ID: uc003lbf.3_intron_2_0_chr5_135379812_f.3p
GENE: (3)
chr5:135381824-135382073+


(1)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(14)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(4)
LIVER 		(1)
OTHER 		(7)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AGGCATTTGACTTATTGAGTTGTTTTAAGAAGACTATAACAAGCCTTAAGCCCCCCAGAAACAGCCTGTCTTTGGGCTTTCCCACATGCCTCCTCGTCCTCTCCACCTGTAGATGTACCGTGCTCTCTGTCAGAGAAGGGAGGGTGTGGTTGGGCTGGACCCCCAGAGGCCATCCCTCCTTCTGTCTTCTGCTCCTGCAGCCCTACCACTCTCAAACCTTTACGAGACCCTGGGAGTCGTTGGATCCACC
.........................................................................................................((.((......((((..((((((.((...))..))))))..))))...)).))............................................................................................
.........................................................................................................106.....................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................AGATGTACCGTGCTCAGAC.........................................................................................................................1956.000.0012.0010.0014.00-3.001.003.003.001.003.00-----2.002.001.00-----------------1.00--------
..............................................................................................................AGATGTACCGTGCTCAGA..........................................................................................................................1839.000.0010.0011.002.00-2.004.002.001.003.00-----1.00-------------1.00---1.00---1.00-------
..............................................................................................................AGATGTACCGTGCTCAG...........................................................................................................................177.000.00----5.00------------1.00----1.00---------------------
................................................................................................................................GTCAGAGAAGGGAGGACG........................................................................................................182.000.00-------------2.00------------------------------
..............................................................................................................AGATGTACCGTGCTCTTCAG........................................................................................................................202.000.00---1.00----------1.00-----------------------------
...................................................................................................................................................................................................................................CCCTGGGAGTCGTTGGATC....1912.002.00----------1.00---------------------------1.00-----
..............................................................................................................AGATGTACCGTGCTCAAA..........................................................................................................................182.000.00--2.00-----------------------------------------
................................................................................................................................................................................................................................AGACCCTGGGAGTCGTTGGATCC...2312.002.00---1.00-----------------------------1.00----------
.................................................................................................................................................................................................................................GACCCTGGGAGTCGTTGGAT.....2012.002.00---2.00----------------------------------------
...........................................................................................................................................GAGGGTGTGGTTGGGCTGG............................................................................................1912.002.00------------2.00-------------------------------
..........................................................................................................................................................................................................................TTTACGAGACCCTGGGAGT.............1912.002.001.00--1.00----------------------------------------
..............................................................................................................AGATGTACCGTGCTCCAG..........................................................................................................................181.000.00-1.00------------------------------------------
.............................................................................................................................TCTGTCAGAGAAGGGAGGGTG........................................................................................................2111.001.00------------------------1.00-------------------
..................................................................................................................................................................................................................................ACCCTGGGAGTCGTTGGAT.....1911.001.00---1.00----------------------------------------
..............................................................................................................AGATGTACCGTGCTCAGGC.........................................................................................................................191.000.00--1.00-----------------------------------------
..........................................................................................................................................................................................................................TTTACGAGACCCTGGGAGTCGTTGGATCCAC.3111.001.00--------------------1.00-----------------------
..............................................................................................................AGATGTACCGTGCTCA............................................................................................................................161.000.00----1.00---------------------------------------
......................................................................................................................................................................................................................................TGGGAGTCGTTGGATCCA..1811.001.00-----------1.00--------------------------------
...................................................................................................................................................................................................................................CCCTGGGAGTCGTTGGATCCACC2311.001.00----------1.00---------------------------------
.........................................................................................................................................................................................................................CTTTACGAGACCCTGGGAGTCGTTGGATCCA..3111.001.00-------------------------------------1.00------
..............................................................................................................AGATGTACCGTGCTCTTCAT........................................................................................................................201.000.00----------------------------------------1.00---
..............................................................................................................AGATGTACCGTGCTCTGATG........................................................................................................................201.000.00---------------------------------------1.00----
.................................................................................................................................................................................................................................GACCCTGGGAGTCGTTGGATC....2111.001.00---1.00----------------------------------------
........................................................................................................................................................................................................................CCTTTACGAGACCCTGGGAG..............2011.001.00-------------------------------1.00------------
.....................................................................................................................................................................................................................................CTGGGAGTCGTTGGATCCACC2111.001.00----------1.00---------------------------------
...............................................................................................................................................................................................................................GAGACCCTGGGAGTCGTTGGATCC...2411.001.00-----------1.00--------------------------------
................................................................................................................................................................................................................................AGACCCTGGGAGTCGTTGGAT.....2111.001.00---1.00----------------------------------------
............................................................................................................................................................................................................................TACGAGACCCTGGGAGTCG...........1911.001.00---------1.00----------------------------------
.....................................................................................................................................................................................................................................CTGGGAGTCGTTGGATC....1711.001.00------------------1.00-------------------------
..........................................................................................................................................................................................................................TTTACGAGACCCTGGGAGTCGTTGGAT.....2711.001.00---1.00----------------------------------------
........................................................................................................................................AGGGAGGGTGTGGTTGGGCA..............................................................................................201.000.00-----------------------------1.00--------------
................................................................................................................................................................................................................................AGACCCTGGGAGTCGTTG........1811.001.00---1.00----------------------------------------
..............................................................................................................AGATGTACCGTGCTCTCAGAC.......................................................................................................................211.000.00-1.00------------------------------------------
................................................................................................................................................................................................................................AGACCCTGGGAGTCGTTGGATCCACC2611.001.00---1.00----------------------------------------
...............................................................................................................GATGTACCGTGCTCTCAGAC.......................................................................................................................201.000.001.00-------------------------------------------
............................................................................................................................................................................................................................TACGAGACCCTGGGAGTCGT..........2011.001.00----------1.00---------------------------------
...............................................................................................................................................................................................................................GAGACCCTGGGAGTCGTTGGATCCA..2511.001.00---1.00----------------------------------------
..............................................................................................................................................................................................................................CGAGACCCTGGGAGTCGTTGGATC....2411.001.00---1.00----------------------------------------
...............................................................................................................................................................................................................................GAGACCCTGGGAGTCGTTGG.......2011.001.00---1.00----------------------------------------
......................................................................................................................................................................................................................................TGGGAGTCGTTGGATCCACC2011.001.00---1.00----------------------------------------
..............................................................................................................AGATGTACCGTGCTCAAAC.........................................................................................................................191.000.00--------------------------1.00-----------------
..............................................................................................................AGATGTACCGTGCTCAGT..........................................................................................................................181.000.00----1.00---------------------------------------
.....................................................................................................................................................................................................................................CTGGGAGTCGTTGGATCCAC.2011.001.00-----------1.00--------------------------------
..............................................................................................................................................................................................................................CGAGACCCTGGGAGTCGTTGGATCCA..2611.001.00----------------------------------1.00---------
.................................................................................................................................................................................................................................GACCCTGGGAGTCGTTGGATCC...2211.001.00---1.00----------------------------------------
.............................................................................................................................................................................................................................ACGAGACCCTGGGAGTCGTT.........2011.001.00---------------------------1.00----------------
.............................................................................................................................TCTGTCAGAGAAGGGAGGG..........................................................................................................1920.500.50------------------------------------------0.50-
.............................................................................................................................................................................................................................ACGAGACCCTGGGAG..............1520.500.50-----------------------------------------0.50--
.....................................................................................................TCCACCTGTAGATGT......................................................................................................................................1570.140.14-------------------------------------------0.14

Antisense strand
AGGCATTTGACTTATTGAGTTGTTTTAAGAAGACTATAACAAGCCTTAAGCCCCCCAGAAACAGCCTGTCTTTGGGCTTTCCCACATGCCTCCTCGTCCTCTCCACCTGTAGATGTACCGTGCTCTCTGTCAGAGAAGGGAGGGTGTGGTTGGGCTGGACCCCCAGAGGCCATCCCTCCTTCTGTCTTCTGCTCCTGCAGCCCTACCACTCTCAAACCTTTACGAGACCCTGGGAGTCGTTGGATCCACC
.........................................................................................................((.((......((((..((((((.((...))..))))))..))))...)).))............................................................................................
.........................................................................................................106.....................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..........................AAGAAGACTATAACAGCG.............................................................................................................................................................................................................. 181.000.00------------------------------1.00-------------
..................................................................................................................................................................CCAGAGGCCATCCCTTTTC..................................................................... 191.000.00-----------------------1.00--------------------
...........TTATTGAGTTGTTTTATTC............................................................................................................................................................................................................................ 191.000.00---------------------1.00----------------------
.............................................CAGGCTGTTTCTGGGGGGCTTAA...................................................................................................................................................................................... 2311.001.00-------------------1.00------------------------
...............................................................CATGTGGGAAAGCCCAAAGACAGGC.................................................................................................................................................................. 2511.001.00-------------------------1.00------------------
...............................................................AAGCCCAAAGACAGGC........................................................................................................................................................................... 1640.250.25------------------0.25-------------------------