ID: uc003jvf.1_intron_1_0_chr5_68265747_r
GENE: AK128486(2)
chr5:68265697-68265989-


(2)
BREAST
(11)
CELL-LINE
(1)
HEART
(2)
OTHER
(3)
SKIN

Sense strand
GGCTTTTCCCAAAGGATTCTGTGAGGCTGAAGTGTTACCAGGTGATTAAGGTTGGTTCTTTTTCTCTGGGTTTGTAGAATTGAAATCGCTGAGGTTGGTGAGATATGGGGTTATTGGTTACTTACCAATGAAGTCATGTATATGGCTGGATTGTGTGGAAAGGGGATGAAATAGGAGGAAAAGCTGTTGTAAAAATGACTCGAGGTTTTTCTTTCTAATTTTTTTTTTCTTTTTTTGAGACAGGGTCTCACCCTGTCACCCAGGCTAGAGTGCAGTGACACAATGATAGCTTA
...............................................................................................................................................................................(((((((((((((((....)))))....))))))))))..............((((.....)))).....................................................
...............................................................................................................................................................................176................................................................243................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
....................................................................................................................................................................................AAGCTGTTGTAAAAATTCA..............................................................................................193.000.00-------2.00-1.00----------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTTTTTTAT.....................................................263.000.00--1.00---1.00----------1.00--
.......................................................................................................................................................................................................................TAATTTTTTTTTTCTTTTTTTCTAG.....................................................252.000.00---2.00----------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGTCGG..................................................262.000.00-2.00------------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTTTTCTTG.....................................................262.000.00--2.00-----------------
.................................................................................................................................................................................................................................................AGGGTCTCACCCTGTCACCCAGGCCTGG........................282.000.002.00-------------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTTTTTCAG.....................................................262.000.00--1.00---1.00-------------
................................................................................................................................TGAAGTCATGTATATATTG..................................................................................................................................................191.000.00-------------1.00------
................................................................................................................................................................................................................................TTTTCTTTTTTTGAGACAGGGTCTGGCC.........................................281.000.00-1.00------------------
..........................................................................................................................................................................................................................TTTTTTTTTTCTTTTTTTGAGCCG...................................................241.000.00-1.00------------------
................................................................................................................................................................................................................................TTTTCTTTTTTTGAGACAGGGGG..............................................231.000.001.00-------------------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGAAT.....................................................241.000.00-1.00------------------
..........................................................................................................................................................................................................................TTTTTTTTTTCTTTTTTTGAGACAGGACC..............................................291.000.00-1.00------------------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTCAAG.....................................................241.000.00--1.00-----------------
...................................................................................................................................................................................................................TTTCTAATTTTTTTTTTCTTTTTTTTG.......................................................271.000.00---1.00----------------
.....................................................................................................................................................................................................................TCTAATTTTTTTTTTCTTTTTCTTG.......................................................251.000.001.00-------------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTAATG........................................................231.000.00----1.00---------------
.......................................................................................................................................................................................................................TAATTTTTTTTTTCTTTTTTCACG......................................................241.000.00----1.00---------------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGGCC.....................................................241.000.001.00-------------------
................................................................................................................................................................................................................................TTTTCTTTTTTTGAGACAGGGTCAG............................................251.000.00-1.00------------------
.........................................................................................................................................................................................................................................................ACCCTGTCACCCAGGCTAGAGGCAG...................251.000.001.00-------------------
..................................................................................................................................................................................................................CTTTCTAATTTTTTTTTATAG..............................................................211.000.00------1.00-------------
..............................................................................................................................................................................................................................TTTTTTCTTTTTTTGAGACAGGCGAG.............................................261.000.00-1.00------------------
.........................................................................................................................................................................................................................................................ACCCTGTCACCCAGGCTAGAGTGCAGCGG...............291.000.001.00-------------------
...................................................................................................................................................................................................................TTTCTAATTTTTTTTTTCACC.............................................................211.000.00----1.00---------------
...........................................................................................................................................................................................................................TTTTTTTTTCTTTTTTTGAGCCGG..................................................241.000.001.00-------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGGGAG..................................................261.000.00-1.00------------------
...................................................................................................................................................................................................TGACTCGAGGTTTTTTTGT...............................................................................191.000.001.00-------------------
.........................................................................................................................................................................................................................................TTTGAGACAGGGTCTCACCCGATC....................................241.000.00-1.00------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGAAGG..................................................261.000.001.00-------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGGCGG..................................................261.000.001.00-------------------
.......................................................................................................................................................................................................................TAATTTTTTTTTTCTTTTTTTGAGAGGGA.................................................291.000.001.00-------------------
...............................................................................................................................................................................................................................................ACAGGGTCTCACCCTGTCACCCAGGCCGC.........................291.000.001.00-------------------
.......................................................................................................................................................................................................................TAATTTTTTTTTTCTTTTTTTGAGC.....................................................251.000.00-1.00------------------
....................................................................................................................................................................................................................TTCTAATTTTTTTTTTCTTTTTCTG........................................................251.000.00--1.00-----------------
....................................................................................................................................................................................................................TTCTAATTTTTTTTTTCTCGGC...........................................................221.000.001.00-------------------
...............................................................................................................................................................................................................................TTTTTCTTTTTTTGAGACAGGGGTG.............................................251.000.00-1.00------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGGG....................................................241.000.00-1.00------------------
....................................................................................................................................................................................................................................................................CAGGCTAGAGTGCAGTGACACAATCAG......271.000.00----1.00---------------
...............................................................................................................................................................................................................................................................TCACCCAGGCTAGAGTGCAGTGCGAG............261.000.001.00-------------------
...............................................................CTCTGGGTTTGTAGAATTCTG.................................................................................................................................................................................................................211.000.00--------------1.00-----
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGAGGCTC..................................................271.000.00-1.00------------------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGAGTTGG..................................................271.000.00-1.00------------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTCCTG........................................................231.000.00---1.00----------------
........................................................................................................................................................................................................................................................CACCCTGTCACCCAGGCCCCA........................211.000.00------------1.00-------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTCAG.........................................................221.000.00--1.00-----------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGACGGGA................................................281.000.001.00-------------------
................................................................................................................................................................................................................................................................CACCCAGGCTAGAGTGCAGAAA...............221.000.00------------------1.00-
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTAAC............................................................191.000.00----1.00---------------
............................................................................................................................................................................................................................TTTTTTTTCTTTTTTTGAGACCGGC................................................251.000.001.00-------------------
.......................................................................................................................................................................................................................TAATTTTTTTTTTCTTTTTTCGGG......................................................241.000.001.00-------------------
...............................................................................................................................................................................................................................................................TCACCCAGGCTAGAGTGCAGTGACGCGG..........281.000.001.00-------------------
.....................................................................................................................................................................................................................TCTAATTTTTTTTTTCTTTTTTTAG.......................................................251.000.00---1.00----------------
..................CTGTGAGGCTGAAGTTCAT................................................................................................................................................................................................................................................................191.000.00-----------1.00--------
.......................................................................................................................................................................................................................TAATTTTTTTTTTCTTTTTTTGAGACAGGTG...............................................311.000.001.00-------------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTAAAG........................................................231.000.00---1.00----------------
...................................................................................................................................................................................................................TTTCTAATTTTTTTTTTGTCG.............................................................211.000.001.00-------------------
............................................................................................................................................................................................................................TTTTTTTTCTTTTTTTGAGACAGGGCCCC............................................291.000.00-1.00------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGTCGT....................................................241.000.00-1.00------------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTTTTCAG......................................................251.000.00--1.00-----------------
............................................................................................................................CCAATGAAGTCATGTGTAG......................................................................................................................................................191.000.00----------1.00---------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGGTG.....................................................241.000.00-1.00------------------
...................................................................................................................................................................................................................TTTCTAATTTTTTTTTTATAG.............................................................211.000.00---1.00----------------
...................................................................................................................................................................................................................TTTCTAATTTTTTTTTTGCTG.............................................................211.000.001.00-------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGTACT..................................................261.000.001.00-------------------
............................................................................................................................................................................................................................TTTTTTTTCTTTTTTTGAGACAGGGTCGCG...........................................301.000.00--1.00-----------------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGCATG....................................................251.000.00-1.00------------------
........................................................................................................................................................................................................................AATTTTTTTTTTCTTTTTTTGACGG....................................................251.000.001.00-------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGACGG....................................................241.000.00-1.00------------------
...................................................................................................................................................................................................................TTTCTAATTTTTTTTTTCTTTTTAAG........................................................261.000.00--1.00-----------------
.................................................................................................................................................................................GAAAAGCTGTTGTAAAAAA.................................................................................................191.000.00----------------1.00---
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGGTTG....................................................241.000.00-1.00------------------
.......................................................................................................................................................................................................................................................................GCTAGAGTGCAGTGACAC............1801.001.00--------1.00-----------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGAGTTGG..................................................261.000.001.00-------------------
.........................................................................................................................................................................................................................ATTTTTTTTTTCTTTTTTTGGAAC....................................................241.000.00-1.00------------------
.................................................................CTGGGTTTGTAGAATTCTG.................................................................................................................................................................................................................191.000.00---------------1.00----
.................................................................................................................................................................................................................TCTTTCTAATTTTTTTTGG.................................................................191.000.00---1.00----------------
......................................................................................................................................................................................................................CTAATTTTTTTTTTCTTTTACAG........................................................231.000.00---1.00----------------
..........................................................................................................................................................................................................................TTTTTTTTTTCTTTTTTTGAGCAGG..................................................251.000.001.00-------------------
..........................................................................................................................................................................................................................................................CCCTGTCACCCAGGCTAGAGTGCAGCGAC..............291.000.00-1.00------------------
.............................................................................................................................................................................................................TTTTTCTTTCTAATTTTTTTTTTCTTTTTTCG........................................................321.000.00---1.00----------------
.....................................................................................................................................................................................................................................................TCTCACCCTGTCACCCAGGCTCGAG.......................251.000.00-1.00------------------
...............................................................................................................................................................................................................................TTTTTCTTTTTTTGAGACAGGGCCC.............................................251.000.001.00-------------------
.......................................................................................................................................................................................................................................................TCACCCTGTCACCCAGGCTAGAGCGC....................261.000.001.00-------------------
..............................................................................................................................................TGGCTGGATTGTGTGGA......................................................................................................................................1720.500.50-------------------0.50
............AGGATTCTGTGAGGCT.........................................................................................................................................................................................................................................................................1640.250.25----------0.25---------
...............................................................................................................................................................................................................................................ACAGGGTCTCACCCTGTCACCCAGGCTAG.........................2960.170.17-0.17------------------
...............................................................................................................................................................................................................................................ACAGGGTCTCACCCTGTCACCCAGGCTA..........................2890.110.11-0.11------------------

Antisense strand
GGCTTTTCCCAAAGGATTCTGTGAGGCTGAAGTGTTACCAGGTGATTAAGGTTGGTTCTTTTTCTCTGGGTTTGTAGAATTGAAATCGCTGAGGTTGGTGAGATATGGGGTTATTGGTTACTTACCAATGAAGTCATGTATATGGCTGGATTGTGTGGAAAGGGGATGAAATAGGAGGAAAAGCTGTTGTAAAAATGACTCGAGGTTTTTCTTTCTAATTTTTTTTTTCTTTTTTTGAGACAGGGTCTCACCCTGTCACCCAGGCTAGAGTGCAGTGACACAATGATAGCTTA
...............................................................................................................................................................................(((((((((((((((....)))))....))))))))))..............((((.....)))).....................................................
...............................................................................................................................................................................176................................................................243................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
......................................................................................................................................................................................................................................................................TGTCACTGCACTCTAGCC............. 1803.003.00-----3.00--------------
......................................................................................................................................................................................................................................................................GGCTAGAGTGCAGTGACACAATGGG...... 252.000.00-2.00------------------
................................................................................................................................................................................................................................................................CACCCAGGCTAGAGTGCAGTGACAGC........... 261.000.00-1.00------------------
.......................................................................................................................................................................................................................................................................TCACTGCACTCTAGC............... 1501.001.00--------1.00-----------
..........................................................................................................................................................................................................AGGTTTTTCTTTCTAATGCT....................................................................... 201.000.00---------1.00----------
......................................................................................................................................................................................................................................................................GGCTAGAGTGCAGTGACACAGGGC....... 241.000.001.00-------------------