ID: uc003jun.2_intron_1_0_chr5_65449425_f.3p
GENE: (2)
chr5:65454847-65455096+


(1)
AGO3.ip 		(1)
BRAIN 		(1)
BREAST 		(10)
CELL-LINE 		(3)
HEART 		(1)
HELA 		(1)
LIVER 		(3)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
AAGTTTTGCTCACTTTTATTTTTCCTAGTAGAGCAGGATAAAAGGAAAGACTTAAGTTCTTATTTATTTCTTTATACAGATCTGATAGATAGATTCATTTATTATTATTATTTTTTAACTGCAAGGGTAATTGTAAAATCATAGTGTAAAGTTTGTGTGGTGTTTCTGCTTTTTGTAATGTTTGGAACTTGCCTCTGCAGGTAAAATCCCAGAGGAATCCAAAGCCCTCTCTTTATTGGCTCCTGCTCCA
...................................................................................................................................((((....(((((........))))).((((((((.((..........))..)))))..)))..))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
............................................................................................ATTCATTTATTATTATTATTTTTTAACTG.................................................................................................................................29192.0092.0038.0031.0010.0011.00-1.00---------1.00------------------
......................................................................................................................................................................................TGGAACTTGCCTCTGCAGA.................................................1915.001.00----5.00-----------------------------
.............................................................................................TTCATTTATTATTATTATTTTTTAACTG.................................................................................................................................2815.005.001.004.00--------------------------------
............................................................................................ATTCATTTATTATTATTATTTTTTAACCG.................................................................................................................................2914.001.00--3.001.00------------------------------
...................................................................................................................................TGTAAAATCATAGTGTAA.....................................................................................................1823.003.00----------1.00-0.50----1.00--------0.50-------
............................................................................................ATTCATTTATTATTATTATTTTTTAACTT.................................................................................................................................2912.002.002.00---------------------------------
............................................................................................ATTCATTTATTATTATTATTTTTTAACT..................................................................................................................................2812.002.001.00--1.00------------------------------
................................................................................................................................AATTGTAAAATCATAGTGTAA.....................................................................................................2122.002.00---------------------------0.50-0.50-0.500.50-
...........................................................................................................................................................................TTTGTAATGTTTGGAACTTGCCTCT......................................................2512.002.00--------2.00-------------------------
..............................................................................................TCATTTATTATTATTATTTTTTAACTG.................................................................................................................................2712.002.001.001.00--------------------------------
..................................................................................................................................TTGTAAAATCATAGTGTAA.....................................................................................................1921.501.50------------0.50---------------0.50-0.50---
............................................................................................ATTCATTTATTATTATTATTTTTTTTAG..................................................................................................................................281.000.00--1.00-------------------------------
.....................................................................................................TTATTATTATTTTTTAACTGCAAG.............................................................................................................................2411.001.00-------------1.00--------------------
................................................................................................................................................................................AATGTTTGGAACTTGCCTCTGCAGG.................................................2511.001.00---------------------1.00------------
........................................................................................................................................................................................................................ATCCAAAGCCCTCTCTTCATT.............211.000.00-------1.00--------------------------
.........................TAGTAGAGCAGGATAAAAGGAA...........................................................................................................................................................................................................2211.001.00-------------------1.00--------------
...............................................................................................................................TAATTGTAAAATCATAGTGTAAAGT..................................................................................................2511.001.00------------------------1.00---------
..........................................................................................................................................................................TTTTGTAATGTTTGGAACTTGCCTCTGCAG..................................................3011.001.00---------1.00------------------------
............................................................................................................................GGGTAATTGTAAAATCATAGTGTAA.....................................................................................................2511.001.00--------------------1.00-------------
......................................................................................................................................................................................................................GAATCCAAAGCCCTCTCTTTATCG............241.000.00-------1.00--------------------------
..............................................................................................TCATTTATTATTATTATTTTTTAG....................................................................................................................................241.000.00--1.00-------------------------------
......................................................................................................................................................................................TGGAACTTGCCTCTGCAG..................................................1811.001.00-----------1.00----------------------
.................................CAGGATAAAAGGAAAGACTTAAGT.................................................................................................................................................................................................2411.001.00-----1.00----------------------------
............................................................................................ATTCATTTATTATTATTATTTTTG......................................................................................................................................241.000.00--1.00-------------------------------
......................................................................................................................................................................................TGGAACTTGCCTCTGCTCT.................................................191.000.00----1.00-----------------------------
...........................................................................................................................................................................................................................CAAAGCCCTCTCTTTTTG.............181.000.00--------------1.00-------------------
.............................................................................................................................................................................................................ATCCCAGAGGAATCCAAAG..........................1911.001.00------------------1.00---------------
................................................................................................ATTTATTATTATTATTTTTTCAA...................................................................................................................................231.000.00--1.00-------------------------------
............................................................................................................................................................................TTGTAATGTTTGGAACTTGCCTCTT.....................................................251.000.00----------------------1.00-----------
........................................................................................ATAGATTCATTTATTATTATTATTTTTTAACTG.................................................................................................................................3311.001.00-----1.00----------------------------
.................................................................................................................................................................................ATGTTTGGAACTTGCCTCTGCAGGT................................................2511.001.00----------------1.00-----------------
............................................................................................ATTCATTTATTATTATTATTTTTTAAC...................................................................................................................................2711.001.00--1.00-------------------------------
............................................................................................ATTCATTTATTATTATTATTTTTTAACTGCAA..............................................................................................................................3211.001.00-----1.00----------------------------
.................................CAGGATAAAAGGAAAGACTTAAGC.................................................................................................................................................................................................241.000.00-----1.00----------------------------
......................................................................................................................CTGCAAGGGTAATTGTA...................................................................................................................1711.001.00------1.00---------------------------
..............................................................................................................................GTAATTGTAAAATCATAGTGTAA.....................................................................................................2311.001.00------1.00---------------------------
................................................................................................................................................................................AATGTTTGGAACTTGC..........................................................1630.670.67---------0.67------------------------
..................................................................................................TTATTATTATTATTTTTTAACTG.................................................................................................................................2320.500.500.50---------------------------------
........................CTAGTAGAGCAGGATAA.................................................................................................................................................................................................................1720.500.50---------------------------------0.50
....................................................................................................................................GTAAAATCATAGTGTAA.....................................................................................................1720.500.50-------------------------0.50--------
....................................................................................................ATTATTATTATTTTTTAACTG.................................................................................................................................2150.200.20---0.20------------------------------

Antisense strand
AAGTTTTGCTCACTTTTATTTTTCCTAGTAGAGCAGGATAAAAGGAAAGACTTAAGTTCTTATTTATTTCTTTATACAGATCTGATAGATAGATTCATTTATTATTATTATTTTTTAACTGCAAGGGTAATTGTAAAATCATAGTGTAAAGTTTGTGTGGTGTTTCTGCTTTTTGTAATGTTTGGAACTTGCCTCTGCAGGTAAAATCCCAGAGGAATCCAAAGCCCTCTCTTTATTGGCTCCTGCTCCA
...................................................................................................................................((((....(((((........))))).((((((((.((..........))..)))))..)))..))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
......................................................AGTTCTTATTTATTTCTCTG................................................................................................................................................................................ 201.000.00-----------------------1.00----------