ID: uc003kva.2_intron_3_0_chr5_128442756_f.5p
GENE: (4)
chr5:128442706-128442955+


(1)
AGO2.ip
(2)
B-CELL
(8)
BREAST
(6)
CELL-LINE
(4)
CERVIX
(5)
HEART
(5)
LIVER
(1)
OTHER
(2)
SKIN
(1)
XRN.ip

Sense strand
CTGATGCCACCTCATCAAGAAGCATGATGGACAGGATGTTTGCCCTCGAGGTAATTGTCCTGCTTGGGAATAGATCATTTGTCAAGTTTTCCAAATAAATGAGAAGAATACTGGATATTTAACAGTAATGAAAGGTTTACCTCCTAAATTTGAGTTGGTCTGGCAATATCAGACTAATTGATTTCAACTGTGCACTGACTGACCCTTAAGGCTTCACCACCATATCCTATTTTATGTCTCGTTTCCTCCT
........................................................(((.(((.(((((.((((((..........(((((((......)).))))).(((((.........)))))......))))))..)))))......(((((((((((.....)))))))))))............)))..)))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040040(GSM532925)
G612N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343336SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
SRR029127(GSM416756)
A549. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR343335SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR040015(GSM532900)
G623T. (cervix)
................................................................................................................................................................................ATTGATTTCAACTGTGTCT.......................................................1942.000.0039.00------1.00------------1.00---------1.00-----
.............ATCAAGAAGCATGATGGACAG........................................................................................................................................................................................................................2112.002.00-2.00----------------------------------
..................................................GTAATTGTCCTGCTTGG.......................................................................................................................................................................................1712.002.00--------2.00---------------------------
.................AGAAGCATGATGGACAGGATG....................................................................................................................................................................................................................2112.002.00-2.00----------------------------------
...................AAGCATGATGGACAGGATGTTTGCCCTCGAG........................................................................................................................................................................................................3111.001.00------------------------1.00-----------
...........................TGGACAGGATGTTTGCCCTCGAGC.......................................................................................................................................................................................................241.000.00-----------------1.00------------------
....................AGCATGATGGACAGGATA....................................................................................................................................................................................................................181.000.00--1.00---------------------------------
.............ATCAAGAAGCATGATGGACAGGATG....................................................................................................................................................................................................................2511.001.00--------------------------------1.00---
..........................ATGGACAGGATGTTTGCCCTCGAGC.......................................................................................................................................................................................................251.000.00----------1.00-------------------------
..................................GATGTTTGCCCTCGAGC.......................................................................................................................................................................................................171.000.00----1.00-------------------------------
................................................................................GTCAAGTTTTCCAAAGACT.......................................................................................................................................................191.000.00-------------------1.00----------------
....................AGCATGATGGACAGGATGTT..................................................................................................................................................................................................................2011.001.00------1.00-----------------------------
................................................................................................................................................................................ATTGATTTCAACTGTGTCA.......................................................191.000.00-------1.00----------------------------
................AAGAAGCATGATGGACAGG.......................................................................................................................................................................................................................1911.001.00--1.00---------------------------------
................................................................................GTCAAGTTTTCCAAAGCAT.......................................................................................................................................................191.000.00-----------------------------1.00------
................AAGAAGCATGATGGACAGGATG....................................................................................................................................................................................................................2211.001.00---------------1.00--------------------
..............TCAAGAAGCATGATGGACAGG.......................................................................................................................................................................................................................2111.001.00---1.00--------------------------------
....................AGCATGATGGACAGGATGTTT.................................................................................................................................................................................................................2111.001.00--------------1.00---------------------
...ATGCCACCTCATCAAGAAGCATGATGGACAG........................................................................................................................................................................................................................3111.001.00------------------1.00-----------------
................................................................................GTCAAGTTTTCCAAAGAAT.......................................................................................................................................................191.000.00-----------------------------------1.00
..........................................................................................................................................................................................ACTGTGCACTGACTGACC..............................................1811.001.00-1.00----------------------------------
...............CAAGAAGCATGATGGACAGGATGTTTGCCCT............................................................................................................................................................................................................3111.001.00---1.00--------------------------------
...............................................................................................................................................CTAAATTTGAGTTGGTCTGGC......................................................................................2111.001.00---------------------------------1.00--
.................AGAAGCATGATGGACAGGA......................................................................................................................................................................................................................1911.001.00--1.00---------------------------------
...............CAAGAAGCATGATGGACAGGATGTTT.................................................................................................................................................................................................................2611.001.00----1.00-------------------------------
.............ATCAAGAAGCATGATGGA...........................................................................................................................................................................................................................1811.001.00-----------1.00------------------------
............................................................................................AAATAAATGAGAAGAATACTGG........................................................................................................................................2211.001.00----------------------1.00-------------
..................GAAGCATGATGGACAGTTT.....................................................................................................................................................................................................................191.000.00------1.00-----------------------------
..............TCAAGAAGCATGATGGACAG........................................................................................................................................................................................................................2011.001.00--1.00---------------------------------
.................AGAAGCATGATGGACAGGATA....................................................................................................................................................................................................................211.000.00-1.00----------------------------------
...........................TGGACAGGATGTTTG................................................................................................................................................................................................................1570.140.14----------0.14-------------------------

Antisense strand
CTGATGCCACCTCATCAAGAAGCATGATGGACAGGATGTTTGCCCTCGAGGTAATTGTCCTGCTTGGGAATAGATCATTTGTCAAGTTTTCCAAATAAATGAGAAGAATACTGGATATTTAACAGTAATGAAAGGTTTACCTCCTAAATTTGAGTTGGTCTGGCAATATCAGACTAATTGATTTCAACTGTGCACTGACTGACCCTTAAGGCTTCACCACCATATCCTATTTTATGTCTCGTTTCCTCCT
........................................................(((.(((.(((((.((((((..........(((((((......)).))))).(((((.........)))))......))))))..)))))......(((((((((((.....)))))))))))............)))..)))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040040(GSM532925)
G612N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343336SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
SRR029127(GSM416756)
A549. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR343335SRR029130(GSM416759)
DLD2. (cell line)
SRR038857(GSM458540)
D20. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR040015(GSM532900)
G623T. (cervix)
...........................................................................................CAAATAAATGAGAAGCTGC............................................................................................................................................ 197.000.00---------2.00--1.001.00--1.00-----------1.00--1.00----
................................................................................................................................................................................ATTGATTTCAACTGTGGCT....................................................... 194.000.003.00--------------------------1.00--------
..................................................................................................ATGAGAAGAATACTGAAG...................................................................................................................................... 181.000.00---------------------1.00--------------
...........................................................................................CAAATAAATGAGAAGCTG............................................................................................................................................. 181.000.00-------------------------1.00----------
..................................................................................................ATGAGAAGAATACTGAA....................................................................................................................................... 171.000.00--------------------------1.00---------
................................................................................................................................................................................ATTGATTTCAACTGTGTT........................................................ 181.000.001.00-----------------------------------
................................................................................................................................................................................ATTGATTTCAACTGTGCT........................................................ 181.000.001.00-----------------------------------
.....GCCACCTCATCAAGAATAAG................................................................................................................................................................................................................................. 201.000.00----------------------------------1.00-
.................................................................................................................................................................................................ACTGACTGACCCTTAACCG...................................... 191.000.00-----1.00------------------------------
................................................................................................................................................................................ATTGATTTCAACTGTGGCTC...................................................... 201.000.00-----------------------1.00------------
.....................................................................................................................................................................................TTTCAACTGTGCACTGACATG................................................ 211.000.00-----1.00------------------------------