ID: uc003jun.2_intron_6_0_chr5_65460726_f.3p
GENE: (7)
chr5:65465679-65465928+


(2)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(2)
HELA 		(5)
LIVER 		(1)
OTHER 		(13)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ATTCTTTGTTTCTGTCTCTGTTCTAGACAATGAAATATCCGGTAAAGTTTCCAGTAAATGTATTTCAGATTATGTAACTAAAGTATTATTTAAGAGAAATTTTTAAAATATTGTTAAATACTGTTAGGATAGATTTTAAATTTTCTTGTTTGAAAGATCGTAAATTAAGTTTTGATATTCTAACAATTTTTTTTCTTTAGGAGTAGATCCCATAATAGATCACGTTCAAGACAGAAAGACAGACGTAGAT
...............................................................................................................................(((...((((((((......)))))))).)))...........................................................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTAG..................................................25123.0023.0013.00-3.00------------2.00-1.001.00-----1.00-----------1.00--1.00-------------
..............................................................................................................................................................................ATATTCTAACAATTTTTTTTCTTTAG..................................................26112.0012.004.00-7.00----------------------------------------1.00---------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTAGA.................................................26111.0023.007.00----2.00-----------1.00--1.00--------------------------------
...................................................................................................................................................................................................................................AAGACAGAAAGACAGACGTA...2017.007.00-3.00-------2.00-1.001.00----------------------------------------
....................................................................................................................................................................................................................................AGACAGAAAGACAGACGTAGAATC2415.001.00---5.00-------------------------------------------------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTATA.................................................2614.002.00----4.00------------------------------------------------
....................................................................................................................................................................................................................................AGACAGAAAGACAGACGTA...1914.004.00-1.00-------1.00-1.001.00----------------------------------------
................................................................................................................................................................................ATTCTAACAATTTTTTTTCTTTAGAA................................................2613.001.00--------3.00--------------------------------------------
..............................................................................................................................................................................ATATTCTAACAATTTTTTTTCTTTAGAA................................................2813.0012.00----------3.00------------------------------------------
........................................................................................................................................................................................................................................AGAAAGACAGACGTAGATATA213.000.00-3.00---------------------------------------------------
......................................................................................................................................................................................................................................ACAGAAAGACAGACGTAG..1813.003.003.00----------------------------------------------------
................................................................................................................................................................................................................................TTCAAGACAGAAAGACAGACGTAGA.2513.003.003.00----------------------------------------------------
....................................................................................................................................................................................................................................AGACAGAAAGACAGACGTAGAT2212.002.00-------1.00-----------------------1.00---------------------
.......................................................................................................................................................GAAAGATCGTAAATTAAGTT...............................................................................2012.002.00----------------2.00------------------------------------
................................AAATATCCGGTAAAGCGAA.......................................................................................................................................................................................................192.000.00-2.00---------------------------------------------------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTAGAA................................................2712.0023.00-----1.00-----------------------------1.00-----------------
....................................................................................................................................................................................................................................AGACAGAAAGACAGACGTAG..2012.002.00-2.00---------------------------------------------------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTA...................................................2412.002.001.00---------------------------------------1.00------------
................................................................................................................................................................................ATTCTAACAATTTTTTTTCTTTAG..................................................2411.001.001.00----------------------------------------------------
...................................................................................................................................................................................................................................AAGACAGAAAGACAGACGTAGATCTAC271.000.00-----------------------------1.00-----------------------
..................................................................................................................................................TGTTTGAAAGATCGTAAAT.....................................................................................1911.001.00---------------------------------------------1.00-------
.............................................................................................................................................................................GATATTCTAACAATTTTTTTTCTTTAG..................................................2711.001.00----------------------------------------------1.00------
..................................................................................................................................................................................................................CATAATAGATCACGTTCAAGACA.................2311.001.00----------------------------------1.00------------------
....................................................................................................................................................................................................................................AGACAGAAAGACAGACGTAGA.2111.001.00-----------------------------------------------1.00-----
..............................................................................................................................................................................................................................CGTTCAAGACAGAAAGACAGACGTAGA.2711.001.00----------------------------1.00------------------------
...........................................................................................................................................................................................................................TCACGTTCAAGACAGAAAGACAGACGTAGA.3011.001.00-------------------------------------1.00---------------
....................................................................................................................................................................................................................TAATAGATCACGTTCAAGACAGA...............2311.001.00--------------------------------------------1.00--------
................................AAATATCCGGTAAAGC..........................................................................................................................................................................................................161.000.00----------------------1.00------------------------------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTAT..................................................2511.002.00--------------------1.00--------------------------------
.......................................................................................................................................................................................................................TAGATCACGTTCAAGACAGAACG............231.000.00------------------1.00----------------------------------
...................................................................................................................................GATTTTAAATTTTCTTGTTTGAAA...............................................................................................2411.001.00---------------------------------1.00-------------------
..................................................................................................................................................................................TCTAACAATTTTTTTTCTTTAGA.................................................231.000.001.00----------------------------------------------------
................................................................................................................................................................................................................CCCATAATAGATCACGT.........................1711.001.00---------------------1.00-------------------------------
.............................................................................................................................................................................................TTTTTCTTTAGGAGTAG............................................1711.001.00-------------------1.00---------------------------------
............................................................................................................................................................................................................AGATCCCATAATAGATCACGTTCAAGACA.................2911.001.00--------------------------------1.00--------------------
........................................................................................................................................................................................................................................AGAAAGACAGACGTAGATA191.000.00-----------1.00-----------------------------------------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTTAGGAGTAG............................................3111.001.00--------------------------1.00--------------------------
...............................................................................................................................................................................TATTCTAACAATTTTTTTTCTTT....................................................2311.001.001.00----------------------------------------------------
.......................................................................................................................................................................................................................TAGATCACGTTCAAGACAGAAAGAC..........2511.001.00------------------------------------------1.00----------
.........................................................................................................................................................................................................................................GAAAGACAGACGTAGA.1611.001.00-------1.00---------------------------------------------
..............................................................................................................................................................................................................................CGTTCAAGACAGAAAGACAGACGTAG..2611.001.00-----------------------------------------1.00-----------
...CTTTGTTTCTGTCTCTGTT....................................................................................................................................................................................................................................1911.001.00-------1.00---------------------------------------------
.TTCTTTGTTTCTGTCTCT.......................................................................................................................................................................................................................................1890.560.56---------------------0.11---------------------------0.110.110.110.11
.................................................................................................................................................................................................................................TCAAGACAGAAAGACAGAC......1920.500.50------------0.50----------------------------------------
................................................................................................................................................................................................TTCTTTAGGAGTAGA...........................................1560.170.17------------------------------------------------0.17----

Antisense strand
ATTCTTTGTTTCTGTCTCTGTTCTAGACAATGAAATATCCGGTAAAGTTTCCAGTAAATGTATTTCAGATTATGTAACTAAAGTATTATTTAAGAGAAATTTTTAAAATATTGTTAAATACTGTTAGGATAGATTTTAAATTTTCTTGTTTGAAAGATCGTAAATTAAGTTTTGATATTCTAACAATTTTTTTTCTTTAGGAGTAGATCCCATAATAGATCACGTTCAAGACAGAAAGACAGACGTAGAT
...............................................................................................................................(((...((((((((......)))))))).)))...........................................................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................................................................ATATTCTAACAATTTTTGC......................................................... 196.000.00------2.00------2.002.00--------------------------------------
..............................................................................................................................................................................ATATTCTAACAATTTTGC.......................................................... 181.000.00--------------------------------------1.00--------------
.........................................................................................................................................................................................................................................ATCTACGTCTGTCTTTC 1711.001.00---------------------------1.00-------------------------
..........................................................................................TAAGAGAAATTTTTAGG............................................................................................................................................... 171.000.00-------------------1.00---------------------------------
..........................................................................TAACTAAAGTATTATAAT.............................................................................................................................................................. 181.000.00------------------------------1.00----------------------
...........................................................................................AAGAGAAATTTTTAAGTT............................................................................................................................................. 181.000.00-------------------------1.00---------------------------
..............................................................................................................................GAAAATTTAAAATCTATCC......................................................................................................... 1911.001.00-----------------------1.00-----------------------------
..............................................................................................................................................................................ATATTCTAACAATTTTATG......................................................... 191.000.00------1.00----------------------------------------------