ID: uc003kxa.2_intron_2_0_chr5_131821409_r.3p
GENE: IRF1(7)
chr5:131821359-131821608-


(1)
AGO1.ip 		(2)
AGO2.ip 		(19)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(20)
CELL-LINE 		(7)
CERVIX 		(2)
HEART 		(4)
HELA 		(11)
LIVER 		(2)
OTHER 		(20)
SKIN 		(1)
XRN.ip

Sense strand
AGAGGCTGAGTCACCAGGCCAGGGTCCTGTTCTGGAATCTCTATGGCAGATAGGTCCACCGGGAGGGTGTGTGTGTGTGTGTGTGTGTCAGAGAGACAGAGAGACAGAGAAAGGGCAGGGGGATCTGGTGGGCTGGAACTGGAACTGCAGGGTGAGTGTGGCTGACTGCCAGCCAACCTCTCTGCTTTCCCCATCCACAGCTACAACAGATGAGGATGAGGAAGGGAAATTACCTGAGGACATCATGAAG
....................................................(((((((((((......(((.......(((...((((.....)))).....)))........)))......)))))))))))....(((......)))....................................................................................................
..................................................51...............................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040025(GSM532910)
G613T. (cervix)		GSM532884(GSM532884)
G871T. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTG..........................................................................................21110.0010.00-2.00----4.002.00--1.00--------------------------------------------------------------------1.00---------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGCT.......................................................................................2416.006.001.001.00-3.00--------------------1.00----------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGT...........................................................................................2016.006.00-4.00--1.00---------------------------1.00--------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGT.........................................................................................2216.0010.00-------------2.00-----2.00-------2.00-------------------------------------------------------------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAGTGT...........................................................................................2216.006.00---3.00-------2.00---------------------------------------------------1.00-------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGG.........................................................................................2215.005.00---------------------1.00--------------------1.00------------------------1.00---------1.00--1.00--------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAGTG............................................................................................2115.005.00----4.00---1.00--------------------------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGC........................................................................................2314.004.00------------------1.00-----------------1.00-1.00-------1.00------------------------------------------------
...............................................................................................................................................................................................................AGATGAGGATGAGGAAGGGAAATT...................2413.003.00----------------------------------------1.00----------------1.00-----------------------1.00-------------
........................................................................................................................................................................................................................................CCTGAGGACATCATGAAG1813.003.002.00----------------------------------------------------------1.00-----------------------------------
..................................................................................................................................................................................................................TGAGGATGAGGAAGGGAA......................1813.003.00-------------------------------------------1.00-----------------------------------------1.00-1.00-------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAGGGAAA.....................2413.003.00-----3.00-----------------------------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTG............................................................................................1913.003.00-1.00--1.00-------------------------------------------------------------------1.00----------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGCA.......................................................................................2413.004.00---3.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GATGAGGATGAGGAAGGGAAATTACC................2612.002.00--1.00--------------1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................AACAGATGAGGATGAGGAAGGG........................2212.002.002.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................AGGGAAATTACCTGAGGACATCATGAAG2812.002.00--------------------------2.00--------------------------------------------------------------------
...........................................................................................................................................................................................................CAACAGATGAGGATGAGGAAGGGA.......................2412.002.001.00------------------------------------1.00---------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGAA........................................................................................2312.0010.00---------------------------------------------------1.00------------------1.00------------------------
..............................................................................................................................................AACTGCAGGGTGAGTGTGGCTGAAAA..................................................................................262.000.002.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AAGGGAAATTACCTGAGGACAT.......2212.002.00----2.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GAGGATGAGGAAGGGAAATT...................2012.002.00-------------1.00--1.00------------------------------------------------------------------------------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAGGG........................2112.002.00--1.00--1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAGTGTG..........................................................................................2312.002.00--------------------2.00--------------------------------------------------------------------------
............................................................................................................................CTGGTGGGCTGGAACTCTG...........................................................................................................192.000.00---------1.00----1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGATGAGGATGAGGAAGG.........................1812.002.00-----------------------2.00-----------------------------------------------------------------------
......................................................................................................................................................................................................................GATGAGGAAGGGAAAGATC.................191.000.00-------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGGGGA........................................................................................2311.003.00----------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CAGATGAGGATGAGGAAGG.........................1911.001.00-------------------------------------------------------------------------1.00---------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGA...........................................................................................2011.003.00-1.00---------------------------------------------------------------------------------------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAGT.............................................................................................2011.001.00----------------1.00------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GAGGAAGGGAAATTACCTGAGG...........2211.001.00--1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................AACAGATGAGGATGAGGAAGGGAA......................2411.001.00--1.00--------------------------------------------------------------------------------------------
....................................................................................................................................CTGGAACTGGAACTGCAGGGTGAGTGGG..........................................................................................281.000.00----------------------------------------------------------1.00------------------------------------
.................................................................................TGTGTGTCAGAGAGACAGAGAGACAGAGA............................................................................................................................................2911.001.00---------------------------------------1.00-------------------------------------------------------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAGGGAAATTATC................291.000.00--1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................CCAACCTCTCTGCTTTCCCCATCCACAG..................................................2811.001.00-------------------------------------------------------1.00---------------------------------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAG..............................................................................................1911.001.00--------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................AGGGAAATTACCTGAGGACATCATGAAGC2911.002.00----------------------------1.00------------------------------------------------------------------
..........................................................................................................................................................................................................ACAACAGATGAGGATGAGGAAGGT........................241.000.00---------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................GAGGATGAGGAAGGGATA.....................181.000.00-----1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGATTGT...........................................................................................201.000.00------------------------------------------------1.00----------------------------------------------
..............................................................................................................................................................................................................CAGATGAGGATGAGGTCT..........................181.000.00---------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGA.........................................................................................2211.0010.00----------1.00------------------------------------------------------------------------------------
...........................................................CGGGAGGGTGTGTGTGTGTGT..........................................................................................................................................................................2111.001.00-----------------------------1.00-----------------------------------------------------------------
.................................................................................................................................................................................................................ATGAGGATGAGGAAGGGAAATTAC.................2411.001.00-------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAGGGT.......................2211.002.00------------1.00----------------------------------------------------------------------------------
..................CCAGGGTCCTGTTCTGGAATCT..................................................................................................................................................................................................................2211.001.00-----------------1.00-----------------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGAT..........................................................................................2111.003.00------------------------------------------------------1.00----------------------------------------
..........................................................................................................GAGAAAGGGCAGGGGGATCT............................................................................................................................2011.001.00-------------------------------------------------1.00---------------------------------------------
...............................................................................................................................................................................................................AGATGAGGATGAGGAAGGGAAAT....................2311.001.00-------1.00---------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GGGAAATTACCTGAGGACATCATGAA.2611.001.00--1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GGGAAATTACCTGAGGACATCATGAAGCT291.000.00----------------------1.00------------------------------------------------------------------------
..............................................................................................................................................................................................................................AGGGAAATTACCTGAGGACATC......2211.001.00-------1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAGG.........................2011.001.00--------------------------------------------1.00--------------------------------------------------
.........................................................................................AGAGAGACAGAGAGACAGAG.............................................................................................................................................2001.001.00------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................................................AGGATGAGGAAGGGAAATT...................1921.001.000.50-0.50--------------------------------------------------------------------------------------------
....................................................................................................................................................AGGGTGAGTGTGGCTGAAA...................................................................................191.000.001.00----------------------------------------------------------------------------------------------
...................................................................................................................................GCTGGAACTGGAACTCTG.....................................................................................................181.000.00--------------------------------------------------------------------------------------1.00--------
....................................................................................................................................................AGGGTGAGTGTGGCTGCAA...................................................................................191.000.001.00----------------------------------------------------------------------------------------------
.........................................................................................AGAGAGACAGAGAGACAGA..............................................................................................................................................1901.001.00-----------------------------------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................................................CTGAGGACATCATGAAG1721.001.00----------------------------------------------------------------------------------------0.500.50-----
....................AGGGTCCTGTTCTGGAACTA..................................................................................................................................................................................................................201.000.00--------------------------------------------------------1.00--------------------------------------
.................................................................................................................................................................................................................ATGAGGATGAGGAAGGGAAAT....................2111.001.00-----1.00-----------------------------------------------------------------------------------------
...............................................................AGGGTGTGTGTGTGTGTGTGTGTGCCTG...............................................................................................................................................................281.000.00-------------------------1.00---------------------------------------------------------------------
.......................................................................................................................................GAACTGGAACTGCAGGGTGAGTGTGGC........................................................................................2711.001.00---------------1.00-------------------------------------------------------------------------------
.................................................................................................................................................TGCAGGGTGAGTGTGGCTGACT...................................................................................2211.001.00---------------------------------------------------------------------------1.00-------------------
...............................................................................................................................................................................................................AGATGAGGATGAGGAAGGGAAATTAC.................2611.001.00---------------------------------------------1.00-------------------------------------------------
..............................................................................................................................GGTGGGCTGGAACTGGAACTGCAGGGTGAGTGTGGCTGACTGCCAGCCAACCTCTCTGCTTTCCCC..........................................................6611.001.00------------------------------------------------------------------------------------1.00----------
...........................................................................................................................................TGGAACTGCAGGGTGAGATA...........................................................................................201.000.00-----------1.00-----------------------------------------------------------------------------------
...............................................................................................................AGGGCAGGGGGATCTGGTGGGCTGGA.................................................................................................................2611.001.00-------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGCAA......................................................................................2511.004.00-----------------------------------1.00-----------------------------------------------------------
..................................................................................................GAGAGACAGAGAAAGGGCAGGGGGAT..............................................................................................................................2611.001.00--1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAGGGA.......................2211.001.00------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................ATTACCTGAGGACATCATG...1911.001.00----------------------1.00------------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGCTA......................................................................................2511.006.00-1.00---------------------------------------------------------------------------------------------
.............................................................GGAGGGTGTGTGTGTGTGTGTGTTAT...................................................................................................................................................................261.000.00-----------------------------------------------------------------1.00-----------------------------
................................................................................................................................TGGGCTGGAACTGGAACTCTG.....................................................................................................211.000.00-----------------------------------------------------------------------------------1.00-----------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGCTGG.....................................................................................261.000.00--------------------------------------------------1.00--------------------------------------------
...................................................AGGTCCACCGGGAGGGTGTGTGTGT..............................................................................................................................................................................2511.001.00--------------1.00--------------------------------------------------------------------------------
...................................................................................................................................................................................................................GAGGATGAGGAAGGGAACT....................191.000.00----------------------------------------------------1.00------------------------------------------
.........................................................................................................................................................................................................TACAACAGATGAGGATGAGGAAGGG........................2511.001.00------------1.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................GATGAGGATGAGGAAGGGAAATTAA.................251.000.00--------------------------------------------------------------1.00--------------------------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAA..............................................................................................191.000.00---------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGCTT......................................................................................2511.006.00------------------------------1.00----------------------------------------------------------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTA..........................................................................................2111.006.00--------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TTACCTGAGGACATCATG...1811.001.00--1.00--------------------------------------------------------------------------------------------
............................................................................................................................................GGAACTGCAGGGTGAGTGTGGCT.......................................................................................2311.001.00--1.00--------------------------------------------------------------------------------------------
.............................................................................................................................TGGTGGGCTGGAACTGGAACTGC......................................................................................................2311.001.00------------------------------------------------------------------------------1.00----------------
...........................................................................................................................................TGGAACTGCAGGGTGAGTGTGGAA.......................................................................................2411.005.00--------1.00--------------------------------------------------------------------------------------
.......................................................................................................ACAGAGAAAGGGCAGTAGA................................................................................................................................191.000.00----------------------------------------------------------------------------1.00------------------
............................................................................................................................................................................................................AACAGATGAGGATGAGGAAG..........................2011.001.00-----------------------------------------------------------------------1.00-----------------------
.........................................................................................................................................ACTGGAACTGCAGGGTGAGTGTGG.........................................................................................2411.001.00----------------------------------------------------------------------------------1.00------------
................................................................................................................................................................................................................GATGAGGATGAGGAAGGGAAATTAC.................2511.001.00---------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AAGGGAAATTACCTGAGGACATCATG...2611.001.001.00----------------------------------------------------------------------------------------------
.........................................................................................................AGAGAAAGGGCAGGGGGA...............................................................................................................................1811.001.00------------------1.00----------------------------------------------------------------------------
.............................................................................................................................TGGTGGGCTGGAACTCTG...........................................................................................................181.000.00---------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................................................TGAGGATGAGGAAGGGAAATTAC.................2311.001.00--------------------------------------------------------------------------1.00--------------------
..............................................................................................................................................................................................................CAGATGAGGATGAGGAAGGGAA......................2211.001.00------------------------------------------------------------1.00----------------------------------
.............................................................................................................................................................................................................ACAGATGAGGATGAGGAAG..........................1930.670.67--0.33--0.33-----------------------------------------------------------------------------------------
...............................................................................................ACAGAGAGACAGAGAAAGGGCA.....................................................................................................................................2220.500.50-------------------------------------------------------------------------------------------0.50---
....................................................................................................................................................................................................................AGGATGAGGAAGGGAAAT....................1820.500.50----------------0.50------------------------------------------------------------------------------
..........................................................................................................................................CTGGAACTGCAGGGTGA...............................................................................................1720.500.50------------------------------------------------------------------------------------------0.50----
..............................................................................................................................................................................................................CAGATGAGGATGAGGAAG..........................1830.330.33-----0.33-----------------------------------------------------------------------------------------
.............................................................................................................................TGGTGGGCTGGAACTGG............................................................................................................1730.330.33---------0.33-------------------------------------------------------------------------------------
.....................................................................................................................................TGGAACTGGAACTGCAG....................................................................................................1760.170.17---------------------------------------------------------------------------------------------0.17-
................................................................................................................................................................................................................GATGAGGATGAGGAAGG.........................1760.170.17-----------------0.17-----------------------------------------------------------------------------
.............................................................................................................................................GAACTGCAGGGTGAGT.............................................................................................1670.140.14----------------------------------------------------------------------------------------------0.14
.........................................................................................................................................ACTGGAACTGCAGGG..................................................................................................1580.120.12----------------------------0.12------------------------------------------------------------------
...........................................................................................................................TCTGGTGGGCTGGAA................................................................................................................1590.110.11----------------------------------------------------------------------------------------0.11------

Antisense strand
AGAGGCTGAGTCACCAGGCCAGGGTCCTGTTCTGGAATCTCTATGGCAGATAGGTCCACCGGGAGGGTGTGTGTGTGTGTGTGTGTGTCAGAGAGACAGAGAGACAGAGAAAGGGCAGGGGGATCTGGTGGGCTGGAACTGGAACTGCAGGGTGAGTGTGGCTGACTGCCAGCCAACCTCTCTGCTTTCCCCATCCACAGCTACAACAGATGAGGATGAGGAAGGGAAATTACCTGAGGACATCATGAAG
....................................................(((((((((((......(((.......(((...((((.....)))).....)))........)))......)))))))))))....(((......)))....................................................................................................
..................................................51...............................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040025(GSM532910)
G613T. (cervix)		GSM532884(GSM532884)
G871T. (cervix)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
....................................................................................................................................................................................TAGCTGTGGATGGGGAAAGCAGA............................................... 2311.001.00-----------------------------------------1.00-----------------------------------------------------
....................................................................................................................................................................................................................AGGATGAGGAAGGGAAAACAG................. 211.000.00---------------------------------------------------------------------1.00-------------------------
.......................................................................TGTGTGTGTGTGTGTGTCAGAACAG.......................................................................................................................................................... 251.000.00--------------------------------------------------------------------1.00--------------------------
............................................................GGGAGGGTGTGTGTGTGTGTGTGCAAC................................................................................................................................................................... 271.000.00--------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................................CCACAGCTACAACAGATG...................................... 181.000.00------------------------------------------------------------------1.00----------------------------
................................................................................................................................................................................................................GATGAGGATGAGGAAG.......................... 161.000.00----------------------------------1.00------------------------------------------------------------
............................................................GGGAGGGTGTGTGTGTGTGTGCGA...................................................................................................................................................................... 241.000.00-----------------------------------------------------1.00-----------------------------------------
.............................................................GGAGGGTGTGTGTGTGTGTGTGATAT................................................................................................................................................................... 261.000.00---------1.00-------------------------------------------------------------------------------------
........................................................................................................................................................................................TGTTGTAGCTGTGGATGGGGAAAG.......................................... 2411.001.00----------------------------------------------------------------1.00------------------------------
..................CCAGAACAGGACCCTGG....................................................................................................................................................................................................................... 1750.200.20--------------------------------------------------------------------------------------------0.20--