ID: uc003koa.1_intron_6_0_chr5_102444419_r.5p
GENE: GIN1(1)
chr5:102455568-102455817-


(10)
B-CELL 		(10)
BREAST 		(32)
CELL-LINE 		(5)
CERVIX 		(5)
HEART 		(5)
HELA 		(6)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAATCACGAGAGGAAGCTTAAATCTGTCGTTTGAATTTAGGACCACCTCGGTGAGTGGTCGTTCTGGTGTGCTGTGTCATACCTACTGTTTTTTAAAGTGAGGCGTAACCCGACAGTAATTTCAAAACCATTCGCCTCGACCGGCCTAAGGAAGGGTTTAATTGAGTCTGTGGGGAGATTTTGCGCAAGCGCCTTTGAGATAGGAGGGCCTTGGGCGTTGCGATGTCCCGCGCTAGCTGAGCAGAAAGGG
.............................................((..((((((((((.....(((..((((((((.((.((((((.........))).))).)).))...))))))...)))..))))))))))..(((((((((......)))).....)).)))...)).............................................................................
............................................45...............................................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM532890(GSM532890)
G576T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR029126(GSM416755)
143B. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
.......................................................................................................................................................AAGGGTTTAATTGAGTCTG................................................................................19118.0018.00---12.00----6.00--------------------------------------------------------------------------------------
..............................................CTCGGTGAGTGGTCGTTCTGG.......................................................................................................................................................................................2118.008.002.001.002.00------------1.001.00------------------------------------------------------------------1.00-----------
................................................CGGTGAGTGGTCGTTCTGG.......................................................................................................................................................................................1916.006.00-3.00-----------------1.00------1.00----------------------1.00---------------------------------------------
............................................ACCTCGGTGAGTGGTCGTT...........................................................................................................................................................................................1915.005.00-4.00--------------------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................GATAGGAGGGCCTTGGGCG.................................1915.005.00----4.00----------------------------------------------------------------1.00-------------------------
...........................................................................................................................................ACCGGCCTAAGGAAGGGT.............................................................................................1815.005.003.00-1.00--------------------1.00-----------------------------------------------------------------------
.................................AATTTAGGACCACCTCGG.......................................................................................................................................................................................................1814.004.00----------4.00------------------------------------------------------------------------------------
.........................................ACCACCTCGGTGAGTGGTCGTTCT.........................................................................................................................................................................................2414.004.00------------------1.00---2.00----------------------------------------------------------------------1.00-
................................................CGGTGAGTGGTCGTTCTG........................................................................................................................................................................................1814.004.00-1.00---------------------------2.00----------------1.00------------------------------------------------
.........................................ACCACCTCGGTGAGTGGTCGTTCTGGT......................................................................................................................................................................................2714.004.00-------1.00----3.00----------------------------------------------------------------------------------
..............................TTGAATTTAGGACCACCT..........................................................................................................................................................................................................1823.003.00--0.50-2.50------------------------------------------------------------------------------------------
..............................................CTCGGTGAGTGGTCGTTCTGGTG.....................................................................................................................................................................................2313.003.00---------------------1.00------1.00--------------------------------1.00---------------------------------
...........................................................................................................................................ACCGGCCTAAGGAAGGG..............................................................................................1713.003.002.00----------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................AGGGTTTAATTGAGTCTG................................................................................1813.003.00-----------1.00-----------------------------------1.00-----------1.00-----------------------------------
.........................................ACCACCTCGGTGAGTGGTCGTT...........................................................................................................................................................................................2213.003.00------------------1.00-----------------------1.001.00---------------------------------------------------
.........................................ACCACCTCGGTGAGTGGTCGTTCTGG.......................................................................................................................................................................................2613.003.00-1.00----1.001.00---------------------------------------------------------------------------------------
......................................AGGACCACCTCGGTGAGTGG................................................................................................................................................................................................2013.003.00----2.00-----------1.00------------------------------------------------------------------------------
.................................................GGTGAGTGGTCGTTCTGGTG.....................................................................................................................................................................................2013.003.00-1.00-------1.00-1.00-----------------------------------------------------------------------------------
..............................................CTCGGTGAGTGGTCGTTCTG........................................................................................................................................................................................2013.003.00---------1.00---------------1.00--1.00------------------------------------------------------------------
........AGAGGAAGCTTAAATCTG................................................................................................................................................................................................................................1813.003.00-----2.00-----------------1.00-----------------------------------------------------------------------
......................................................................................................................................................................................................................GCGTTGCGATGTCCCGC...................1713.003.00--3.00--------------------------------------------------------------------------------------------
...............................TGAATTTAGGACCACTAG.........................................................................................................................................................................................................183.000.00--------------------------------1.00-----------------1.00-----------------1.00--------------------------
............................................................................................................................................CCGGCCTAAGGAAGGGT.............................................................................................1713.003.002.00-1.00--------------------------------------------------------------------------------------------
...............................................TCGGTGAGTGGTCGTTCTGGT......................................................................................................................................................................................2112.002.00---------------------1.00-----1.00-------------------------------------------------------------------
.........................................................GTCGTTCTGGTGTGCTGTG..............................................................................................................................................................................1912.002.00-----2.00-----------------------------------------------------------------------------------------
...............................................TCGGTGAGTGGTCGT............................................................................................................................................................................................1512.002.00------------------------------1.00-----------------------1.00----------------------------------------
...............................................TCGGTGAGTGGTCGTT...........................................................................................................................................................................................1612.002.00----------------------------------1.00----------------1.00-------------------------------------------
............................................................................................................................................................................................................AGGGCCTTGGGCGTTGCGATGT........................2212.002.00-------2.00---------------------------------------------------------------------------------------
.................................................GGTGAGTGGTCGTTCTGGTGT....................................................................................................................................................................................2112.002.00-2.00---------------------------------------------------------------------------------------------
................................................CGGTGAGTGGTCGTTCTGGTG.....................................................................................................................................................................................2112.002.00-----1.001.00----------------------------------------------------------------------------------------
.................TTAAATCTGTCGTTTGAATTTAGGA................................................................................................................................................................................................................2512.002.00-----2.00-----------------------------------------------------------------------------------------
............................................ACCTCGGTGAGTGGTCGT............................................................................................................................................................................................1812.002.00-1.00-------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................................GCGTTGCGATGTCCCG....................1612.002.00--2.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................TTGGGCGTTGCGATGTCC......................1812.002.00------------------------2.00----------------------------------------------------------------------
.........GAGGAAGCTTAAATCTGTC..............................................................................................................................................................................................................................1912.002.00--------------------2.00--------------------------------------------------------------------------
.........................................ACCACCTCGGTGAGTGGTCGTTCTG........................................................................................................................................................................................2512.002.00---------1.00--------------------------------------------------------------------------------1.00----
................................GAATTTAGGACCACCTC.........................................................................................................................................................................................................1712.002.00--1.00----------------------------------------------------------------------------------------1.00---
...................................................TGAGTGGTCGTTCTGGTG.....................................................................................................................................................................................1812.002.00-------------------1.00----------------------------------------1.00----------------------------------
.........................GTCGTTTGAATTTAGGACC..............................................................................................................................................................................................................1912.002.002.00----------------------------------------------------------------------------------------------
.................................................................................................................................ATTCGCCTCGACCGG..........................................................................................................1512.002.00----------------------------------------------------------------------------1.00--------1.00---------
..............................................CTCGGTGAGTGGTCGTTCTGGT......................................................................................................................................................................................2212.002.00-------1.00----1.00----------------------------------------------------------------------------------
.................................................GGTGAGTGGTCGTTCTGG.......................................................................................................................................................................................1812.002.00-------------1.001.00--------------------------------------------------------------------------------
...................................................................................................................................................................GAGTCTGTGGGGAGATT......................................................................1712.002.00--2.00--------------------------------------------------------------------------------------------
....................................................GAGTGGTCGTTCTGGTGTG...................................................................................................................................................................................1912.002.00------2.00----------------------------------------------------------------------------------------
.........GAGGAAGCTTAAATCTGTCGT............................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------1.00----------------------
..................................................GTGAGTGGTCGTTCTGGTG.....................................................................................................................................................................................1911.001.00-1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................AGGGTTTAATTGAGTCTGTGGG............................................................................2211.001.00-----------------------------------1.00-----------------------------------------------------------
..................................................GTGAGTGGTCGTTCTGGT......................................................................................................................................................................................1811.001.00---------1.00-------------------------------------------------------------------------------------
.................................................................................................................................ATTCGCCTCGACCGGC.........................................................................................................1611.001.00--1.00--------------------------------------------------------------------------------------------
..........................................CCACCTCGGTGAGTGGTCGTTCT.........................................................................................................................................................................................2311.001.001.00----------------------------------------------------------------------------------------------
...........................................CACCTCGGTGAGTGGTCGTTCTG........................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------------1.00--------------
.....................................................................................................................................................................................................AGATAGGAGGGCCTTGGG...................................1811.001.00-----------------------------------------------------------------1.00-----------------------------
.............................TTTGAATTTAGGACCACCTCG........................................................................................................................................................................................................2111.001.00-------------------------------1.00---------------------------------------------------------------
....................................................................................................................................................................................................GAGATAGGAGGGCCTTGGG...................................1911.001.00--------------------------------------------------------------------------------------1.00--------
................................GAATTTAGGACCACCTCGG.......................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------1.00------------
...................................................TGAGTGGTCGTTCTGGTGTGC..................................................................................................................................................................................2111.001.00------------------------------------------------------------------1.00----------------------------
......................................................GTGGTCGTTCTGGTGTGC..................................................................................................................................................................................1811.001.00-----------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................ACCGGCCTAAGGAAGGGTTT...........................................................................................2011.001.00-1.00---------------------------------------------------------------------------------------------
....................AATCTGTCGTTTGAATTTAG..................................................................................................................................................................................................................2011.001.00-----------1.00-----------------------------------------------------------------------------------
............................................ACCTCGGTGAGTGGTAGT............................................................................................................................................................................................181.000.00---------------1.00-------------------------------------------------------------------------------
.................................................................................................................................ATTCGCCTCGACCGGTG........................................................................................................1711.002.00---------------------------1.00-------------------------------------------------------------------
...............................TGAATTTAGGACCACCTCG........................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------1.00-------------
............................................ACCTCGGTGAGTGGTCGTTCTG........................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------------1.00--
.............AAGCTTAAATCTGTCGT............................................................................................................................................................................................................................1711.001.001.00----------------------------------------------------------------------------------------------
...........................................CACCTCGGTGAGTGGTCGTTCTGG.......................................................................................................................................................................................2411.001.00--------------------------------------------------------1.00--------------------------------------
................................................................................................................................................................................................................................GTCCCGCGCTAGCTGAG.........1711.001.00--------------------------------------------------------------1.00--------------------------------
........................................................................................................................................................................................................................................CTAGCTGAGCAGAAAGGG1821.001.00----1.00------------------------------------------------------------------------------------------
.............................................CCTCGGTGAGTGGTCGTTCT.........................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------1.00----------
....CACGAGAGGAAGCTTAAATCTG................................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00-------------------------------------------------
...............................................TCGGTGAGTGGTCGTTCT.........................................................................................................................................................................................1811.001.00------------------------------------------------1.00----------------------------------------------
.........................................ACCACCTCGGTGAGTGGTCGT............................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------1.00---------------------
................................................................................................................................................................................................CTTTGAGATAGGAGGGCCTTGG....................................2211.001.00-----1.00-----------------------------------------------------------------------------------------
............................................ACCTCGGTGAGTGGTCGTTCTGG.......................................................................................................................................................................................2311.001.00-------------------------------------1.00---------------------------------------------------------
..............................................CTCGGTGAGTGGTCGTTTTGT.......................................................................................................................................................................................211.000.00-1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................CGGCCTAAGGAAGGGTTTAAT........................................................................................2111.001.00-----------------------------------------------------------------------------1.00-----------------
............................GTTTGAATTTAGGACCA.............................................................................................................................................................................................................1711.001.00-------------------------------------------------------------------------------1.00---------------
..............................TTGAATTTAGGACCACCTCGG.......................................................................................................................................................................................................2111.001.00--------------1.00--------------------------------------------------------------------------------
..........................................................TCGTTCTGGTGTGCTGTGTCATACC.......................................................................................................................................................................2511.001.001.00----------------------------------------------------------------------------------------------
....CACGAGAGGAAGCTTAA.....................................................................................................................................................................................................................................1711.001.00-----------------------------------------------------1.00-----------------------------------------
..........AGGAAGCTTAAATCTGTCG.............................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00-----------------------
..............................................CTCGGTGAGTGGTCGTTCTGGTGTG...................................................................................................................................................................................2511.001.00-------1.00---------------------------------------------------------------------------------------
................................................................................................................................CATTCGCCTCGACCGGCCTAAGGAAGGG..............................................................................................2811.001.001.00----------------------------------------------------------------------------------------------
..........................TCGTTTGAATTTAGGAC...............................................................................................................................................................................................................1711.001.001.00----------------------------------------------------------------------------------------------
..........................TCGTTTGAATTTAGGACCACCTCGG.......................................................................................................................................................................................................2511.001.00---------------1.00-------------------------------------------------------------------------------
.........................................ACCACCTCGGTGAGTGGTCGTTCTTG.......................................................................................................................................................................................2611.004.00------1.00----------------------------------------------------------------------------------------
...................................................TGAGTGGTCGTTCTGGTGTGCTGTGTC............................................................................................................................................................................2711.001.00-----------------1.00-----------------------------------------------------------------------------
............................GTTTGAATTTAGGACCACCTCGGTGA....................................................................................................................................................................................................2611.001.00---------------------------------------------------------1.00-------------------------------------
..............AGCTTAAATCTGTCGTTTGA........................................................................................................................................................................................................................2011.001.00-------------1.00---------------------------------------------------------------------------------
........................................................................................................................................TCGACCGGCCTAAGGAAGGGT.............................................................................................2111.001.00--1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................ACCGGCCTAAGGAAGGGTT............................................................................................1911.001.00-------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................CGACCGGCCTAAGGAAGGGT.............................................................................................2011.001.001.00----------------------------------------------------------------------------------------------
....CACGAGAGGAAGCTTAAAT...................................................................................................................................................................................................................................1911.001.00-------------1.00---------------------------------------------------------------------------------
.............................................................................................................................AACCATTCGCCTCGACCGGCCAAGG....................................................................................................251.000.00-----------------1.00-----------------------------------------------------------------------------
.................................................................................................................................................................TTGAGTCTGTGGGGAG.........................................................................1611.001.001.00----------------------------------------------------------------------------------------------
....................................TTAGGACCACCTCGGTGT....................................................................................................................................................................................................181.000.00----------------------------------------1.00------------------------------------------------------
................................................................................................................................CATTCGCCTCGACCGGC.........................................................................................................1711.001.00----------------------------------------------------1.00------------------------------------------
............................GTTTGAATTTAGGACCACCTCGGT......................................................................................................................................................................................................2411.001.00---------1.00-------------------------------------------------------------------------------------
.....................................................AGTGGTCGTTCTGGTGTG...................................................................................................................................................................................1811.001.001.00----------------------------------------------------------------------------------------------
.....................................TAGGACCACCTCGGTGAGTG.................................................................................................................................................................................................2011.001.00-1.00---------------------------------------------------------------------------------------------
............................GTTTGAATTTAGGACCACCTCG........................................................................................................................................................................................................2211.001.00---------------------------------------------------------------1.00-------------------------------
......................................................................................................................................................................................................GATAGGAGGGCCTTGTGCG.................................191.000.00----1.00------------------------------------------------------------------------------------------
......................................................................................................................................................GAAGGGTTTAATTGAGTCTGT...............................................................................2111.001.00-1.00---------------------------------------------------------------------------------------------
........................................................................................................................................TCGACCGGCCTAAGG...................................................................................................1511.001.00----------------1.00------------------------------------------------------------------------------
................................................CGGTGAGTGGTCGTTGTGG.......................................................................................................................................................................................191.000.00-------------------------1.00---------------------------------------------------------------------
..................................................GTGAGTGGTCGTTCTGGTGTG...................................................................................................................................................................................2111.001.00------1.00----------------------------------------------------------------------------------------
.........................GTCGTTTGAATTTAGGAC...............................................................................................................................................................................................................1811.001.00--1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................GCCTAAGGAAGGGTTTAATTGA.....................................................................................2211.001.00---------------------------------------------------------------------------1.00-------------------
..ATCACGAGAGGAAGCTTG......................................................................................................................................................................................................................................181.000.00------------------------------------1.00----------------------------------------------------------
...................................................................................................................................................................................................TGAGATAGGAGGGCCTTG.....................................1811.001.00--------------------------------------------------------------------------1.00--------------------
...................................................................................................................................TCGCCTCGACCGGCCTAAG....................................................................................................1911.001.00----------1.00------------------------------------------------------------------------------------
.........................................................................................................................................CGACCGGCCTAAGGAAGGGTT............................................................................................2111.001.00---------------------------------------1.00-------------------------------------------------------
..............................................CTCGGTGAGTGGTCGTTCTGTTG.....................................................................................................................................................................................2311.003.00----------------------------------------------------------------------------------------1.00------
.......................CTGTCGTTTGAATTTAGGAC...............................................................................................................................................................................................................2011.001.00--------------1.00--------------------------------------------------------------------------------
....CACGAGAGGAAGCTTAAATCT.................................................................................................................................................................................................................................2111.001.00---------------------------------1.00-------------------------------------------------------------
..............................................CTCGGTGAGTGGTCGTTCTGGTGT....................................................................................................................................................................................2411.001.00------------------------------------------------------------------------------1.00----------------
..............................................................................................................................................................................................................GGCCTTGGGCGTTGCGATGTCC......................2211.001.00-----------------------------------------------------------------------------------------1.00-----
.......................CTGTCGTTTGAATTTAGGACC..............................................................................................................................................................................................................2111.001.00--------------------------------------------1.00--------------------------------------------------
................................................................................................................................................................................................................................GTCCCGCGCTAGCTGAGCAGAA....2211.001.00---------------------------------------------------------------------------------------1.00-------
.................................................GGTGAGTGGTCGTTC..........................................................................................................................................................................................1520.500.50--------------0.50--------------------------------------------------------------------------------
...............................TGAATTTAGGACCACCT..........................................................................................................................................................................................................1720.500.500.50----------------------------------------------------------------------------------------------
...............................TGAATTTAGGACCACC...........................................................................................................................................................................................................1630.330.330.33----------------------------------------------------------------------------------------------
..............................TTGAATTTAGGACCACC...........................................................................................................................................................................................................1730.330.33--0.33--------------------------------------------------------------------------------------------
................................GAATTTAGGACCACCT..........................................................................................................................................................................................................1640.250.25----------------------------------------------------------------------------------------------0.25
................................GAATTTAGGACCACC...........................................................................................................................................................................................................1550.200.20--0.20--------------------------------------------------------------------------------------------
............................................................GTTCTGGTGTGCTGTG..............................................................................................................................................................................1650.200.20------------------------------0.20----------------------------------------------------------------

Antisense strand
AAATCACGAGAGGAAGCTTAAATCTGTCGTTTGAATTTAGGACCACCTCGGTGAGTGGTCGTTCTGGTGTGCTGTGTCATACCTACTGTTTTTTAAAGTGAGGCGTAACCCGACAGTAATTTCAAAACCATTCGCCTCGACCGGCCTAAGGAAGGGTTTAATTGAGTCTGTGGGGAGATTTTGCGCAAGCGCCTTTGAGATAGGAGGGCCTTGGGCGTTGCGATGTCCCGCGCTAGCTGAGCAGAAAGGG
.............................................((..((((((((((.....(((..((((((((.((.((((((.........))).))).)).))...))))))...)))..))))))))))..(((((((((......)))).....)).)))...)).............................................................................
............................................45...............................................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM532890(GSM532890)
G576T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR029126(GSM416755)
143B. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
......................................................................................................TACTGTCGGGTTACGC.................................................................................................................................... 1612.002.002.00----------------------------------------------------------------------------------------------
..............................................................................................................................GCCGGTCGAGGCGAATGGT......................................................................................................... 1912.002.00-1.00-----------------------------------------------------1.00---------------------------------------
....................................................................................................................AGGCGAATGGTTTTGAAATTA................................................................................................................. 2111.001.00--------------------------1.00--------------------------------------------------------------------
...............................................................................................................................................................................................................ATCGCAACGCCCAAGGC.......................... 1711.001.00----------------------------------------------------------1.00------------------------------------
...........................................................................................TTTAAAGTGAGGCGTTTT............................................................................................................................................. 181.000.00-----------------1.00-----------------------------------------------------------------------------
..............................................................................................................................CCGGTCGAGGCGAATGGT.......................................................................................................... 1811.001.00----------------------------------------------------------------1.00------------------------------
...............................................................................................................................................................................................................GACATCGCAACGCCCAAGGC....................... 2011.001.00-------------1.00---------------------------------------------------------------------------------
..............................................................................................................................CGGTCGAGGCGAATGGT........................................................................................................... 1711.001.00--1.00--------------------------------------------------------------------------------------------
...........................................................................................................GAAATTACTGTCGGGT............................................................................................................................... 1620.500.50--------------0.50--------------------------------------------------------------------------------