ID: uc003lfp.2_intron_1_0_chr5_139815843_f.3p
GENE: (2)
chr5:139817879-139818128+


(1)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
KIDNEY 		(9)
LIVER 		(1)
OTHER 		(12)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GTGGCAGAATTGAATTGATAAGCCTTATCTTCTGTCAACCTAACCTATGGATTCTATACCATTTCTTTTTCCTAGATAATAGTGTTTAGAAATATAATTACAATTTGCACTTTTATACTTTTTTTTTTGTTGTTCTGCACTACCTGATTGATTGATGCACACTGAAGGAATTGGCAAATTGTCAACTGCTGATGGTAAAGCTTTTGCAGATCCTGAGGTACTCCGGAGACTGACATCCTCAGTTAGTTGT
...........................................................................................................................................................((((...........(((((.....)))))..(((........)))...))))..........................................
................................................................................................................................................145............................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................................................GATTGATGCACACTGAAG...................................................................................18122.0022.0021.00-----------------------------------------1.00--------------
.........................................................................................................................................................................................................................GTACTCCGGAGACTGACA...............1813.003.00----1.00------2.00---------------------------------------------
.........................................................................................................................................................................................CTGCTGATGGTAAAGCTTT..............................................1912.002.00--------1.00--------------1.00---------------------------------
...........................................................................................................................................................................................................TTGCAGATCCTGAGGTACTCCGGAG......................2512.002.00--2.00------------------------------------------------------
.....................................................................................................................................................................................................................TGAGGTACTCCGGAGACTGAC................2112.002.00----------------------------1.00------1.00---------------------
...............................................................................................................................................CTGATTGATTGATGCACACT.......................................................................................2012.002.00--------------2.00------------------------------------------
......................................................................................................................................................................................................................GAGGTACTCCGGAGACTGACAT..............2212.002.00--------------------2.00------------------------------------
..............................................................................................................................................................................................................................CCGGAGACTGACATCCTC..........1811.001.00-----------------1.00---------------------------------------
.......................................................................................................................................................................................AACTGCTGATGGTAAAGCTTTTGC...........................................2411.001.00---------------------------------1.00-----------------------
...........................................................................................................CACTTTTATACTTTTTTTTCTG.........................................................................................................................221.000.00---1.00-----------------------------------------------------
.................................................................................................................................................................................ATTGTCAACTGCTGATGGTAAAG..................................................2311.001.00-------1.00-------------------------------------------------
............................................................................................................................................................................................CTGATGGTAAAGCTTTTGCAGA........................................2211.001.00----------------------------------------------1.00----------
...................................................................................................................................................................................TGTCAACTGCTGATGGTAA....................................................1911.001.00----------------------------------------1.00----------------
...............................................................................................................................................................................AAATTGTCAACTGCTGATGG.......................................................2011.001.00------------------------1.00--------------------------------
...................................................................................................................TACTTTTTTTTTTGTTCA.....................................................................................................................181.000.00---------------------------1.00-----------------------------
...............................................................................................AATTACAATTTGCACACTG........................................................................................................................................191.000.00-----1.00---------------------------------------------------
.................................................................................................................................................GATTGATTGATGCACACTGAAG...................................................................................2211.001.00-----------------------------------------------1.00---------
...........................................................................................................................................CTACCTGATTGATTGATGCACAC........................................................................................2311.001.00-------------------------1.00-------------------------------
......................................................................................................................................................................................................AGCTTTTGCAGATCCTG...................................1711.001.00---------1.00-----------------------------------------------
.......................................................................................................................................................................................................................AGGTACTCCGGAGACTGACATCCT...........2411.001.00----------1.00----------------------------------------------
...........................................................................................................................................................................................GCTGATGGTAAAGCTTTT.............................................1811.001.00----1.00----------------------------------------------------
.......................................................................................................................................................................................AACTGCTGATGGTAAAGCTTTTG............................................2311.001.00-------------------1.00-------------------------------------
..........................................................................................AATATAATTACAATTTCTT.............................................................................................................................................191.000.00------------------1.00--------------------------------------
...............................................................................................................................................................................AAATTGTCAACTGCTGATGGTAAAGCT................................................2711.001.00-------------------------------------------------1.00-------
.....................................................................................................................................................................................................................TGAGGTACTCCGGAGACTGACAT..............2311.001.00---------------1.00-----------------------------------------
.....................................................................................................................................................................................................AAGCTTTTGCAGATCCTGAGGTAC.............................2411.001.00---------------1.00-----------------------------------------
....................................................................................................................................................TGATTGATGCACACTGAA....................................................................................1811.001.00------------------------------1.00--------------------------
...............................................................................................................................................................................AAATTGTCAACTGCTGATGGT......................................................2111.001.00-------------------------------------------1.00-------------
..............................................................................................................................................................................................................CAGATCCTGAGGTACTCCGGAGACTG..................2611.001.00------------------------------------------------1.00--------
.....................................................................................................................................................................................................AAGCTTTTGCAGATCCTGAGTTA..............................231.000.00------------------------------------1.00--------------------
............................................................ATTTCTTTTTCCTAGATACA..........................................................................................................................................................................201.000.00-----1.00---------------------------------------------------
.....................................................................................................................CTTTTTTTTTTGTTGTGCG..................................................................................................................191.000.00-------------1.00-------------------------------------------
..............................................................................................................................................CCTGATTGATTGATGCACAC........................................................................................2011.001.00----------------1.00----------------------------------------
................................................................................................................................................................................AATTGTCAACTGCTGATGGTAAAGC.................................................2511.001.00----------------1.00----------------------------------------
.............................................................................................................CTTTTATACTTTTTTTTTTTCT.......................................................................................................................221.000.00-1.00-------------------------------------------------------
.............................................................................................................CTTTTATACTTTTTTTTTTAAT.......................................................................................................................221.000.00-1.00-------------------------------------------------------
...........................................................................................................................................CTACCTGATTGATTGATGCACACT.......................................................................................2411.001.00---------------------------------------------------1.00-----
......................................................................................................................................................................................................AGCTTTTGCAGATCCTGAGGTA..............................2211.001.00-----------------1.00---------------------------------------
...........................................................................................................................................CTACCTGATTGATTGATGCACACTGAAG...................................................................................2811.001.00------------1.00--------------------------------------------
....................................................................................................................ACTTTTTTTTTTGTTGGCTT..................................................................................................................201.000.00--1.00------------------------------------------------------
......................................................................................................................................................ATTGATGCACACTGAAGGAATTG.............................................................................2311.001.00----------1.00----------------------------------------------
............................................................................................................................................TACCTGATTGATTGATGCACACTGAA....................................................................................2611.001.00--------------------------1.00------------------------------
................................................................................................................................................TGATTGATTGATGCACACTGAAG...................................................................................2311.001.00---------------------------------------1.00-----------------
..................................................................................................................ATACTTTTTTTTTTGTGAG.....................................................................................................................191.000.00-1.00-------------------------------------------------------
..........................................................................................................................................................................................................................TACTCCGGAGACTGACAT..............1811.001.00----1.00----------------------------------------------------
....................................................................................................................ACTTTTTTTTTTGTTGCCAG..................................................................................................................201.000.00--1.00------------------------------------------------------
..............................................................................................................TTTTATACTTTTTTTCTTG.........................................................................................................................191.000.00----------------------------------------------------1.00----
.............................................................................................................................................................................................................................TCCGGAGACTGACATCCTCA.........2011.001.00-----------------------------------------1.00---------------
........................................................................................................................................................................................................CTTTTGCAGATCCTGAGGTA..............................2011.001.00----------------------1.00----------------------------------
...............................................................................................................TTTATACTTTTTTTTTACTG.......................................................................................................................201.000.00------1.00--------------------------------------------------
................................................................................................................................................TGATTGATTGATGCACACTG......................................................................................2011.001.00--------------------------------------------------1.00------
...............................................................................................................................................CTGATTGATTGATGCACACTGAAAA..................................................................................251.000.00-----------------------------1.00---------------------------
...............................................................................................................TTTATACTTTTTTTTTTACTG......................................................................................................................211.000.00------------------1.00--------------------------------------
..................................................ATTCTATACCATTTCTTTTTCCTAG...............................................................................................................................................................................2511.001.00---1.00-----------------------------------------------------
..............................................................................................................................................CCTGATTGATTGATGCACACTG......................................................................................2211.001.00--------------------------------------------1.00------------
...............................................................................................................................................CTGATTGATTGATGCACACTG......................................................................................2111.001.00----------------------------------1.00----------------------
.............................................................................................................................TTTGTTGTTCTGCACTACCTGA.......................................................................................................2211.001.00------------1.00--------------------------------------------
...............................................................................................................TTTATACTTTTTTTTTTAATT......................................................................................................................211.000.00-1.00-------------------------------------------------------
...........................................................................................................................................................................................................................ACTCCGGAGACTGACATCC............1911.001.00--------1.00------------------------------------------------
.............................................................................................................CTTTTATACTTTTTTTCGTG.........................................................................................................................201.000.00-1.00-------------------------------------------------------
...............................................................................................................................................................CACTGAAGGAATTGGCAA.........................................................................1811.001.00--------------------------------1.00------------------------
...............................................................................................................................................CTGATTGATTGATGCACACTGAAGA..................................................................................251.000.00-------------------------------1.00-------------------------
......................................................................................................................................................................................................................GAGGTACTCCGGAGACTGACATCC............2411.001.00-------------------1.00-------------------------------------
............................................................................................................................................TACCTGATTGATTGATGCACAC........................................................................................2211.001.00-------1.00-------------------------------------------------
.............................................................................................................................................ACCTGATTGATTGATGCACACT.......................................................................................2211.001.00--------------------------------------1.00------------------
..................................................................................................................................................................................................GTAAAGCTTTTGCAGATCCTGAGGT...............................2511.001.00---------1.00-----------------------------------------------
.....................................................................................................................CTTTTTTTTTTGTTGCTCC..................................................................................................................191.000.00-------------1.00-------------------------------------------
.............................................................................................................................................................................................................................TCCGGAGACTGACATCCT...........1811.001.00-------------------------------------1.00-------------------
...............................................................................................................TTTATACTTTTTTTTTATTG.......................................................................................................................201.000.00------1.00--------------------------------------------------
.............................................................................................................................................................................GCAAATTGTCAACTGCTGAT.........................................................2011.001.00---------------------1.00-----------------------------------
...........................................................................................................CACTTTTATACTTTTTTTTTT..........................................................................................................................2111.001.00---1.00-----------------------------------------------------
.........................................................................................................................................................................................CTGCTGATGGTAAAGCT................................................1720.500.50-----------------------------------------------------0.50---
...............................................................................................................................................................................................ATGGTAAAGCTTTTGC...........................................1620.500.50------------------------------------------------------0.50--
.......................................................................................................................................................................................................................AGGTACTCCGGAGACTGA.................1850.200.20-------------------------------------------------------0.20-
.....................................................CTATACCATTTCTTTT.....................................................................................................................................................................................1690.110.11--------------------------------------------------------0.11

Antisense strand
GTGGCAGAATTGAATTGATAAGCCTTATCTTCTGTCAACCTAACCTATGGATTCTATACCATTTCTTTTTCCTAGATAATAGTGTTTAGAAATATAATTACAATTTGCACTTTTATACTTTTTTTTTTGTTGTTCTGCACTACCTGATTGATTGATGCACACTGAAGGAATTGGCAAATTGTCAACTGCTGATGGTAAAGCTTTTGCAGATCCTGAGGTACTCCGGAGACTGACATCCTCAGTTAGTTGT
...........................................................................................................................................................((((...........(((((.....)))))..(((........)))...))))..........................................
................................................................................................................................................145............................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................................................................................GCTTTTGCAGATCCTATA................................. 181.000.00---------------------------------------------1.00-----------