ID: uc003kbp.1_intron_37_0_chr5_70858348_f.3p
GENE: BDP1(38)
chr5:70860381-70860630+


(1)
BREAST
(7)
CELL-LINE
(1)
OTHER
(5)
SKIN

Sense strand
TAGGATTATTTACTTAATGTAACAGCATAGAAGTGAAATTTTTGGGTCAGTGATTGTGAACATATTTAAAGCTCAATATTTATTGCCACGTTGCTTTTCAAACAGATCATATTGGTTTAGACTGCTATATATACACACACATATATATATAAATGTTGTATTACAGTTTTATTTTTACTTTATTTTTATTACCTTTTTAGGTTTCTTGTGATCAGCCCTTACTGAAAGAAGGATATAAAAGTGCCCAAAA
..................................................................((((((((((((((((..((((...((.(((......))).))...)))).........((((((((........)))))))))))))))))......)))))))...............................................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR343336SRR189785SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................TTTACTTTATTTTTATTACCTTTTTAG..................................................2718.008.00----3.00-3.002.00-----------
.......................................................................................................................................................................................................................CCCTTACTGAAAGAAGGATATAAAAGTGCC.....3016.006.00-6.00-----------------
......................................................................................................................................................................TTTTATTTTTACTTTATTTTTATTACCTTTTTAG..................................................3415.005.004.00----1.00-------------
......................................................................................................................................................................TTTTATTTTTACTTTATTTTTATTACCTTTTTA...................................................3314.004.001.00-2.00-1.00--------------
.................................................................................................................................................................................CTTTATTTTTATTACCTTTTTAG..................................................2312.002.00--1.00---------1.00------
..........................................................................................................................................................................ATTTTTACTTTATTTTTATTACCTTTTTAG..................................................3012.002.001.00-1.00----------------
.......................................................................................................................................................................TTTATTTTTACTTTATTTTTATTACCTTTTTAG..................................................3312.002.001.00-1.00----------------
......................................................................................................................................................................TTTTATTTTTACTTTATTTTTATTACCTTTAG....................................................322.000.002.00------------------
..............................................TCAGTGATTGTGAACTCTG.........................................................................................................................................................................................191.000.00------------------1.00
........................................................................................................................................................................TTATTTTTACTTTATTTTTATTTTTG........................................................261.000.00-----1.00-------------
..............................................................................................................................................................TATTACAGTTTTATTTTTACTTTATTTTCATT............................................................321.000.00--------------1.00----
.......................................................................CTCAATATTTATTGCCACGTTG.............................................................................................................................................................2211.001.00---1.00---------------
.......................................................................................................................................................................TTTATTTTTACTTTATTTTTATTACCTTTTCAG..................................................331.000.001.00------------------
......................................................................................................................................................................TTTTATTTTTACTTTATTTTTATTACCTTTTAG...................................................331.000.001.00------------------
..............................................................................................................ATTGGTTTAGACTGCTATATATACACAC................................................................................................................2811.001.00----------1.00--------
................................................................................................................................ATATACACACACATATATTCG.....................................................................................................211.000.00---1.00---------------
.........................................................................................................................................................................TATTTTTACTTTATTTTTATTACCTTTTTAG..................................................3111.001.00----1.00--------------
..........................................................................................................................................................................ATTTTTACTTTATTTTTATTACCTTTTCAG..................................................301.000.00-----1.00-------------
...........................................................................................................................................CATATATATATAAATGTACG...........................................................................................201.000.00---1.00---------------
............................................................................................................................CTATATATACACACACATCTAT........................................................................................................221.000.00---------1.00---------
....................................................................AAGCTCAATATTTATTGCCACGTTGCT...........................................................................................................................................................2711.001.00---------------1.00---
...................TAACAGCATAGAAGTG.......................................................................................................................................................................................................................1611.001.00-------------1.00-----
..................................................................................................................................ATACACACACATATATATATAAATATAC............................................................................................281.000.00---1.00---------------
..................................................TGATTGTGAACATATCGTT.....................................................................................................................................................................................191.000.00---1.00---------------
.........................................................................................................................................................................TATTTTTACTTTATTTTTAA.............................................................201.000.00-----------1.00-------
............................................................................................................................................................................TTTTACTTTATTTTTACTTA..........................................................201.000.00-----1.00-------------
........................................................................................................................................................................TTATTTTTACTTTATTTTTATTTATT........................................................261.000.00-----1.00-------------
....................................................................................................................................ACACACACATATATATCCCG..................................................................................................201.000.00--------1.00----------
...................................AAATTTTTGGGTCAGTGATTGTG................................................................................................................................................................................................2311.001.00-----------------1.00-
......................................................................................................................................................................TTTTATTTTTACTTTATTTTTATTACCTTTTCAG..................................................341.000.001.00------------------
...........................................................................................................................................................................TTTTTACTTTATTTTTACTCA..........................................................211.000.00--------1.00----------
.......................................................................................................................................................................TTTATTTTTACTTTATTTTTATTACCTTTTTAT..................................................331.000.00--1.00----------------
......................................................................................................................................................................TTTTATTTTTACTTTATTTTTATTACCTTTATA...................................................331.000.00----------------1.00--
..............................................................................................................................................................TATTACAGTTTTATTTTTACTTTAC...................................................................251.000.00----1.00--------------
..................................................................................................................................ATACACACACATATATATCTTC..................................................................................................221.000.00---1.00---------------
..................................................................................................................................................................................TTTATTTTTATTACCTTTTTAG..................................................2211.001.00--1.00----------------
......................................................................................................................................................................TTTTATTTTTACTTTATTTCTTC.............................................................231.000.001.00------------------
.......................................................................................................................................................................................................................CCCTTACTGAAAGAAGGATATAAAAGCGCC.....301.000.00-1.00-----------------

Antisense strand
TAGGATTATTTACTTAATGTAACAGCATAGAAGTGAAATTTTTGGGTCAGTGATTGTGAACATATTTAAAGCTCAATATTTATTGCCACGTTGCTTTTCAAACAGATCATATTGGTTTAGACTGCTATATATACACACACATATATATATAAATGTTGTATTACAGTTTTATTTTTACTTTATTTTTATTACCTTTTTAGGTTTCTTGTGATCAGCCCTTACTGAAAGAAGGATATAAAAGTGCCCAAAA
..................................................................((((((((((((((((..((((...((.(((......))).))...)))).........((((((((........)))))))))))))))))......)))))))...............................................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR343336SRR189785SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)