ID: uc003ksc.1_intron_1_0_chr5_118407352_f.5p
GENE: DMXL1(2)
chr5:118407302-118407551+


(1)
AGO1.ip 		(1)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(9)
BREAST 		(20)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(1)
KIDNEY 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CTGGCGACCACTGCTTCTCCGTGGGCAGCATTGGCGACCAGCGCTTCACGGTGAGTGAGGGAGGCCCTCGCGTCGCCCGTGGCCCGGCCTTTGCCCGTCATTCTGGGCCGAGCTTGGCCCAGAACGACGGGCAGAGGCGCGAGGTCTTGTCTCCCCAGGGGGGTCCTTACCACCCAGAACCCAGCAGACCTGGCCCTTGAGAACTAAGGAAGCAAAACCATGTCGGTCAGTGAGGTACTGTATGGAGCCT
....................................................................................................................((((........))))...((...((((.(((.(((....))).))).)))).))...............................................................................
..................................................................................................................115.......................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................CAGAACGACGGGCAGAGGCGCGA............................................................................................................23115.0015.00----2.00---2.00---------1.00---1.00---1.00--1.00-----1.00----1.00-1.00---------1.00---------1.00-----1.001.00---------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCT.............................................................................................................22113.005.00-5.00-----------------------1.00----1.00--1.00-----------------------1.00-1.00-----1.00----1.001.00-------
........................................................................................................................AGAACGACGGGCAGAGGCGCGA............................................................................................................2217.007.00--1.00--1.00--------1.00-----1.00----------------------------------1.001.00-----------------1.00----
.......................................................................................................................CAGAACGACGGGCAGAGGCGC..............................................................................................................2115.005.00-------1.00--1.00-1.00--------1.00----------------------1.00----------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCG...............................................................................................................2015.005.00----1.00-----1.00----------1.00-----1.00---------------1.00-----------------------------------
.............................................................................................................GAGCTTGGCCCAGAACGAC..........................................................................................................................1914.004.004.00------------------------------------------------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCG.............................................................................................................2213.003.00-------------1.00--------------------------------------------1.00--1.00-----------------
........................................................................................................................AGAACGACGGGCAGAGGCG...............................................................................................................1912.002.00-----1.001.00------------------------------------------------------------------------
............................................................................................................................CGACGGGCAGAGGCGCGAATAA........................................................................................................222.000.00---2.00---------------------------------------------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCTAT...........................................................................................................2412.005.00--1.00-----------------1.00----------------------------------------------------------
........................................................................................................................AGAACGACGGGCAGAGGCGCTT............................................................................................................2212.001.00---------2.00---------------------------------------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCGATT..........................................................................................................2512.0015.00---------------2.00---------------------------------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCAAAA..........................................................................................................2511.005.00--------------------------------1.00----------------------------------------------
......................................................................................................................................................CTCCCCAGGGGGGTCGCGC.................................................................................191.000.00-----------1.00-------------------------------------------------------------------
............................................TTCACGGTGAGTGAGTTCT...........................................................................................................................................................................................191.000.00------------------------------------------------1.00------------------------------
......................................................................................................................................................................................................GAGAACTAAGGAAGCAAAACC...............................2111.001.00-----------------------------------------------1.00-------------------------------
.....................................CCAGCGCTTCACGGTGAGTGA................................................................................................................................................................................................2111.001.00-------1.00-----------------------------------------------------------------------
.....................................................................................................................CCCAGAACGACGGGCAGAGGCT...............................................................................................................221.000.00------1.00------------------------------------------------------------------------
...................................................................................................................................................................................................CTTGAGAACTAAGGAAGCAAAACCA..............................2511.001.00--------------------------------------1.00----------------------------------------
...............................................................................................................................CGGGCAGAGGCGCGAA...........................................................................................................161.000.00----------------------------------------------------------------------------1.00--
......................................................................................................................................................................................................................AAACCATGTCGGTCAGTGAGGTAC............2411.001.00-------------------------------------------------------------------------1.00-----
.....................................................................................................................CCCAGAACGACGGGCAGAGAAC...............................................................................................................221.000.00---------------------------------------------------1.00---------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCCTT.............................................................................................................221.000.00----------------------1.00--------------------------------------------------------
........................................................................................................................AGAACGACGGGCAGAGGCGCG.............................................................................................................2111.001.00------1.00------------------------------------------------------------------------
........................................................................................................................AGAACGACGGGCAGAGGCGCGATA..........................................................................................................2411.007.00---------------------------------------------1.00---------------------------------
........................................................................................................................AGAACGACGGGCAGAGGCGC..............................................................................................................2011.001.00------------1.00------------------------------------------------------------------
.....................................................................................................................CCCAGAACGACGGGCAGAGGCGTA.............................................................................................................2411.001.00-------------1.00-----------------------------------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCTT............................................................................................................2311.005.00------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................................................TGAGGTACTGTATGGAGC..1811.001.00-------------------------------------------------------------------1.00-----------
....................................................................................................................................AGAGGCGCGAGGTCTT......................................................................................................1611.001.00-----------------------------------------------------1.00-------------------------
....................................................................................................................................AGAGGCGCGAGGTCTTGTGCTC................................................................................................221.000.00----------------------------------------------1.00--------------------------------
.............................................................................................................GAGCTTGGCCCAGAACGCC..........................................................................................................................191.000.001.00------------------------------------------------------------------------------
..................................................................................................................TGGCCCAGAACGACGGGCAGAGGC................................................................................................................2411.001.00-----------1.00-------------------------------------------------------------------
.....................................................................................................................CCCAGAACGACGGGCAGAGGCG...............................................................................................................2211.001.00------------------------------------------------------------------1.00------------
..........................................................................................................................AACGACGGGCAGAGGCGCCA............................................................................................................201.000.00------------------1.00------------------------------------------------------------
.....................................................................................................................CCCAGAACGACGGGCAGAGATT...............................................................................................................221.000.00----------------------------1.00--------------------------------------------------
.....................................................................................................................CCCAGAACGACGGGCAGAGGCTAT.............................................................................................................241.000.00--1.00----------------------------------------------------------------------------
........................................................................................................................AGAACGACGGGCAGAGGCGCGAT...........................................................................................................2311.007.00-------------------------------1.00-----------------------------------------------
...............................TGGCGACCAGCGCTTCACG........................................................................................................................................................................................................1911.001.00----------------1.00--------------------------------------------------------------
.......................................................................................................................................................................TACCACCCAGAACCCAGCAG...............................................................2011.001.00--------------------------------------------------1.00----------------------------
................................................................................................................................................TCTTGTCTCCCCAGGCAG........................................................................................181.000.00----------------1.00--------------------------------------------------------------
.....................................................................................................................CCCAGAACGACGGGCAG....................................................................................................................1711.001.00---1.00---------------------------------------------------------------------------
.............................ATTGGCGACCAGCGCTTCACGG.......................................................................................................................................................................................................2211.001.00-------------------------------------1.00-----------------------------------------
........................................................................................................................................................................ACCACCCAGAACCCAGCAGACCTGGCCCCTG...................................................311.000.00-----------------1.00-------------------------------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCGT............................................................................................................2311.003.00---------------------------------------1.00---------------------------------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGT..............................................................................................................2111.005.00-----1.00-------------------------------------------------------------------------
.....................TGGGCAGCATTGGCGACCAGCGCTTCACGGCTC....................................................................................................................................................................................................331.000.00-----------------1.00-------------------------------------------------------------
.............................ATTGGCGACCAGCGCTTCACGGT......................................................................................................................................................................................................2311.001.00------------------------------------------------------------------------1.00------
.......................................................................................................................................................................................................................................GAGGTACTGTATGGAAAA.181.000.00---------------------------------------------------------------------------1.00---
......................................................................................................................................................................................AGCAGACCTGGCCCTTGAGAACT.............................................2311.001.00---------------------------------------------------------------1.00---------------
.......................................................................................................................CAGAACGACGGGCAGAGGCGCTTT...........................................................................................................2411.005.00----------------------------------------------------------------1.00--------------
........................................................................................................................................................................ACCACCCAGAACCCAG..................................................................1660.170.17------------------------------------------------------------------------------0.17

Antisense strand
CTGGCGACCACTGCTTCTCCGTGGGCAGCATTGGCGACCAGCGCTTCACGGTGAGTGAGGGAGGCCCTCGCGTCGCCCGTGGCCCGGCCTTTGCCCGTCATTCTGGGCCGAGCTTGGCCCAGAACGACGGGCAGAGGCGCGAGGTCTTGTCTCCCCAGGGGGGTCCTTACCACCCAGAACCCAGCAGACCTGGCCCTTGAGAACTAAGGAAGCAAAACCATGTCGGTCAGTGAGGTACTGTATGGAGCCT
....................................................................................................................((((........))))...((...((((.(((.(((....))).))).)))).))...............................................................................
..................................................................................................................115.......................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................CGGGCAAAGGCCGGGCCACGGGCGAC......................................................................................................................................................... 2612.002.00-------------------2.00-----------------------------------------------------------
........................................................GAGGGAGGCCCTCGCGGCC............................................................................................................................................................................... 191.000.00-----------------------1.00-------------------------------------------------------
...................................................................................CCGGCCTTTGCCCGTCATTCTT................................................................................................................................................. 221.000.00----------------------------------1.00--------------------------------------------
.........................CGCTGGTCGCCAATGCTG............................................................................................................................................................................................................... 1811.001.00-----------------------------------------------------------------------------1.00-
...................................................................TCGCGTCGCCCGTGGCACT.................................................................................................................................................................... 191.000.00------------------------1.00------------------------------------------------------
.....................................................................................................................CGCCTCTGCCCGTCGTTCTGGG............................................................................................................... 2211.001.00-------------------------------------------------1.00-----------------------------
..................................................................................CCCGGCCTTTGCCCGTCATTCTT................................................................................................................................................. 231.000.00--------------1.00----------------------------------------------------------------
..................................................................................CCCGGCCTTTGCCCGTCATTCTTTCT.............................................................................................................................................. 261.000.00------------------------------------------------------------1.00------------------
.........................................................................CGCCCGTGGCCCGGCCCTA.............................................................................................................................................................. 191.000.00-----------------------------------------1.00-------------------------------------
...................................................................................CCGGCCTTTGCCCGTCATTCTTA................................................................................................................................................ 231.000.00------------------------------------1.00------------------------------------------