------------------
................................................................................................................................................................................................................................TGAAGTATGGTTTGGCTGATGTGGT.2511.001.00------------------------------------------------1.00-----
.........................................................................................CAGAATGATGGTAGAGACTTTTTATACTGCCT.................................................................................................................................321.000.00-----------------------------------------1.00------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTCTGG....................................................................211.000.00-1.00----------------------------------------------------
.........................................................................................CAGAATGATGGTAGAGACTTTTTATACTGA...................................................................................................................................3011.001.00----------------------------------------------------1.00-
........................................................................................ACAGAATGATGGTAGAGACTTT............................................................................................................................................2211.001.00--1.00---------------------------------------------------
........................................................................................ACAGAATGATGGTAGAGACTTTTTATACTGAC..................................................................................................................................3211.001.00----------------------1.00-------------------------------
......................................................................................................................................................................ACTTTTTTTTTTTTTAATTATAG.............................................................231.000.00-----------------------1.00------------------------------
...................................................................................................................................................................................................................................AGTATGGTTTGGCTGATGT....1911.001.00--------------------------------1.00---------------------
......................................................................................................................................................................ACTTTTTTTTTTTTTAATTAATG.............................................................231.000.00---------------------------------------------------1.00--
.....................................................................................................AGAGACTTTTTATACTGACTGG...............................................................................................................................2211.001.00---------1.00--------------------------------------------
.....................................................................................................AGAGACTTTTTATACTGACT.................................................................................................................................2011.001.00-----------1.00------------------------------------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTTTCGAG..................................................................231.000.00-1.00----------------------------------------------------
.......................................................................................................................................................................................................................CGGATCTGGTGAAGTA...................1611.001.00------------1.00-----------------------------------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTTTTAATG.................................................................241.000.00-1.00----------------------------------------------------
................................................................................................................ATACTGACTGGTAAGGATG.......................................................................................................................191.000.00--------------1.00---------------------------------------
....................................................................................................................................................................TGACTTTTTTTTTTTTTAATTTCTG.............................................................251.000.00-1.00----------------------------------------------------
..........................................................................................AGAATGATGGTAGAGACTTTTT..........................................................................................................................................2211.001.00--1.00---------------------------------------------------
......................................................................................................................................................................................................................................ATGGTTTGGCTGATGTGG..1811.001.00------------1.00-----------------------------------------
................................................................TGAACCCAATGATAAGCAGATGATACAG..............................................................................................................................................................2811.001.00----------------------------------------------1.00-------
............................................................................................AATGATGGTAGAGACTTT............................................................................................................................................1811.001.00--1.00---------------------------------------------------
......................................................................................................................................................................ACTTTTTTTTTTTTTAATTAAAT.............................................................231.000.00-----------------------1.00------------------------------
.................................................................................................................................................................................................................................GAAGTATGGTTTGGCTGATGTGGT.2411.001.00-------------------------------------------------1.00----
.........................................................................................CAGAATGATGGTAGAGAC...............................................................................................................................................1811.001.00---------------------------------------------1.00--------
....................................................................................................TAGAGACTTTTTATACTGACT.................................................................................................................................2111.001.00----------------------------1.00-------------------------
..................................................................................................................................................................TTTGACTTTTTTTTTTTTCTGG..................................................................221.000.00----------------------------------------1.00-------------
.................................................................................................................................................................ATTTGACTTTTTTTTTTTCCCT...................................................................221.000.00----------1.00-------------------------------------------
...............................................................................................................................................................................TTTTTTAATTGATTGCAAA........................................................191.000.001.00-----------------------------------------------------
................................................................TGAACCCAATGATAAGCAGATG....................................................................................................................................................................2211.001.00------------------------------------------1.00-----------
...........................................................................................GAATGATGGTAGAGACT..............................................................................................................................................1730.330.33-----------0.33------------------------------------------
..................................................................................................................................................................................................................................AAGTATGGTTTGGCTG........1630.330.33------------------------0.33-----------------------------
.....................................................AAAATTATACCTGAAC.....................................................................................................................................................................................1650.200.20-----------------------------------------------------0.20

Antisense strand
TAATTTATTATTTTGTACAAGAAGTGCTACCATATGTACGGAATACCTAACCTAAAATTATACCTGAACCCAATGATAAGCAGATGATACAGAATGATGGTAGAGACTTTTTATACTGACTGGTAAGATACAAAGTTGGTAACACTCCCTAACACTTAAGAATTTGACTTTTTTTTTTTTTAATTGATTGCTCTTTTTAGGCAGAATGGCTAATGCGGATCTGGTGAAGTATGGTTTGGCTGATGTGGTA
.........................................................................................(((.((((.(((....)))..)))).)))....................................................................................................................................
.........................................................................74............................................................136................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
.............................................................................................................................................................................TTTTTTTTAATTGATTAGT.......................................................... 191.000.00--1.00---------------------------------------------------