ID: uc003klb.2_intron_17_0_chr5_94850628_r.5p
GENE: (25)
chr5:94851857-94852106-


(1)
AGO2.ip
(4)
B-CELL
(1)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
HELA
(5)
OTHER
(6)
SKIN
(1)
XRN.ip

Sense strand
TTGCATGGACCAACTTGGGAGTGTTATACCTCACAAATGAAAACATTGAGGTAAATATGTTGCCTGTCTGTCATATTTAAAACAAAGAATGTTTTCTATATTATTGTCTCCTCAATAGCTCAGCTTCTTGTGGAGAAATGTTTTTGCACATCGTTATCTAGCCAGTATGCTCTCCAGTATGCTAGTTAATTGATGATATTCAATTTATGTCGAATAATTAATGTGTAAGATTTATTTTCCTTTTTATGAC
..........................................................................................................(((((.(((.(((...)))..))).))))).........(((.((.(((....)))..)).)))................................................................................
.......................................................................................................104..................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR343334SRR343336SRR343335SRR040040(GSM532925)
G612N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR343337SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
............................................................................................................TCCTCAATAGCTCAGCTGGTA.........................................................................................................................2121.000.0021.00---------------------------
............................................................................................................TCCTCAATAGCTCAGCTGG...........................................................................................................................198.000.008.00---------------------------
............................................................................................................TCCTCAATAGCTCAGCTGGT..........................................................................................................................206.000.006.00---------------------------
............................................................................................................TCCTCAATAGCTCAGTCGG...........................................................................................................................1965.501.000.17-1.001.000.83---------0.830.830.17-0.17-0.17----0.170.17-
............................................................................................................TCCTCAATAGCTCAGTTGG...........................................................................................................................1962.331.002.00-----------------0.170.17--------
............................................................................................................TCCTCAATAGCTCAGCTTGTA.........................................................................................................................212.000.002.00---------------------------
............................................................................................................TCCTCAATAGCTCAGCTGATA.........................................................................................................................211.000.001.00---------------------------
.....TGGACCAACTTGGGAGTGT..................................................................................................................................................................................................................................1911.001.00--------1.00-------------------
.............................CTCACAAATGAAAACATTGAG........................................................................................................................................................................................................2111.001.00-------1.00--------------------
...CATGGACCAACTTGGGAGTGTTAT...............................................................................................................................................................................................................................2411.001.00-1.00--------------------------
...........................................................................................................CTCCTCAATAGCTCAGTTGG...........................................................................................................................201.000.001.00---------------------------
..GCATGGACCAACTTGGGAG.....................................................................................................................................................................................................................................1911.001.00------------1.00---------------
............................................................................................................TCCTCAATAGCTCAGCTGATC.........................................................................................................................211.000.001.00---------------------------
.TGCATGGACCAACTTGGGAGTGT..................................................................................................................................................................................................................................2311.001.00---------1.00------------------
.....................TGTTATACCTCACAAATGAAAACATT...........................................................................................................................................................................................................2611.001.00----------1.00-----------------
............................................................................................................TCCTCAATAGCTCAGCTGT...........................................................................................................................191.000.001.00---------------------------
............................................................................................................TCCTCAATAGCTCAGCTGTTA.........................................................................................................................211.000.001.00---------------------------
.TGCATGGACCAACTTG.........................................................................................................................................................................................................................................1611.001.00-----------1.00----------------
......................................................................................................................................................TCGTTATCTAGCCAGTATG.................................................................................1911.001.00-1.00--------------------------
............................................................................................................TCCTCAATAGCTCAG...............................................................................................................................1561.001.00--0.33-0.17-----------0.33----0.17------
............................................................................................................TCCTCAATAGCTCAGT..............................................................................................................................1660.831.000.17--0.17------------0.330.17----------
............................................................................................................TCCTCAATAGCTCAGTC.............................................................................................................................1760.331.00-----------------------0.170.17---
............................................................................................................TCCTCAATAGCTCAGTGG............................................................................................................................1860.171.00----0.17-----------------------
............................................................................................................TCCTCAATAGCTCAGTTG............................................................................................................................1860.171.00----------------------0.17-----
............................................................................................................TCCTCAATAGCTCAGTCG............................................................................................................................1860.171.00-----------------0.17----------
............................................................................................................TCCTCAATAGCTCAGTTTG...........................................................................................................................1960.171.000.17---------------------------

Antisense strand
TTGCATGGACCAACTTGGGAGTGTTATACCTCACAAATGAAAACATTGAGGTAAATATGTTGCCTGTCTGTCATATTTAAAACAAAGAATGTTTTCTATATTATTGTCTCCTCAATAGCTCAGCTTCTTGTGGAGAAATGTTTTTGCACATCGTTATCTAGCCAGTATGCTCTCCAGTATGCTAGTTAATTGATGATATTCAATTTATGTCGAATAATTAATGTGTAAGATTTATTTTCCTTTTTATGAC
..........................................................................................................(((((.(((.(((...)))..))).))))).........(((.((.(((....)))..)).)))................................................................................
.......................................................................................................104..................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR343334SRR343336SRR343335SRR040040(GSM532925)
G612N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR343337SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.............................................TTGAGGTAAATATGTCACA.......................................................................................................................................................................................... 191.000.00------1.00---------------------
.............................................................................TAAAACAAAGAATGTTTTAT......................................................................................................................................................... 201.000.00-------------1.00--------------
........................................................................................................................CAGCTTCTTGTGGAGGTG................................................................................................................ 181.000.00-----1.00----------------------
......................................................................................................................................................................CATACTGGAGAGCAT..................................................................... 1590.110.11---------------------------0.11