ID: uc003knn.2_intron_2_0_chr5_101724530_r.5p
GENE: (11)
chr5:101726485-101726734-


(7)
B-CELL
(1)
BRAIN
(11)
BREAST
(12)
CELL-LINE
(7)
CERVIX
(2)
OTHER
(5)
SKIN

Sense strand
ACTGCGTTCTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGTATGGATTTTTGGCAATCTCTTATTACATCAAAATGTTTTTTGATATGTATATATGTCTACATGTGTATTTAGTATTACAAATAAATAATAGTAAATGACACAAAGCGAGTGAAAGGGGGAGCTGCTTTGCAGAATTTAGGAGACAATGTAAAGAGGGAATACCTAATGCAAAGCTCATTCTAATTATCAAATTATCAA
..................................................(((.((......(((..((((((.((((.((............((((((....))))))....((((((((((.(((((........))))).)))))).))))....))))))))))))..))).)).)))....................................................................
..................................................51....................................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR040009(GSM532894)
G727T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
.....................................................TGGATTTTTGGCAATAGGA..................................................................................................................................................................................1916.000.002.004.001.00-1.001.00-1.00-1.00-----1.001.00---1.001.00---1.00---------------------
.....................................................TGGATTTTTGGCAATAGG...................................................................................................................................................................................1812.000.001.007.001.00-----1.00--1.001.00----------------------------------
....................................................ATGGATTTTTGGCAATAGGA..................................................................................................................................................................................2077.140.144.000.29--0.430.140.140.14-------------------0.290.290.29-----0.14-0.140.140.14-0.140.140.14-0.14-
....................................................ATGGATTTTTGGCAATCGGA..................................................................................................................................................................................204.000.003.00----------------------1.00-----------------------
....................................................ATGGATTTTTGGCAATAGG...................................................................................................................................................................................1973.140.140.431.570.29-0.14---0.14-----------------------0.140.14----------0.14-0.14
....................................................ATGGATTTTTGGCAATCGG...................................................................................................................................................................................192.000.001.00------------1.00---------------------------------
....................................................ATGGATTTTTGGCAATAGGC..................................................................................................................................................................................2071.570.141.43---------------------------------0.14------------
....................................................ATGGATTTTTGGCAATCTGT..................................................................................................................................................................................201.000.001.00----------------------------------------------
....................................................ATGGATTTTTGGCAATCGGAC.................................................................................................................................................................................211.000.00------1.00----------------------------------------
....................................................ATGGATTTTTGGCAATCG....................................................................................................................................................................................181.000.001.00----------------------------------------------
......................................................GGATTTTTGGCAATCGGA..................................................................................................................................................................................181.000.00--------------------------1.00--------------------
.....................................................................................................................................................................AGGGGGAGCTGCTTTTTTT..................................................................191.000.00----------1.00------------------------------------
....................................................ATGGATTTTTGGCAAAGT....................................................................................................................................................................................181.000.001.00----------------------------------------------
....................................................ATGGATTTTTGGCAATCCTG..................................................................................................................................................................................201.000.001.00----------------------------------------------
....................................................ATGGATTTTTGGCAATCCGT..................................................................................................................................................................................201.000.001.00----------------------------------------------
.....................................................TGGATTTTTGGCAATAGGC..................................................................................................................................................................................191.000.00-------------------1.00---------------------------
.....................................................TGGATTTTTGGCAATTGGA..................................................................................................................................................................................191.000.00------------------------1.00----------------------
.....................................................TGGATTTTTGGCAATCGG...................................................................................................................................................................................181.000.00----------------------1.00------------------------
....................................................ATGGATTTTTGGCAATAGGT..................................................................................................................................................................................2070.710.140.71----------------------------------------------
....................................................ATGGATTTTTGGCAATGGGA..................................................................................................................................................................................2070.290.140.14----0.14-----------------------------------------
................................................TGGTATGGATTTTTGG..........................................................................................................................................................................................1640.250.25------------------------------0.25----------------
....................................................ATGGATTTTTGGCAATGTGG..................................................................................................................................................................................2070.140.140.14----------------------------------------------
....................................................ATGGATTTTTGGCAATAGTC..................................................................................................................................................................................2070.140.140.14----------------------------------------------
....................................................ATGGATTTTTGGCAAT......................................................................................................................................................................................1670.140.14------------------------------------0.14----------
....................................................ATGGATTTTTGGCAATACGC..................................................................................................................................................................................2070.140.140.14----------------------------------------------
....................................................ATGGATTTTTGGCAATAT....................................................................................................................................................................................1870.140.14----------------------------------------0.14------
....................................................ATGGATTTTTGGCAATTGT...................................................................................................................................................................................1970.140.140.14----------------------------------------------
....................................................ATGGATTTTTGGCAATAGGG..................................................................................................................................................................................2070.140.140.14----------------------------------------------
....................................................ATGGATTTTTGGCAATAGTA..................................................................................................................................................................................2070.140.140.14----------------------------------------------
....................................................ATGGATTTTTGGCAATATGA..................................................................................................................................................................................2070.140.140.14----------------------------------------------

Antisense strand
ACTGCGTTCTCTGGCCTTGGGTGTAAGCTATGTGATTTTGAGAATATTTGGTATGGATTTTTGGCAATCTCTTATTACATCAAAATGTTTTTTGATATGTATATATGTCTACATGTGTATTTAGTATTACAAATAAATAATAGTAAATGACACAAAGCGAGTGAAAGGGGGAGCTGCTTTGCAGAATTTAGGAGACAATGTAAAGAGGGAATACCTAATGCAAAGCTCATTCTAATTATCAAATTATCAA
..................................................(((.((......(((..((((((.((((.((............((((((....))))))....((((((((((.(((((........))))).)))))).))))....))))))))))))..))).)).)))....................................................................
..................................................51....................................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR040009(GSM532894)
G727T. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
...................................................................................AATGTTTTTTGATATGAAG.................................................................................................................................................... 192.000.00---2.00-------------------------------------------
..................................................................................................GTATATATGTCTACATCAG..................................................................................................................................... 191.000.00-----------------1.00-----------------------------
...............CTTGGGTGTAAGCTAATT......................................................................................................................................................................................................................... 181.000.00------------------1.00----------------------------
..........................GCTATGTGATTTTGACCA.............................................................................................................................................................................................................. 181.000.00--------------1.00--------------------------------
............................................................................................................................................................CCCCCTTTCACTCGC............................................................................... 1550.200.20-------------------------------0.20---------------