ID: uc003kff.1_intron_11_0_chr5_76785398_r.3p
GENE: WDR41(1)
chr5:76785348-76785597-


(2)
B-CELL 		(3)
BRAIN 		(12)
CELL-LINE 		(3)
HEART 		(1)
HELA 		(2)
LIVER 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTGTTTTATGTGGAACTGGCAGTTATTTAGTTGATAAAAGAAGAAATAATATTTAGTAGTAGAACATGATACCTTAAGGCTTTTAAAATCTTGTGTTCTCAGATGTATACCATGGAGTTATATTCCAATATGGTCTTACAAATCATTTTATCTCTTTTTTTGTCTTTTGTTTTTTGCTTTTTTTTTTTTTTCAATACAAGAAATCTCCTTTACAGACAATAGGTGAAGAACAAACCCAGAATCCCTACAC
.........................................................................................((((((((......((((.((((((((((...))))))...))))..))))............................((.....))...............))))))))..................................................
..........................................................................75...........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATACCAG..................................................2418.000.00--7.0010.001.00-----------------------
.....................................................................................................................................TCTTACAAATCATTTTATCTCTTTTG...........................................................................................264.000.00--1.002.001.00-----------------------
..........................................................................................................................................................................................................ATCTCCTTTACAGACAATAGGTGAAGA.....................2713.003.00-------3.00--------------------
.....................................................................................................................................TCTTACAAATCATTTTATCTCTTTTTG..........................................................................................273.000.00--2.00--1.00----------------------
..GTTTTATGTGGAACTCTG......................................................................................................................................................................................................................................183.000.00------------1.001.00---1.00----------
..................................................................................................................................................................TCTTTTGTTTTTTGCTTTTTTTCCT...............................................................253.000.00-3.00--------------------------
........................................................................................................................................................TCTTTTTTTGTCTTTTGTTTTGTAG.........................................................................253.000.00-3.00--------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATATAAA..................................................243.000.00---2.001.00-----------------------
.....................................................................................................................................TCTTACAAATCATTTTATCTCTTTTTTG.........................................................................................283.000.00--2.00--1.00----------------------
.....................................................................................................................................TCTTACAAATCATTTTATCTCTTTTTTTG........................................................................................2913.003.00--1.00-1.001.00----------------------
....................................................................................................................................................................TTTTGTTTTTTGCTTTTTTTTAC...............................................................232.000.00-2.00--------------------------
.........................................................................................................................................................................................................................AATAGGTGAAGAACAAACCCAGAATCC......2712.002.00----------2.00-----------------
.........................................................AGTAGAACATGATACCTTAAGGCTTTTA.....................................................................................................................................................................2812.002.00-----------2.00----------------
......................................................................................................................................CTTACAAATCATTTTATCTCTTTTTTTG........................................................................................2812.002.00----1.001.00----------------------
..............................................................................................................................................................................................................................GTGAAGAACAAACCCAGAA.........1912.002.00-------------------1.00-----1.00--
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTGGGG..........................................................................222.000.00-2.00--------------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTCAGT.............................................................202.000.00-1.00----1.00---------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTTTTTGC.......................................................................251.000.001.00---------------------------
.............................................................................................................................................................................TTGCTTTTTTTTTTTTTTCGGTG......................................................231.000.001.00---------------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTTCTGG........................................................................241.000.001.00---------------------------
.............................................................................................................................................................................TTGCTTTTTTTTTTTTTTCAAGG......................................................231.000.001.00---------------------------
...............................................................................CTTTTAAAATCTTGTGTTCTCAG....................................................................................................................................................2311.001.00------1.00---------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTCTAT.............................................................201.000.00------1.00---------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTTCAGT............................................................231.000.001.00---------------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTTTTTCC.......................................................................251.000.00-1.00--------------------------
.....................................................................................................................................................................TTTGTTTTTTGCTTTTTTTTTAATC............................................................251.000.001.00---------------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTTTTTTTGGTA.......................................................261.000.00-1.00--------------------------
................................................................................................................................................................TGTCTTTTGTTTTTTGCTTTTTTTGAC...............................................................271.000.001.00---------------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTTTTTCCC..........................................................231.000.001.00---------------------------
..........................................................................................................................................................................TTTTTGCTTTTTTTTTTTTTGTTC........................................................241.000.00-1.00--------------------------
...............................................................................................................................................................TTGTCTTTTGTTTTTTGCTTTTTTTCCTC..............................................................291.000.001.00---------------------------
..........................................................................................................................................................................TTTTTGCTTTTTTTTTTTTGCCC.........................................................231.000.001.00---------------------------
............................................................................................................................................................................TTTGCTTTTTTTTTTTTTTCGGAG......................................................241.000.00-1.00--------------------------
...........................................................................................................................................................................TTTTGCTTTTTTTTTTTTTTCCTTC......................................................251.000.001.00---------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTCAATACCAA..................................................221.000.00---1.00------------------------
................................................ATATTTAGTAGTAGAACATGATAC..................................................................................................................................................................................2411.001.00--------------------------1.00-
...TTTTATGTGGAACTGGCAGT...................................................................................................................................................................................................................................2011.001.00--------------------1.00-------
...............................................................................................................................................................TTGTCTTTTGTTTTTTGCTTTTTTTCCC...............................................................281.000.001.00---------------------------
.....................................................................................................................................TCTTACAAATCATTTTATCTCTTTG............................................................................................251.000.00-----1.00----------------------
.............................................................................................................................................................TTTTGTCTTTTGTTTTCCA..........................................................................191.000.001.00---------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATAAATG..................................................241.000.00--1.00-------------------------
......................................................................................................................................................................TTGTTTTTTGCTTTTTTTTTTGGG............................................................241.000.001.00---------------------------
.....................................................................................................................................................ATCTCTTTTTTTGTCTTTTGTTTCTTG..........................................................................271.000.00-1.00--------------------------
..................................................................................................................................................................TCTTTTGTTTTTTGCGGCT.....................................................................191.000.001.00---------------------------
..............................................................................................................................................................................TGCTTTTTTTTTTTTTTCAAGG......................................................221.000.00-1.00--------------------------
.....................................................................................................................................................................TTTGTTTTTTGCTTTTTTTTTAGG.............................................................241.000.00-1.00--------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATACCAT..................................................241.000.00--1.00-------------------------
..................................................ATTTAGTAGTAGAACATGATACC.................................................................................................................................................................................2311.001.00----------------------1.00-----
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATACAAAG.................................................251.000.00-----1.00----------------------
....................................................................................................................................................................TTTTGTTTTTTGCTTTTTTTTTTTAGAC..........................................................281.000.001.00---------------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTTTGCT............................................................231.000.00-1.00--------------------------
.....................................................................................................................................................................TTTGTTTTTTGCTTTTTTTTTTTCTTC..........................................................271.000.001.00---------------------------
...........................................................................................................................................................................TTTTGCTTTTTTTTTTTTTTCAAATAG....................................................271.000.00------1.00---------------------
........................................................................................................................................................TCTTTTTTTGTCTTTTGTTTTTAAA.........................................................................251.000.00----1.00-----------------------
...............................................................................................................................................CATTTTATCTCTTTTTCATT.......................................................................................201.000.00----1.00-----------------------
....................................................................................................................................................................TTTTGTTTTTTGCTTTTTTTTTAC..............................................................241.000.001.00---------------------------
..............................................................................................................................................................................TGCTTTTTTTTTTTTTTCATCAG.....................................................231.000.001.00---------------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTCCGG.............................................................221.000.001.00---------------------------
....................................................................................................................................................................TTTTGTTTTTTGCTTTTTTTTTTTCCT...........................................................271.000.001.00---------------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTTTTGGTA..........................................................251.000.00-1.00--------------------------
.........................................................................................................................................................................................................................AATAGGTGAAGAACAAACC..............1911.001.00---------------------------1.00
...........................................................................................................................................................................TTTTGCTTTTTTTTTTTTTTCATTTC.....................................................261.000.00-1.00--------------------------
..........................................................................................................................................................................TTTTTGCTTTTTTTTTTTTTTCATTTG.....................................................271.000.001.00---------------------------
...................................................................................................................................................................................................................ACAGACAATAGGTGAAGAACAAACCCTT...........281.000.00------------------1.00---------
........................................................................................................................................................................................................................CAATAGGTGAAGAACAAACCCAGAATCCC.....2911.001.00------------------------1.00---
.........................................................................................................................................................CTTTTTTTGTCTTTTGTTTTTCTG.........................................................................241.000.001.00---------------------------
..................................................................................................................................................................TCTTTTGTTTTTTGCGGG......................................................................181.000.00---------------------1.00------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTTTTTTGGAA........................................................251.000.001.00---------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTCAATATATG..................................................231.000.00----1.00-----------------------
........................................................................................................................................................................GTTTTTTGCTTTTTTTTTGGC.............................................................211.000.001.00---------------------------
.TGTTTTATGTGGAACTCTG......................................................................................................................................................................................................................................191.000.00-----------------------1.00----
..........................................................................................................................................................................TTTTTGCTTTTTTTTTTTTTTCGCC.......................................................251.000.001.00---------------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTTTTGGTC..........................................................251.000.001.00---------------------------
.....................................................................................................................................TCTTACAAATCATTTTATCTCTTTTTCTG........................................................................................291.000.00----1.00-----------------------
.........................................................AGTAGAACATGATACCTTAAGGCT.........................................................................................................................................................................2411.001.00---------1.00------------------
....................................................................................................................................................................TTTTGTTTTTTGCTTTTTTTGGC...............................................................231.000.001.00---------------------------
..........................................................................................................................................................................TTTTTGCTTTTTTTTTTTTTTCAGACC.....................................................271.000.001.00---------------------------
....................................................................................................................................................................TTTTGTTTTTTGCTTTTTTAGAG...............................................................231.000.00-1.00--------------------------
.....................................................................................................................................................ATCTCTTTTTTTGTCTTTTGTTTTTTC..........................................................................271.000.001.00---------------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTCAGG.............................................................201.000.001.00---------------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTTTTTTTCAATAC.....................................................2811.001.00------1.00---------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATACCAGG.................................................251.000.00---1.00------------------------
..........................................................................................................................................................................TTTTTGCTTTTTTTTTTTTTGCGG........................................................241.000.001.00---------------------------
.............................................................................................................................................................................TTGCTTTTTTTTTTTTTTCACTGC.....................................................241.000.00-1.00--------------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTTAGT.............................................................221.000.00-1.00--------------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTGAGG.........................................................................231.000.00-1.00--------------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTTTGCC........................................................................241.000.00-1.00--------------------------
......................................................................................................................................................................TTGTTTTTTGCTTTTTTTTTTTTTGGC.........................................................271.000.001.00---------------------------
......................................................................................................................................................................TTGTTTTTTGCTTTTTTGGTG...............................................................211.000.001.00---------------------------
.........................................................................................................................................................................TTTTTTGCTTTTTTTTTTATTG...........................................................221.000.00----1.00-----------------------
.............................................................................................................................................................................TTGCTTTTTTTTTTTTTTCATG.......................................................221.000.001.00---------------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTGGTC.........................................................................231.000.001.00---------------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTCTCC.........................................................................231.000.00-1.00--------------------------
........................................................................................................................................................TCTTTTTTTGTCTTTTGTTTTTTCC.........................................................................251.000.00-1.00--------------------------
........................................................................................................................................................TCTTTTTTTGTCTTTTGTTTTCTGC.........................................................................251.000.001.00---------------------------
...............................................................................................................................................................TTGTCTTTTGTTTTTTGCCG.......................................................................201.000.00--1.00-------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTCAATACCA...................................................231.000.00--1.00-------------------------
.............................................................................................................................................................................TTGCTTTTTTTTTTTTTTCGCC.......................................................221.000.00-1.00--------------------------
.......................................................................................................................................................................TGTTTTTTGCTTTTTTTTTTTTTTCAGAG......................................................291.000.001.00---------------------------
............................................................................................................................................................TTTTTGTCTTTTGTTTTTTGC.........................................................................2120.500.50-0.50--------------------------

Antisense strand
GTGTTTTATGTGGAACTGGCAGTTATTTAGTTGATAAAAGAAGAAATAATATTTAGTAGTAGAACATGATACCTTAAGGCTTTTAAAATCTTGTGTTCTCAGATGTATACCATGGAGTTATATTCCAATATGGTCTTACAAATCATTTTATCTCTTTTTTTGTCTTTTGTTTTTTGCTTTTTTTTTTTTTTCAATACAAGAAATCTCCTTTACAGACAATAGGTGAAGAACAAACCCAGAATCCCTACAC
.........................................................................................((((((((......((((.((((((((((...))))))...))))..))))............................((.....))...............))))))))..................................................
..........................................................................75...........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................................................................................................TTTATCTCTTTTTTTGGGCA.................................................................................... 203.000.00--------3.00-------------------
..........................................................................................................................................................TTTTTTTGTCTTTTGTTTTTTT.......................................................................... 221.000.00----------------1.00-----------
...............................................................................................................................................................................................CAATACAAGAAATCTGTAT........................................ 191.000.00---------------1.00------------
.................................................................................................................................................................................TTTTTTTTTTTTTTCAATTTT.................................................... 211.000.00--------------1.00-------------
............................................................................................................................................AGACAAAAAAAGAGATAAAATGATT..................................................................................... 2511.001.00---------1.00------------------