ID: uc003kgk.2_intron_2_0_chr5_79410475_r.3p
GENE: (11)
chr5:79410425-79410674-


(1)
AGO1.ip
(1)
AGO2.ip
(8)
CELL-LINE
(3)
CERVIX
(1)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(2)
SKIN
(1)
TESTES

Sense strand
TTGTCAAAAAGCTTTTGTGGGTGGTGATATGGTTTGGCCCTGTGTCCCCACCCAAATCTCATCTCAAATTGTAATCCCCCCATGTTGTGGGAGGGACCTGGTGGGAGTGATTGGATCATGAAGGCGGTTTCCCCAATGCTGTTCTTGTGATGGTGAGGGAGTTCTCACAAGATCTGACCTTTTTTTTTTTTTTTTTTGAGATGGAGTCCCACTCTGTTGCCCAGGCTGGAGTACAGTGGCATGATCTTGG
..........................................................................................((((((...(((.(((........(((((((..(((((.........)))))..))))))).((((((....))))))....))).)))...))))))..............................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR040040(GSM532925)
G612N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGACT.................................................254.000.003.001.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTGGG...................................................253.000.003.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGTTAG................................................263.000.001.002.00--------------------
.....................................................................................................................................................................................................................CTGTTGCCCAGGCTGGAGTACTCTG............252.000.00--2.00-------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTGC....................................................242.000.001.001.00--------------------
...............................................................................................ACCTGGTGGGAGTGATTGGATTA....................................................................................................................................232.000.00----2.00-----------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGAGGGG...............................................272.000.002.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTGCTTG................................................282.000.002.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTGTT....................................................242.000.001.001.00--------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTTTTG......................................................242.000.001.001.00--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGCAC.........252.000.002.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTCCTC.................................................272.000.001.001.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTGGG....................................................242.000.001.001.00--------------------
..............................................................................CCCATGTTGTGGGAGACGC.........................................................................................................................................................191.000.00-------1.00--------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTTTCG......................................................241.000.001.00---------------------
........................................................................................................................................................................................................ATGGAGTCCCACTCTGTTGCCCAGGCCGGC....................301.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTATCA...................................................251.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGAAC.................................................251.000.001.00---------------------
..........................................................................................................................................................................................TTTTTTTTTTTGAGATGGAGTCCCACTATG..................................301.000.00-----1.00----------------
.....................................................................................TGTGGGAGGGACCTGGTGGGATGCA............................................................................................................................................251.000.00-1.00--------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGGTC.................................................251.000.001.00---------------------
.........................................................................................................................................................................................................TGGAGTCCCACTCTGTTGCCCAGGCTGGC....................291.000.00-1.00--------------------
...........................................................................................................................................................................ATCTGACCTTTTTTTTTTTTTTTGTG.....................................................261.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTCG....................................................241.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGAGAGC...............................................271.000.001.00---------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTCTCC.......................................................231.000.00-1.00--------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGGACG................................................261.000.00-1.00--------------------
........................................................................................................................................................................................................ATGGAGTCCCACTCTGTTGCGC............................221.000.001.00---------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTTTTTGG....................................................261.000.001.00---------------------
............................................................................................................................................................................................................AGTCCCACTCTGTTGCCCAGGCTGGAGCTC................301.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGAGGCGC..............................................281.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTCTTG.................................................271.000.001.00---------------------
.........................................................................................................................................................................AGATCTGACCTTTTTTTTTTTTTA.........................................................241.000.00-1.00--------------------
.........................................................................................................................................................................................................TGGAGTCCCACTCTGTTGCCCAGGCCGG.....................281.000.001.00---------------------
.........................................................................................................................................................................................................TGGAGTCCCACTCTGTTGCCCAGGCTGGTG...................301.000.001.00---------------------
............................................................................................................................................................................................................AGTCCCACTCTGTTGCCCAGGCCGGA....................261.000.001.00---------------------
...............................................................................................................................................................................GACCTTTTTTTTTTTTTTTTTCGG...................................................241.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTCTTC....................................................241.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGGGCC................................................261.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTCCTG.................................................271.000.001.00---------------------
.........................................................................................................................................................................................................TGGAGTCCCACTCTGTTGCCCAGGCTAG.....................281.000.001.00---------------------
........................................................................................................................................................................................................ATGGAGTCCCACTCTGTTGCCCAGGCCGG.....................291.000.00-1.00--------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGTTG.................................................251.000.00------------------1.00---
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGCCCC................................................261.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTCTG.....................................................231.000.001.00---------------------
.............................................................................................................................................................................CTGACCTTTTTTTTTTTTTTTTTCCG...................................................261.000.00---------------------1.00
..............................................................................................................................................................................................................TCCCACTCTGTTGCCCAGGCTGGAGCC.................271.000.00-1.00--------------------
.................................................................................................................................................................................................................................CTGGAGTACAGTGGCATGAAAAA..231.000.00---------1.00------------
..................................................................................................................................................GTGATGGTGAGGGAGCGGA.....................................................................................191.000.00-------------1.00--------
.........................................................................................................................................................................AGATCTGACCTTTTTTTTTTTTA..........................................................231.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTCCCC..................................................261.000.00-1.00--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGCGTG........261.000.001.00---------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTGC........................................................221.000.001.00---------------------
............................................................................................................................................................................................................AGTCCCACTCTGTTGCCCAGGCTGGAGTC.................291.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTGCCT.................................................271.000.001.00---------------------
.............................................................................................................................................................................CTGACCTTTTTTTTTTTTTTTTTTCTGC.................................................281.000.00-1.00--------------------
............................................................................................................................................................................................................AGTCCCACTCTGTTGCCCAGGCGGAG....................261.000.001.00---------------------
.............TTTGTGGGTGGTGATC.............................................................................................................................................................................................................................161.000.00-----------1.00----------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGTTCC................................................261.000.001.00---------------------
..................................................................................TGTTGTGGGAGGGACCTGGTGATC................................................................................................................................................241.000.00-1.00--------------------
...........................TATGGTTTGGCCCTGTGTCTCTG........................................................................................................................................................................................................231.000.00--1.00-------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGGGGT................................................261.000.00-1.00--------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTTGC.......................................................231.000.001.00---------------------
.............................................................................................................................................................................CTGACCTTTTTTTTTTTTTTTCCCC....................................................251.000.001.00---------------------
.........................................................................................................................................................................................................................TGCCCAGGCTGGAGTACAGGCG...........221.000.001.00---------------------
.................................................................................................................GATCATGAAGGCGGTTAT.......................................................................................................................181.000.00-------------------1.00--
.........................................................................................................................................................................AGATCTGACCTTTTTTTTTTTTTTTG.......................................................261.000.001.00---------------------
..................................................................................TGTTGTGGGAGGGACCTGGTGGAGAG..............................................................................................................................................261.000.00-1.00--------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGGGGC................................................261.000.001.00---------------------
...........................................................................................................................................................................ATCTGACCTTTTTTTTTTTTGAG........................................................231.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTGC.....................................................231.000.001.00---------------------
.............................................................................................................................................................................CTGACCTTTTTTTTTTTTTTTTTTCTCT.................................................281.000.00--------------------1.00-
.........................................................................................................................................................................................................TGGAGTCCCACTCTGTTGCCCAGGCTGC.....................281.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTCCG.....................................................231.000.001.00---------------------
..............................................................................................................................................................................................................TCCCACTCTGTTGCCCAGGCCGG.....................231.000.001.00---------------------
............................................................................................................................................................................................................AGTCCCACTCTGTTGCCCAGGCCGG.....................251.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGCAC.................................................251.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTGCT...................................................251.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGGTTT................................................261.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTCGC..................................................261.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTGGC..................................................261.000.001.00---------------------
......................................................................................................................................................................................................................TGTTGCCCAGGCTGGAGTACAGTGCGTG........281.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTGCC...................................................251.000.001.00---------------------
................................................................................CATGTTGTGGGAGGGACCTCTG....................................................................................................................................................221.000.00-----------------1.00----
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGCTC.................................................251.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTGGGAG................................................281.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTCTCC.................................................271.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTCTGC....................................................241.000.001.00---------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGCGT.........251.000.001.00---------------------
.............................................................................................................................................................................CTGACCTTTTTTTTTTTTTTTTTTGCTTG................................................291.000.001.00---------------------
........................................................................................................................................................................................................ATGGAGTCCCACTCTGTTGCCCAGGCTGCAG...................311.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTCG.....................................................231.000.001.00---------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTTTTTTTGCGCC................................................261.000.001.00---------------------
.............................................................................................................................................................................CTGACCTTTTTTTTTTTTTTTTTGC....................................................251.000.00-1.00--------------------
..............................................................................................................................................................................................................TCCCACTCTGTTGCCCAGGCTGGAGCGCC...............291.000.001.00---------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTCTGG.................................................271.000.001.00---------------------
.....................................................................................................................................................ATGGTGAGGGAGTTCTCACAAGACCTG..........................................................................271.000.001.00---------------------
...........................................................................................................................................................................ATCTGACCTTTTTTTTTTTTTTCTTT.....................................................261.000.001.00---------------------
...........................................................................................................................................................................ATCTGACCTTTTTTTTTTTATAT........................................................231.000.00-----1.00----------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTCTTC......................................................241.000.00---------------1.00------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTTTGCTGC................................................281.000.00-1.00--------------------
..............................................................................................................................................................................TGACCTTTTTTTTTTTTTTTTCTGG...................................................251.000.001.00---------------------
.........................................................................................................................................................................AGATCTGACCTTTTTTTTTTTTTTTTG......................................................271.000.001.00---------------------
....................................................................................................................................................................................................................TCTGTTGCCCAGGCTGGAGTACTCTG............261.000.00--------1.00-------------
...........................................................................................................................................................................ATCTGACCTTTTTTTTTTTTTTTTTTG....................................................2720.500.50-0.50--------------------
............................................................................................................................................................................................................AGTCCCACTCTGTTGCCCAGGCTGGAGTAC................3090.110.110.11---------------------

Antisense strand
TTGTCAAAAAGCTTTTGTGGGTGGTGATATGGTTTGGCCCTGTGTCCCCACCCAAATCTCATCTCAAATTGTAATCCCCCCATGTTGTGGGAGGGACCTGGTGGGAGTGATTGGATCATGAAGGCGGTTTCCCCAATGCTGTTCTTGTGATGGTGAGGGAGTTCTCACAAGATCTGACCTTTTTTTTTTTTTTTTTTGAGATGGAGTCCCACTCTGTTGCCCAGGCTGGAGTACAGTGGCATGATCTTGG
..........................................................................................((((((...(((.(((........(((((((..(((((.........)))))..))))))).((((((....))))))....))).)))...))))))..............................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR040040(GSM532925)
G612N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................................................................................GGCTGGAGTACAGTGGCATGAGAGC.. 253.000.001.002.00--------------------
..........................................TGTCCCCACCCAAATCTCAGAG.......................................................................................................................................................................................... 222.000.00---2.00------------------
...............................................................................................................................................................................................................................GGCTGGAGTACAGTGGCAGAGC..... 222.000.00-2.00--------------------
......................................CCTGTGTCCCCACCCAAATCTCATCT.......................................................................................................................................................................................... 261.000.00-1.00--------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTTTTTTGAGGTC............................................... 311.000.00--------------1.00-------
......................................................................................................................................................................................................AGATGGAGTCCCACTCTGTCAT.............................. 221.000.00----------1.00-----------
...............................................................................................................................................................................................................................GGCTGGAGTACAGTGGCATGATGACG. 261.000.00-1.00--------------------
............................................................................................................................................................................TCTGACCTTTTTTTTTTTTTTTTTAGG................................................... 271.000.00----------------1.00-----
.....................................................................................................................................................................................................................................CAAGATCATGCCACTGTACT. 2001.001.00------1.00---------------
............................................................................................................................................GTTCTTGTGATGGTGTCTG........................................................................................... 191.000.00------------1.00---------
..................................................................................TGTTGTGGGAGGGACCTGGTGGGAGGCA............................................................................................................................................ 281.000.00--1.00-------------------