ID: uc003kqn.2_intron_27_0_chr5_112927876_f.5p
GENE: (28)
chr5:112927826-112928075+


(1)
AGO1.ip
(1)
B-CELL
(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(1)
HELA
(3)
LIVER
(3)
OTHER
(4)
SKIN
(1)
TESTES

Sense strand
TCAATCCATGGAATGACAACAAGAAAGTGCAGATAAGCAGGGATGGGCAGGTATACAATGGCATTTTTTTTTTTATTTACTTTTGTTTCTGTTTGTTTTCTGTTATCCAGTGCTTTAATTGAGGAGAAAATGTAAGAGTACAAATTTTATATTCCATATGCACATGGGAAACAGGGGTTCAGGTTTGTAAAAAGATAGTAAAAACCTACTTGTAAATGTGTCTGATTGCTCCTTGCAGTCAGAGTCTCAA
............................................................(((((((((((((.(((.......((..(((..((........))..))).))...))).))))))))))))).....................................................................................................................
.........................................................58...................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................ATTTTTTTTTTTATTTACCAAT......................................................................................................................................................................225.000.00--3.00---1.001.00----------------
..............................................................................ACTTTTGTTTCTGTTTGTTTTCTGTTACCC..............................................................................................................................................304.000.003.001.00----------------------
................................................................................TTTTGTTTCTGTTTGTTTTAC.....................................................................................................................................................213.000.003.00-----------------------
...............................................................................CTTTTGTTTCTGTTTGTTTTCTTGTT.................................................................................................................................................262.000.001.001.00----------------------
...............................................................................CTTTTGTTTCTGTTTGTTTTTTTG...................................................................................................................................................242.000.001.001.00----------------------
...................................AGCAGGGATGGGCAGGTACAC..................................................................................................................................................................................................212.000.00-2.00----------------------
..............................................................ATTTTTTTTTTTATTTACAAAG......................................................................................................................................................................222.000.00------1.001.00----------------
.............................................................................................................................................................ATGCACATGGGAAACAGGGGTTCAGGT..................................................................2712.002.00-2.00----------------------
....................................................................................................................AATTGAGGAGAAAATGTAAGAGT...............................................................................................................2312.002.00----------2.00-------------
.........................................................ATGGCATTTTTTTTTTTATTTACTTTTG.....................................................................................................................................................................2812.002.00-2.00----------------------
........TGGAATGACAACAAGTACG...............................................................................................................................................................................................................................191.000.00------------------1.00-----
............................................................................TTACTTTTGTTTCTGTTTGTTTTCTGTTACCC..............................................................................................................................................321.000.001.00-----------------------
....................................GCAGGGATGGGCAGGTATACAA................................................................................................................................................................................................2211.001.00---------1.00--------------
...........................................................................TTTACTTTTGTTTCTGTTTGTTTTTCTT...................................................................................................................................................281.000.00-1.00----------------------
................................................................................TTTTGTTTCTGTTTGTTTTGC.....................................................................................................................................................211.000.001.00-----------------------
................................................................................TTTTGTTTCTGTTTGTTTACC.....................................................................................................................................................211.000.001.00-----------------------
...ATCCATGGAATGACAACA.....................................................................................................................................................................................................................................1811.001.00-----------1.00------------
...............................................................................CTTTTGTTTCTGTTTGTTTTTCTG...................................................................................................................................................241.000.00-1.00----------------------
..........................GTGCAGATAAGCAGGGATGGG...........................................................................................................................................................................................................2111.001.00-------------1.00----------
............ATGACAACAAGAAAGCTCG...........................................................................................................................................................................................................................191.000.00---------------1.00--------
................................................................................TTTTGTTTCTGTTTGTTTTCAC....................................................................................................................................................221.000.001.00-----------------------
....TCCATGGAATGACAACAAGAAAGTGCA...........................................................................................................................................................................................................................2711.001.00-----------------1.00------
.............................................................CATTTTTTTTTTTATTTACTTTTGTTTCTGTTC............................................................................................................................................................331.000.001.00-----------------------
..........................................................................ATTTACTTTTGTTTCTGTTTGTTTTCCGTT..................................................................................................................................................301.000.00-1.00----------------------
.............................................................CATTTTTTTTTTTATTTACTTAAAG....................................................................................................................................................................251.000.00----1.00-------------------
.............................................................................TACTTTTGTTTCTGTTTGTTTTCTGTG..................................................................................................................................................271.000.00-1.00----------------------
.........................................................ATGGCATTTTTTTTTTTATTTACC.........................................................................................................................................................................241.000.00-1.00----------------------
.....................................................................TTTTTATTTACTTTTGGAGC.................................................................................................................................................................201.000.00-1.00----------------------
.....................AGAAAGTGCAGATAAGCAGGGACGGG...........................................................................................................................................................................................................261.000.001.00-----------------------
...............................................................................CTTTTGTTTCTGTTTGTTTTGTT....................................................................................................................................................231.000.001.00-----------------------
..............................................................................ACTTTTGTTTCTGTTACCC.........................................................................................................................................................191.000.00-1.00----------------------
................................................................................TTTTGTTTCTGTTTGTTTAC......................................................................................................................................................201.000.001.00-----------------------
..............................................................ATTTTTTTTTTTATTTAAAT........................................................................................................................................................................201.000.00------1.00-----------------
................................................................................TTTTGTTTCTGTTTGTTTGAG.....................................................................................................................................................211.000.00-1.00----------------------
.....................................................................TTTTTATTTACTTTTGGTG..................................................................................................................................................................191.000.001.00-----------------------
..............................................................................ACTTTTGTTTCTGTTTGTTTTCTGTC..................................................................................................................................................261.000.001.00-----------------------
.......................................................CAATGGCATTTTTTTTTTTATTTACTTCTG.....................................................................................................................................................................301.000.001.00-----------------------
.............................................................CATTTTTTTTTTTATTTATTG........................................................................................................................................................................211.000.00--1.00---------------------
..............................................................ATTTTTTTTTTTATTTACTTTG......................................................................................................................................................................221.000.00----1.00-------------------
..............................................................ATTTTTTTTTTTATTTACTAAG......................................................................................................................................................................221.000.00--1.00---------------------
....................................................................................................................................................................TGGGAAACAGGGGTTCAT....................................................................181.000.00--------------1.00---------
.....................................................................................................................ATTGAGGAGAAAATGGT....................................................................................................................171.000.00-----1.00------------------
.............................................................CATTTTTTTTTTTATTTACTTATTT....................................................................................................................................................................251.000.00----1.00-------------------
..........GAATGACAACAAGAAGTA..............................................................................................................................................................................................................................181.000.00-------------------1.00----
.......................................................................................................TATCCAGTGCTTTAATTG.................................................................................................................................1811.001.00------------1.00-----------
................................................................................TTTTGTTTCTGTTTGTATAA......................................................................................................................................................201.000.00-----1.00------------------
...............................................................................CTTTTGTTTCTGTTTGTTTTCTGTC..................................................................................................................................................251.000.001.00-----------------------
.............................................................CATTTTTTTTTTTATTTACTTTTG.....................................................................................................................................................................2411.001.00----1.00-------------------
...............................GATAAGCAGGGATGGGCAGGTATA...................................................................................................................................................................................................2411.001.00---------1.00--------------
..............................................................ATTTTTTTTTTTATTTAACA........................................................................................................................................................................201.000.00---1.00--------------------
.............................................................CATTTTTTTTTTTATTTACATTG......................................................................................................................................................................231.000.00--1.00---------------------
...........................................................GGCATTTTTTTTTTTATTTTTCC........................................................................................................................................................................231.000.001.00-----------------------
........................................................AATGGCATTTTTTTTTTTAGTG............................................................................................................................................................................221.000.001.00-----------------------
....................................................................................................................................................................TGGGAAACAGGGGTTCAGGTTCGTA.............................................................251.000.001.00-----------------------
.........................................................ATGGCATTTTTTTTTTTATTTACTTTCGTC...................................................................................................................................................................301.000.001.00-----------------------
..........................................................................ATTTACTTTTGTTTCTAAAT............................................................................................................................................................201.000.00---1.00--------------------
..............................................................ATTTTTTTTTTTATTTACCTTG......................................................................................................................................................................221.000.00-------1.00----------------
.................AACAAGAAAGTGCAGAACCT.....................................................................................................................................................................................................................201.000.00--------------------1.00---
.........................................................ATGGCATTTTTTTTTTTATTTACTCGTT.....................................................................................................................................................................281.000.00-1.00----------------------
......................................................................TTTTATTTACTTTTGTTTCTGTTTG...........................................................................................................................................................2511.001.001.00-----------------------
..............................................................ATTTTTTTTTTTATTTACCCAG......................................................................................................................................................................221.000.00----1.00-------------------
................................................................................TTTTGTTTCTGTTTGTTTTCGGC...................................................................................................................................................231.000.00-1.00----------------------
...................................................................TTTTTTTATTTACTTTTGTTTCT................................................................................................................................................................2311.001.00-1.00----------------------
...................................................TATACAATGGCATTTTTCT....................................................................................................................................................................................191.000.00---1.00--------------------
................................................................................TTTTGTTTCTGTTTGTTTTGCT....................................................................................................................................................221.000.001.00-----------------------
.........................................................ATGGCATTTTTTTTTTTCATT............................................................................................................................................................................211.000.001.00-----------------------
..............................................................ATTTTTTTTTTTATTTACCAAA......................................................................................................................................................................221.000.00------1.00-----------------
................................................................TTTTTTTTTTATTTACTTTTGTTTCCG...............................................................................................................................................................271.000.00---1.00--------------------
.........................................................ATGGCATTTTTTTTTTTATTTACTTTCG.....................................................................................................................................................................281.000.001.00-----------------------
................................................................TTTTTTTTTTATTTACTTTGGG....................................................................................................................................................................2260.500.17-0.50----------------------
...............................................................TTTTTTTTTTTATTTACTTT.......................................................................................................................................................................2040.250.25---0.25--------------------
................................................................TTTTTTTTTTATTTACTTT.......................................................................................................................................................................1960.170.17---0.17--------------------
..........................................................................................GTTTGTTTTCTGTTATC...............................................................................................................................................1790.110.11-----------------------0.11
...............................................................TTTTTTTTTTTATTTACTT........................................................................................................................................................................1990.110.11-------0.11----------------
.................................TAAGCAGGGATGGGC..........................................................................................................................................................................................................1590.110.11----------------------0.11-

Antisense strand
TCAATCCATGGAATGACAACAAGAAAGTGCAGATAAGCAGGGATGGGCAGGTATACAATGGCATTTTTTTTTTTATTTACTTTTGTTTCTGTTTGTTTTCTGTTATCCAGTGCTTTAATTGAGGAGAAAATGTAAGAGTACAAATTTTATATTCCATATGCACATGGGAAACAGGGGTTCAGGTTTGTAAAAAGATAGTAAAAACCTACTTGTAAATGTGTCTGATTGCTCCTTGCAGTCAGAGTCTCAA
............................................................(((((((((((((.(((.......((..(((..((........))..))).))...))).))))))))))))).....................................................................................................................
.........................................................58...................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
....................AAGAAAGTGCAGATAAATG................................................................................................................................................................................................................... 191.000.00-----1.00------------------
...........................................................................................................................................................................................TAAAAAGATAGTAAAAAAAT........................................... 201.000.00-----1.00------------------
...........................................................................................................................................................................................TAAAAAGATAGTAAAATTCT........................................... 201.000.00---1.00--------------------
......................................................................................................TTATCCAGTGCTTTAATC.................................................................................................................................. 181.000.00--------1.00---------------
......................CCTGCTTATCTGCACTTTC................................................................................................................................................................................................................. 1911.001.00----------------1.00-------
.................................................................TTTTTTTTTATTTACTTGG...................................................................................................................................................................... 191.000.00--------1.00---------------
..................................................................................................GCACTGGATAACAGA......................................................................................................................................... 1550.200.20---------------------0.20--