ID: uc003jun.2_intron_1_0_chr5_65449425_f.5p
GENE: (2)
chr5:65449375-65449624+


(3)
B-CELL 		(7)
BRAIN 		(9)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(4)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
UTERUS

Sense strand
TAACACGGTTTTTATTGACAGAGCTCTGATAGTTGTTCCTTGTGCAGAAGGTTGGTATCTCGCTTTTTTTCCTCTTATTTGAATTTCTGTCCTGTCTGTTATTGCCTTTAGCTTTCCTAGAGATTGGCAAGTAGACAGTACTCTTGGTGTGTGTGTGAAAGTAAGAATGAAATTTGGAGGAGGTAAACCTTTTTACCTAATAGTAATATTAAAATGGTTAATTTATGACATGTACATTTGAGGTTTTACA
........................................................................................((.(((((((...(((((.....(((.....)))...))))).))))))).)).............................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029129(GSM416758)
SW480. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................AGAGATTGGCAAGTAGACAGTACTC...........................................................................................................25125.0025.0010.003.005.005.00-1.00-------------------1.00-----------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTA..............................................................................................................22118.0018.006.007.004.00----------------------------1.00-----------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTACT............................................................................................................24116.0016.004.004.001.00--1.00---2.00---1.001.00-------1.00------------------1.00-------
......................................................................................................................AGAGATTGGCAAGTAGACAGTAC.............................................................................................................2317.007.002.005.00-----------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTACTCT..........................................................................................................2614.004.002.001.001.00----------------------------------------------
.....................................................................................................................TAGAGATTGGCAAGTAGACAGT...............................................................................................................2214.004.003.00---------------1.00--------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAATA..............................................................................................................223.000.002.001.00-----------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGT...............................................................................................................2113.003.00-1.00--------------1.00------1.00-------------------------
..ACACGGTTTTTATTGACAG.....................................................................................................................................................................................................................................1912.002.00-2.00-----------------------------------------------
...............................................................................................................................................................AGTAAGAATGAAATTTGGAGGAGGTA.................................................................2612.002.00----------2.00--------------------------------------
.AACACGGTTTTTATTGACAGA....................................................................................................................................................................................................................................2112.002.00-2.00-----------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTACTCTTGGTGTGTGTGTGAAAGTAAGAATGAAATTTGGAGGAGGTAAACCTTTTTACCTAATAGTAATATTAAAATGGTT...............................10112.002.00-----------------2.00-------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTAATCT..........................................................................................................2612.0018.002.00------------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTAGT............................................................................................................2412.0018.001.001.00-----------------------------------------------
.....................................................................................................................TAGAGATTGGCAAGTAGACAGTAC.............................................................................................................2412.002.001.001.00-----------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGAC..................................................................................................................1812.002.00--1.00-------------------------------------1.00--------
......................................................................................................................AGAGATTGGCAAGTAGA...................................................................................................................1712.002.00------2.00------------------------------------------
........................................................................................................................AGATTGGCAAGTAGACAGTACTCT..........................................................................................................2411.001.00----------------------------------1.00--------------
................GACAGAGCTCTGATAGT.........................................................................................................................................................................................................................1711.001.00------------------------------------------1.00------
.....................................................................................................................TAGAGATTGGCAAGTAGACAGTA..............................................................................................................2311.001.00-1.00-----------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTACTCTT.........................................................................................................2711.001.001.00------------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTAAT............................................................................................................2411.0018.00-1.00-----------------------------------------------
....ACGGTTTTTATTGACAGAGCTCTGAT............................................................................................................................................................................................................................2611.001.00--------------------------------1.00----------------
..................................................................................................................TCCTAGAGATTGGCAAGTAGAC..................................................................................................................2211.001.00------------1.00------------------------------------
.............................................................................................................................GGCAAGTAGACAGTACTCT..........................................................................................................1911.001.00--------------------------------------1.00----------
.........................................................................................................................GATTGGCAAGTAGACAGTACTCT..........................................................................................................2311.001.00---------------------------------------1.00---------
...............................GTTGTTCCTTGTGCAG...........................................................................................................................................................................................................1611.001.00-----------1.00-------------------------------------
........................TCTGATAGTTGTTCCTTGTGCAGAAG........................................................................................................................................................................................................2611.001.00-------------------1.00-----------------------------
........................................................................................................................AGATTGGCAAGTAGACAGTACTCTTGGTGTGTG.................................................................................................3311.001.00-----------1.00-------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTAATC...........................................................................................................2511.0018.00-1.00-----------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACCGTA..............................................................................................................2211.002.00--1.00----------------------------------------------
................GACAGAGCTCTGATAGTTGTTCC...................................................................................................................................................................................................................2311.001.00------------------1.00------------------------------
.......................................................................................................................GAGATTGGCAAGTAGACAGTA..............................................................................................................2111.001.001.00------------------------------------------------
...................................................................................................................................................................AGAATGAAATTTGGAGGAGGTAAACCT............................................................2711.001.00-1.00-----------------------------------------------
........................................................ATCTCGCTTTTTTTCCCGGT..............................................................................................................................................................................201.000.00----------------------------1.00--------------------
...........................................................................................................................................................TGAAAGTAAGAATGAAATTTGGAGGAGGT..................................................................2911.001.001.00------------------------------------------------
......................................................................................................................AGAGATTGGCAAGTAGACAGTACTG...........................................................................................................2511.0016.00-1.00-----------------------------------------------
...............................GTTGTTCCTTGTGCAGAAG........................................................................................................................................................................................................1911.001.00-------------------------------------1.00-----------
.AACACGGTTTTTATTGACAGAG...................................................................................................................................................................................................................................2211.001.00-1.00-----------------------------------------------
............................ATAGTTGTTCCTTGTGCAGAAG........................................................................................................................................................................................................2211.001.00------------------------1.00------------------------
.................ACAGAGCTCTGATAGTTGTTCCTTGTGCAG...........................................................................................................................................................................................................3011.001.00--------------------1.00----------------------------
...............................................................TTTTTTTCCTCTTATAAG.........................................................................................................................................................................181.000.00---------------1.00---------------------------------
...........................................................................................................................TTGGCAAGTAGACAGTCAAA...........................................................................................................201.000.00--------------1.00----------------------------------
.................ACAGAGCTCTGATAGTTGTTCCTTGTGCAGAAG........................................................................................................................................................................................................3311.001.00--------------------------------------------1.00----
.AACACGGTTTTTATTGACAGAGCTCTGATAGTTGTTCCTTGTGCAGAAG........................................................................................................................................................................................................4911.001.00-----------------------------------1.00-------------
.......................................................................................................................................................TGTGTGAAAGTAAGAATGAAAT.............................................................................2211.001.00---------------------1.00---------------------------
................................................AGGTTGGTATCTCGCTTT........................................................................................................................................................................................1811.001.00--------------------------1.00----------------------
...........................................................................................................................................................................ATTTGGAGGAGGTAAACTCTG..........................................................211.000.00------------1.00------------------------------------
...............................................................................................................CTTTCCTAGAGATTGGCAAGTAGACAGTA..............................................................................................................2911.001.00-------------1.00-----------------------------------
.................................TGTTCCTTGTGCAGAAGGTTGGTA.................................................................................................................................................................................................2411.001.00---------------------------1.00---------------------
........................................................ATCTCGCTTTTTTTCCTCT...............................................................................................................................................................................1920.500.50---------------------------------------------0.50---
.........................CTGATAGTTGTTCCTTGT...............................................................................................................................................................................................................1820.500.50----------------------------------------------0.50--
.............................................................................TTTGAATTTCTGTCCTGT...........................................................................................................................................................1830.330.33-----------------------------------------------0.33-
........................................TGTGCAGAAGGTTGG...................................................................................................................................................................................................1550.200.20------------------0.20------------------------------
...................AGAGCTCTGATAGTT........................................................................................................................................................................................................................1570.140.14------------------------------------------------0.14

Antisense strand
TAACACGGTTTTTATTGACAGAGCTCTGATAGTTGTTCCTTGTGCAGAAGGTTGGTATCTCGCTTTTTTTCCTCTTATTTGAATTTCTGTCCTGTCTGTTATTGCCTTTAGCTTTCCTAGAGATTGGCAAGTAGACAGTACTCTTGGTGTGTGTGTGAAAGTAAGAATGAAATTTGGAGGAGGTAAACCTTTTTACCTAATAGTAATATTAAAATGGTTAATTTATGACATGTACATTTGAGGTTTTACA
........................................................................................((.(((((((...(((((.....(((.....)))...))))).))))))).)).............................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029129(GSM416758)
SW480. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................................................................TGTGTGTGAAAGTAAGA.................................................................................... 173.000.00-------2.00-----------------------------------1.00-----
.......................................TTGTGCAGAAGGTTGGTCT................................................................................................................................................................................................ 192.000.00----2.00--------------------------------------------
.........................................................................CTTATTTGAATTTCTCGCG.............................................................................................................................................................. 192.000.00--------2.00----------------------------------------
.........................................................................CTTATTTGAATTTCTCG................................................................................................................................................................ 171.000.00---------------------------------1.00---------------
................................................................................................................................................................GTAAGAATGAAATTTGAATT...................................................................... 201.000.00------------------------------1.00------------------
.....................................................................................................................................................TCTTACTTTCACACACA.................................................................................... 1711.001.00---------------1.00---------------------------------
.........................................................................CTTATTTGAATTTCTCGC............................................................................................................................................................... 181.000.00-----------------------------1.00-------------------
.....................................................................................TCTGTCCTGTCTGTTCAG................................................................................................................................................... 181.000.00------------------------------------1.00------------