ID: uc003jun.2_intron_4_0_chr5_65458421_f.5p
GENE: (5)
chr5:65458371-65458620+


(1)
AGO1.ip 		(1)
B-CELL 		(2)
BRAIN 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
CCAAGGGCCCTTGCTTTTAATGGAGTTATGTTTGGAGACAGGCCACTGAAGTAAGAAATCCTAAACAAAGAAATTTTAATGATTTTGAAACATTTAAAGTATTTTTGATGTAATGAAGGCTTTTTTTTTCTTTTTAATAGTAATTGGCAATTTGTGGAAAGGAAGACTTTGTGTTAAGTATAAATGAAATACATGAGATACTTACCATTTTAGTCTTTAAATTCCTTTATTTAGAGACATTTATTTTCTC
..........................................................................................................................(((((((((....(((.((.....)).)))...)))))))))......................................................................................
...............................................................................................................112.................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................TGGAGACAGGCCACTGAA........................................................................................................................................................................................................1818.008.00----2.00----2.00---1.00----1.00--1.00-----1.00--
....................................................................................................................AGGCTTTTTTTTTCTTTTTTGG................................................................................................................226.000.003.003.00----------------------------
........................GTTATGTTTGGAGACAGGC...............................................................................................................................................................................................................1916.006.00---5.00----------------1.00---------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTTC................................................................................................................225.000.00-5.00----------------------------
...............................................................................................................................................TTGGCAATTTGTGGAAA..........................................................................................1715.005.00--5.00---------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTTTG...............................................................................................................233.000.003.00-----------------------------
....................................................................................................................................TTTAATAGTAATTGGCAATTTGTGGAAAGGAAGACTTTGTGTTAAGTATAAATGAAATACATGAGATACTTACCATTTTAGTC...................................8313.003.00-----3.00------------------------
....................................................................................................................AGGCTTTTTTTTTCTTGGC...................................................................................................................193.000.003.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTCTC...............................................................................................................233.000.002.001.00----------------------------
..................................................................................................................................................................................................................................TTATTTAGAGACATTTTCT.....192.000.00-2.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTGC.................................................................................................................212.000.002.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTGGTT................................................................................................................222.000.00-2.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTTTC...............................................................................................................232.000.002.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTCG................................................................................................................222.000.002.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTGGC................................................................................................................222.000.002.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTGGG.................................................................................................................212.000.002.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTCGAG...............................................................................................................232.000.002.00-----------------------------
.................................................................................................................TGAAGGCTTTTTTTTTCTTTTCTTT................................................................................................................251.000.00-1.00----------------------------
........................GTTATGTTTGGAGACAGGCCACTGA.........................................................................................................................................................................................................2511.001.00-----------------1.00------------
................................................................................................................ATGAAGGCTTTTTTTTTCTTTTCAAT................................................................................................................261.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTAACC.................................................................................................................211.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTGAG...............................................................................................................231.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTCCGC...............................................................................................................231.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTAGGC...............................................................................................................231.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTGGAG..................................................................................................................201.000.001.00-----------------------------
..............................TTTGGAGACAGGCCACTGAAA.......................................................................................................................................................................................................2111.001.00---------------1.00--------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTCCT...............................................................................................................231.000.001.00-----------------------------
.......................................................................................................................CTTTTTTTTTCTTTTTAATAG..............................................................................................................2121.001.00----------0.50------------------0.50
........................................................................................................................................................TGTGGAAAGGAAGACTTTGCGT............................................................................221.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTATTA..................................................................................................................201.000.001.00-----------------------------
.........................TTATGTTTGGAGACAGGCCACTG..........................................................................................................................................................................................................2311.001.00-------------------------1.00----
...................................................................................................................AAGGCTTTTTTTTTCTTTTTTCTG...............................................................................................................241.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTGTCT................................................................................................................221.000.00-1.00----------------------------
.................................................................................................................TGAAGGCTTTTTTTTTCTTTTAGGA................................................................................................................251.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTGGTG...............................................................................................................231.000.001.00-----------------------------
...................................................................................................................AAGGCTTTTTTTTTCTTTAACT.................................................................................................................221.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTCC................................................................................................................221.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTAATG...............................................................................................................231.000.001.00-----------------------------
...................................................................................................................AAGGCTTTTTTTTTCTTGCAG..................................................................................................................211.000.00-1.00----------------------------
................................................................................................................ATGAAGGCTTTTTTTTTAGG......................................................................................................................201.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTATCTC..............................................................................................................241.000.00-1.00----------------------------
....................................................................................................................................TTTAATAGTAATTGGCAATTTGTGGA............................................................................................2611.001.00------------1.00-----------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTCCG...............................................................................................................231.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTGGTA..................................................................................................................201.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTAACAG..............................................................................................................241.000.001.00-----------------------------
......................GAGTTATGTTTGGAGACAGGCCACT...........................................................................................................................................................................................................2511.001.00-------1.00----------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTTAC...............................................................................................................231.000.001.00-----------------------------
.........................................................................................................TGATGTAATGAAGGCTTTTTTTTT.........................................................................................................................2411.001.00----1.00-------------------------
........................GTTATGTTTGGAGACAGGCCACTGAAAATA....................................................................................................................................................................................................301.000.00-------1.00----------------------
....................................................................................................................AGGCTTTTTTTTTCTGGAG...................................................................................................................191.000.001.00-----------------------------
.........................................................................................................................................................................................................................TAAATTCCTTTATTTCCTC..............191.000.00----------------------------1.00-
....................................................................................................................AGGCTTTTTTTTTCTTTTTGGCA...............................................................................................................231.000.001.00-----------------------------
..........................................................................................................................................................TGGAAAGGAAGACTTTGTGATA..........................................................................221.000.00------------------------1.00-----
....................................................................................................................AGGCTTTTTTTTTCTTTTTCTGG...............................................................................................................231.000.001.00-----------------------------
..............................TTTGGAGACAGGCCACTGAA........................................................................................................................................................................................................2011.001.00----------------------1.00-------
..................................................................................................................GAAGGCTTTTTTTTTCTTTA....................................................................................................................201.000.001.00-----------------------------
...................................................................................................................AAGGCTTTTTTTTTCTTTGAGG.................................................................................................................221.000.001.00-----------------------------
...............TTTAATGGAGTTATGTTTGGAGACA..................................................................................................................................................................................................................2511.001.00--------------1.00---------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTATTTC..............................................................................................................241.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTGGAG................................................................................................................221.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTCGAG..................................................................................................................201.000.001.00-----------------------------
.............................GTTTGGAGACAGGCCACTGA.........................................................................................................................................................................................................2011.001.00----------------1.00-------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTCAG................................................................................................................221.000.001.00-----------------------------
.....................................................................................................................................................ATTTGTGGAAAGGAAGACTTTGTGTTAAG........................................................................2911.001.00-1.00----------------------------
....................................................................................................................................................AATTTGTGGAAAGGAAGACTTT................................................................................2211.001.00-------------------1.00----------
....................................................................................................................AGGCTTTTTTTTTCTTTTTATTTT..............................................................................................................241.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTATTT...............................................................................................................231.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTGC..................................................................................................................201.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTCTC...................................................................................................................191.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTTCT...............................................................................................................231.000.001.00-----------------------------
...................................................................................................................AAGGCTTTTTTTTTCGG......................................................................................................................171.000.001.00-----------------------------
...................................................................................................TATTTTTGATGTAATCTG.....................................................................................................................................181.000.00-----------------------1.00------
.......................................................................................................................................AATAGTAATTGGCAATTTGTGGAAA..........................................................................................2511.001.00--------1.00---------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTACT...............................................................................................................231.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTGGTT...............................................................................................................231.000.00-1.00----------------------------
......................................................................................................................................................................................................TACTTACCATTTTAGTCTTT................................2011.001.00--------------------------1.00---
...........................................................................................................ATGTAATGAAGGCTTTTTTTTTCTTTTT...................................................................................................................2811.001.001.00-----------------------------
............................TGTTTGGAGACAGGCTG.............................................................................................................................................................................................................171.000.00-1.00----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTCTTG...............................................................................................................231.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTAACAGT.............................................................................................................251.000.001.00-----------------------------
.....................................................................................................................GGCTTTTTTTTTCTTTTTGGG................................................................................................................211.000.001.00-----------------------------
.........................................................................................................................................................GTGGAAAGGAAGACTTTGTGTTAAGTATA....................................................................2911.001.00-----------1.00------------------
...................................................................................................................AAGGCTTTTTTTTTCTTTGAG..................................................................................................................211.000.001.00-----------------------------
....................................................................................................................AGGCTTTTTTTTTCTTTTTTTGA...............................................................................................................231.000.00-1.00----------------------------
..........................................................................................................................................AGTAATTGGCAATTTGTGGAAAGGAAGAC...................................................................................2911.001.00--------1.00---------------------

Antisense strand
CCAAGGGCCCTTGCTTTTAATGGAGTTATGTTTGGAGACAGGCCACTGAAGTAAGAAATCCTAAACAAAGAAATTTTAATGATTTTGAAACATTTAAAGTATTTTTGATGTAATGAAGGCTTTTTTTTTCTTTTTAATAGTAATTGGCAATTTGTGGAAAGGAAGACTTTGTGTTAAGTATAAATGAAATACATGAGATACTTACCATTTTAGTCTTTAAATTCCTTTATTTAGAGACATTTATTTTCTC
..........................................................................................................................(((((((((....(((.((.....)).)))...)))))))))......................................................................................
...............................................................................................................112.................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................TTAATGGAGTTATGTTCTTG...................................................................................................................................................................................................................... 202.000.00------2.00-----------------------
...............................................................................................AAAGTATTTTTGATGCAT......................................................................................................................................... 181.000.00----------1.00-------------------