ID: uc003kos.3_intron_8_0_chr5_108719222_r.5p
GENE: (1)
chr5:108745343-108745592-


(1)
AGO2.ip
(5)
B-CELL
(1)
BRAIN
(10)
BREAST
(23)
CELL-LINE
(3)
CERVIX
(4)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(13)
SKIN
(1)
XRN.ip

Sense strand
CGGGTGGAGGTTCGAGCGCTGTTCTCGCTCCGGAGCCGCTGCACATTTCGGTGAGGGTTTTTTTTTTTTTTTTTCAGTCTGGCTTGTTCCGCTGTCGGGAGTGTGGGGGTCGGGGCGAGGAAATTGCTGCGTTCAGCTCCTCAGTTTCTCTGTCTCTAGCTTCGGAAGGAGCGGGGCTTGTCCCTGGCCTGCTGCGCCGGCCATGGTGGGTGGGGTTGATGGCTGTGGGAGGCCTTCTTCGCCTCCTGGG
...................................................((((((.............)))))).((((((..........)))))).......................................................................................................................................................
..................................................51.....................................................106..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR343335SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR029126(GSM416755)
143B. (cell line)
.....................................................AGGGTTTTTTTTTTTTTTTTTCTAC............................................................................................................................................................................2513.000.007.006.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTTAC...........................................................................................................................................................................269.000.008.001.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTTTC...........................................................................................................................................................................265.000.003.002.00----------------------------------------------------------------
...............GCGCTGTTCTCGCTCCGGAG.......................................................................................................................................................................................................................2014.004.00---3.00----------------------------------1.00---------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTGC............................................................................................................................................................................253.000.001.002.00----------------------------------------------------------------
......GAGGTTCGAGCGCTGTTCTC................................................................................................................................................................................................................................2013.003.00-----1.002.00-----------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCAGGAC..........................................................................................................................................................................273.000.002.001.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTTGC...........................................................................................................................................................................262.000.001.001.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCGAC............................................................................................................................................................................252.000.002.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCGC.............................................................................................................................................................................242.000.002.00-----------------------------------------------------------------
.....................................................................................GTTCCGCTGTCGGGAGTGTG.................................................................................................................................................2012.002.00------------------1.00----------------1.00------------------------------
..............AGCGCTGTTCTCGCTCCGG.........................................................................................................................................................................................................................1912.002.00-----2.00------------------------------------------------------------
..........................................................................CAGTCTGGCTTGTTCCG...............................................................................................................................................................1712.002.00----1.00-----------------------1.00-------------------------------------
...................................................TGAGGGTTTTTTTTTTTTCCC..................................................................................................................................................................................211.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTCCGC................................................................................................................................................................................231.000.00-1.00----------------------------------------------------------------
...GTGGAGGTTCGAGCGCTG.....................................................................................................................................................................................................................................1811.001.00---1.00--------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTTTA...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTACT..............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
..................CTGTTCTCGCTCCGGAG.......................................................................................................................................................................................................................1711.001.00----1.00-------------------------------------------------------------
..................................GCCGCTGCACATTTCGGTGAG...................................................................................................................................................................................................2111.001.00-----------------------------1.00------------------------------------
................................GAGCCGCTGCACATTTCGGAATC...................................................................................................................................................................................................231.000.00---------------------------------1.00--------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTCCC...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTGCC...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTCTAC.................................................................................................................................................................................221.000.00-1.00----------------------------------------------------------------
...........................................................TTTTTTTTTTTTTTTCAGTCTGGGC......................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTGCCC.............................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
.......................CTCGCTCCGGAGCCGCTGCAC..............................................................................................................................................................................................................2111.001.001.00-----------------------------------------------------------------
..........................................................................................................................................................................................................................ATGGCTGTGGGAGGCCGTAT............201.000.00-----------------1.00------------------------------------------------
...GTGGAGGTTCGAGCGCCG.....................................................................................................................................................................................................................................181.000.00---1.00--------------------------------------------------------------
.........................CGCTCCGGAGCCGCTGCACATTT..........................................................................................................................................................................................................2311.001.00----------------------------------1.00-------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCGGTC...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCAGC............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
.GGGTGGAGGTTCGAGCGCT......................................................................................................................................................................................................................................1911.001.00------------------1.00-----------------------------------------------
.......................................................................................TCCGCTGTCGGGAGTGTG.................................................................................................................................................1811.001.00---------1.00--------------------------------------------------------
..............................................................TTTTTTTTTTTTCAGTCGTTG.......................................................................................................................................................................211.000.00--------------------1.00---------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTCCCC.............................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
....................................................GAGGGTTTTTTTTTTTTTTTTTCAG.............................................................................................................................................................................2511.001.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTAGCT...............................................................................................................................................................................221.000.001.00-----------------------------------------------------------------
..................CTGTTCTCGCTCCGGAGCCGCTGC................................................................................................................................................................................................................2411.001.00--------------------------------------------1.00---------------------
......................................................................................................GTGGGGGTCGGGGCGAGGAATA..............................................................................................................................221.000.00--1.00---------------------------------------------------------------
..................................................................................................................................................................................................................TGGGGTTGATGGCTGTATAG....................201.000.00------------1.00-----------------------------------------------------
................CGCTGTTCTCGCTCCGGAGCC.....................................................................................................................................................................................................................2111.001.00------------------------------------1.00-----------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTATCT..............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
.........GTTCGAGCGCTGTTCTC................................................................................................................................................................................................................................1711.001.00-------------------------------------------1.00----------------------
....................GTTCTCGCTCCGGAGCCGCTGCA...............................................................................................................................................................................................................2311.001.00--------------------------1.00---------------------------------------
.......................CTCGCTCCGGAGCCGCTGCACATT...........................................................................................................................................................................................................2411.001.00----------------1.00-------------------------------------------------
..GGTGGAGGTTCGAGCGCTG.....................................................................................................................................................................................................................................1911.001.00-----------------1.00------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTCCTT.............................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTGGGG.............................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
................................................................................GGCTTGTTCCGCTGTCGGGAG.....................................................................................................................................................2111.001.00---------------------------------------------1.00--------------------
.......................................................................................TCCGCTGTCGGGAGTGTGGGGGTCGGGGCGAA...................................................................................................................................321.000.00----------------------------------------------1.00-------------------
..............................................................................CTGGCTTGTTCCGCTGTCGGGAGGGT..................................................................................................................................................261.000.00---------------------------------------------------------1.00--------
..............................................................................CTGGCTTGTTCCGCTGTCGGGA......................................................................................................................................................2211.001.00-------------------------------------------------------------1.00----
.....................................................AGGGTTTTTTTTTTTTTTTTTCAGG............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTTAT...........................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------
......................................................GGGTTTTTTTTTTTTTTTTTCAGTTT..........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
........................................................................TTCAGTCTGGCTTGTTCCGCT.............................................................................................................................................................2111.001.00----------------1.00-------------------------------------------------
.......................................................................TTTCAGTCTGGCTTGTTCCG...............................................................................................................................................................2011.001.00----------1.00-------------------------------------------------------
................CGCTGTTCTCGCTCCGGAG.......................................................................................................................................................................................................................1911.001.00-------------------------------1.00----------------------------------
..................................................................................................GAGTGTGGGGGTCGGACT......................................................................................................................................181.000.00----------1.00-------------------------------------------------------
.......................CTCGCTCCGGAGCCGCTGC................................................................................................................................................................................................................1911.001.00------------------------------------------------------------1.00-----
...................................................TGAGGGTTTTTTTTTTTTTTCTGC...............................................................................................................................................................................241.000.00-1.00----------------------------------------------------------------
........................................................................TTCAGTCTGGCTTGTTCCG...............................................................................................................................................................1911.001.00--------------1.00---------------------------------------------------
.................GCTGTTCTCGCTCCGGAGC......................................................................................................................................................................................................................1911.001.00-------------------------------------1.00----------------------------
...................................................TGAGGGTTTTTTTTTTTTTTCTTG...............................................................................................................................................................................241.000.00-1.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCGGTG...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
.......................................................GGTTTTTTTTTTTTTTTTTCGGC............................................................................................................................................................................231.000.001.00-----------------------------------------------------------------
........................................................................TTCAGTCTGGCTTGTTCCGC..............................................................................................................................................................2011.001.00-----1.00------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTCCTT...............................................................................................................................................................................241.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTACC...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
..................CTGTTCTCGCTCCGGAGC......................................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTCAC..............................................................................................................................................................................251.000.00-1.00----------------------------------------------------------------
............................................................................................................GTCGGGGCGAGGAAATTGC...........................................................................................................................1911.001.00------------------------------1.00-----------------------------------
...............GCGCTGTTCTCGCTCCGTAG.......................................................................................................................................................................................................................201.000.00--------------------------------1.00---------------------------------
................................................................................GGCTTGTTCCGCTGTCGGGA......................................................................................................................................................2011.001.00---------1.00--------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCGCC............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
.......AGGTTCGAGCGCTGTTCT.................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------1.00---------
...................................................TGAGGGTTTTTTTTTTTTTGTTT................................................................................................................................................................................231.000.001.00-----------------------------------------------------------------
.........................................................................................................GGGGTCGGGGCGAGGTGA...............................................................................................................................181.000.00-----------------------------------------------------------1.00------
.............................................................TTTTTTTTTTTTTCAGTCTGGC.......................................................................................................................................................................2211.001.001.00-----------------------------------------------------------------
....................................................GAGGGTTTTTTTTTTTTACT..................................................................................................................................................................................201.000.00-1.00----------------------------------------------------------------
..................................................GTGAGGGTTTTTTTTTTTTTTTTGG...............................................................................................................................................................................251.000.00--------------------1.00---------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTATC...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCGCT............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
....................................................GAGGGTTTTTTTTTTTTTTCCC................................................................................................................................................................................221.000.001.00-----------------------------------------------------------------
.......................................................................................TCCGCTGTCGGGAGTGTGG................................................................................................................................................1911.001.00-----------------------------------------------------1.00------------
.GGGTGGAGGTTCGAGCGC.......................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------1.00--
..............................................................................................................................................................................GGCTTGTCCCTGGCCTGCTGCG......................................................2211.001.00----1.00-------------------------------------------------------------
....................GTTCTCGCTCCGGAGCCGCTGCAC..............................................................................................................................................................................................................2411.001.00------------------------------------------1.00-----------------------
..................................................................................................................................................................................................................TGGGGTTGATGGCTGTGTTG....................201.000.00-----------------------------------------------1.00------------------
......................TCTCGCTCCGGAGCCGCTGCA...............................................................................................................................................................................................................2111.001.00---------------------------------------------------1.00--------------
........................................................GTTTTTTTTTTTTTTTTTCACTTG..........................................................................................................................................................................241.000.00---------------------1.00--------------------------------------------
............................................ATTTCGGTGAGGGTTTTTTTTTTTTC....................................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
................................................................................................................................................................TTCGGAAGGAGCGGGGCT........................................................................1811.001.00--------------------------------------------------1.00---------------
............................................................TTTTTTTTTTTTTTCAGTCTTTTC......................................................................................................................................................................241.000.001.00-----------------------------------------------------------------
...............................................................................................................................................................CTTCGGAAGGAGCGGGGCTTG......................................................................2111.001.00-------------------------------------------------------1.00----------
......................................................................................................GTGGGGGTCGGGGCGAGGAAATTCTG..........................................................................................................................261.000.00----------------------------------------------------------1.00-------
...................................................TGAGGGTTTTTTTTTTTTTTTTTAGGA............................................................................................................................................................................271.000.00-1.00----------------------------------------------------------------
............................................................TTTTTTTTTTTTTTCAGTCTGC........................................................................................................................................................................221.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTCTT..............................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTGAG................................................................................................................................................................................231.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTGCT...........................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCACAG...........................................................................................................................................................................2691.000.221.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTAC.................................................................................................................................................................................221.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTGAGG................................................................................................................................................................................231.000.001.00-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTCTG................................................................................................................................................................................231.000.00-1.00----------------------------------------------------------------
.......................................................GGTTTTTTTTTTTTTTTTTCGGGG...........................................................................................................................................................................241.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTGAC...........................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------
.........................................................TTTTTTTTTTTTTTTTTCAGTCGCT........................................................................................................................................................................251.000.001.00-----------------------------------------------------------------
...........................................................................................................................................CTCAGTTTCTCTGTCTCTAGCTTCGGAAG..................................................................................2911.001.00-------------------------1.00----------------------------------------
....................................................................TTTTTTCAGTCTGGCTTCCTC.................................................................................................................................................................211.000.00-1.00----------------------------------------------------------------
.......................................................GGTTTTTTTTTTTTTTTTTCGGTT...........................................................................................................................................................................241.000.00-1.00----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCTGGG...........................................................................................................................................................................261.000.001.00-----------------------------------------------------------------
.............................CCGGAGCCGCTGCAC..............................................................................................................................................................................................................1511.001.00------------------------------------------------------1.00-----------
..........................................................................................GCTGTCGGGAGTGTGGGGGT............................................................................................................................................2011.001.00----------------------------------------------------1.00-------------
.........................................................................................................GGGGTCGGGGCGAGGAAGCT.............................................................................................................................201.000.00--------------------------------------------------------------1.00---
...............GCGCTGTTCTCGCTCCGGA........................................................................................................................................................................................................................1911.001.00-----------------------1.00------------------------------------------
.........................................................................................................GGGGTCGGGGCGAGGAAATTG............................................................................................................................2111.001.00----------------------------------------------------------------1.00-
........................................................GTTTTTTTTTTTTTTTTTCACCG...........................................................................................................................................................................231.000.001.00-----------------------------------------------------------------
.......................................................GGTTTTTTTTTTTTTTTTTCGTCC...........................................................................................................................................................................241.000.001.00-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTACGG...............................................................................................................................................................................221.000.001.00-----------------------------------------------------------------
................................................................................................................................................................TTCGGAAGGAGCGGGGCA........................................................................1820.500.50---------0.50--------------------------------------------------------
................................................................................................................................................................TTCGGAAGGAGCGGGGC.........................................................................1720.500.50----0.50-------------------------------------------------------------
...............................................................................................CGGGAGTGTGGGGGTCG..........................................................................................................................................1720.500.50-----------------------0.50------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCA..............................................................................................................................................................................2390.220.220.110.11----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTTCTCT............................................................................................................................................................................2760.170.170.17-----------------------------------------------------------------
...................................................TGAGGGTTTTTTTTTTTTTTTTTC...............................................................................................................................................................................2460.170.170.17-----------------------------------------------------------------
...................................................................................................AGTGTGGGGGTCGGG........................................................................................................................................1570.140.14----0.14-------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCACTTC..........................................................................................................................................................................2790.110.220.11-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCACG............................................................................................................................................................................2590.110.220.11-----------------------------------------------------------------
.....................................................AGGGTTTTTTTTTTTTTTTTTCAAC............................................................................................................................................................................2590.110.220.11-----------------------------------------------------------------

Antisense strand
CGGGTGGAGGTTCGAGCGCTGTTCTCGCTCCGGAGCCGCTGCACATTTCGGTGAGGGTTTTTTTTTTTTTTTTTCAGTCTGGCTTGTTCCGCTGTCGGGAGTGTGGGGGTCGGGGCGAGGAAATTGCTGCGTTCAGCTCCTCAGTTTCTCTGTCTCTAGCTTCGGAAGGAGCGGGGCTTGTCCCTGGCCTGCTGCGCCGGCCATGGTGGGTGGGGTTGATGGCTGTGGGAGGCCTTCTTCGCCTCCTGGG
...................................................((((((.............)))))).((((((..........)))))).......................................................................................................................................................
..................................................51.....................................................106..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR343335SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR029126(GSM416755)
143B. (cell line)
........................................................................................................................................................................................................................................CCTTCTTCGCCTCCTACG 183.000.00--------3.00---------------------------------------------------------
.........................................................................................................................................TCCTCAGTTTCTCTGCATC.............................................................................................. 193.000.00-------3.00----------------------------------------------------------
..................................................................................................................................................................................GCCGGCGCAGCAGGCCAGGGACA................................................. 2312.002.00--2.00---------------------------------------------------------------
......................................................................................................................................................................................................................GTTGATGGCTGTGGGG.................... 162.000.00---------------2.00--------------------------------------------------
...........................................................................................................................................................................CAGGCCAGGGACAAGCCCCG........................................................... 2012.002.00--2.00---------------------------------------------------------------
.................................................................................................................................AGACAGAGAAACTGAGGAGCTGAACG............................................................................................... 2612.002.00------2.00-----------------------------------------------------------
....................................................................................................................................................................................CGGCGCAGCAGGCCAGGGA................................................... 1912.002.00-------------------2.00----------------------------------------------
....................CTCCGGAGCGAGAAC....................................................................................................................................................................................................................... 1541.251.25------------------------1.25-----------------------------------------
...................................................................................................................................GAGAAACTGAGGAGCTGAA.................................................................................................... 1911.001.00-----------1.00------------------------------------------------------
......................................................................................................................................................................................................................................GGCCTTCTTCGCCTCG.... 161.000.00---------------------1.00--------------------------------------------
............................................................................................................................................TCAGTTTCTCTGTCTAGCA........................................................................................... 191.000.00----------------------------------------1.00-------------------------
................TCCGGAGCGAGAACAGCG........................................................................................................................................................................................................................ 1811.001.00-----------------------------------------1.00------------------------
......................................................................................................................................................................................................CCCACAGCCATCAACCCCACCCACCATGGCC..................... 3111.001.00---------------------------1.00--------------------------------------
..............................................................................................................................AAACTGAGGAGCTGAACGCAG....................................................................................................... 2111.001.00--1.00---------------------------------------------------------------
...........................................................TTTTTTTTTTTTTTTCAGTTGT......................................................................................................................................................................... 221.000.00------------------------------------------------1.00-----------------
..................................................................AAGCCAGACTGAAAAAAAA..................................................................................................................................................................... 1911.001.00---------------------------------------1.00--------------------------
................................................................AAGCCAGACTGAAAAAAAAAA..................................................................................................................................................................... 2111.001.00----------------------1.00-------------------------------------------
...................................................................................................................................AGAAACTGAGGAGCTGAA..................................................................................................... 1811.001.00--------------1.00---------------------------------------------------
......................................................................................................................................................................................................................................GGCCTTCTTCGCCTCGTG.. 181.000.00-------------------------------------------------1.00----------------
..................................................................................CGACAGCGGAACAAG......................................................................................................................................................... 1511.001.00----1.00-------------------------------------------------------------
...........................................................TTTTTTTTTTTTTTTCAGTCTTT........................................................................................................................................................................ 231.000.00----------------------1.00-------------------------------------------
...................................................................................................................................................................................................................................GGAGGCCTTCTTCGCAGGT.... 191.000.00------------1.00-----------------------------------------------------
............................................................TTTTTTTTTTTTTTCAGTTTTT........................................................................................................................................................................ 221.000.00-------------1.00----------------------------------------------------
...........................................................TTTTTTTTTTTTTTTCAGTTTTT........................................................................................................................................................................ 231.000.00-------------1.00----------------------------------------------------
................................................................................................................................GAAACTGAGGAGCTGAACGC...................................................................................................... 2011.001.00-----------1.00------------------------------------------------------
................................................................................................................................AACTGAGGAGCTGAACGC........................................................................................................ 1820.500.50---0.50--------------------------------------------------------------
..................................................................................................................................AAACTGAGGAGCTGAAC....................................................................................................... 1730.330.33---0.33--------------------------------------------------------------
..............................................................CCAGACTGAAAAAAAAAAAA........................................................................................................................................................................ 2040.250.25-----------------------------------------------------------------0.25