ID: uc003jtj.2_intron_0_0_chr5_63802617_f.5p
GENE: (1)
chr5:63802567-63802816+


(1)
B-CELL 		(6)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(7)
CERVIX 		(3)
HEART 		(3)
LIVER 		(2)
OTHER 		(14)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GCTCCGAGAGCGCCCACAAAACCCAACGAGCCCTGGACGACTGCAAGATGGTGGGTGAAAACTGCGCCTCTTTTTTTTTTTTTTTAATTGAGAGGGGGTGGGGGGAGTCATGTATGTTAATCATTTGCCTGAGTGCCAGCCACTCCCCCACCCTCAGCTCCTCAATGCCGATCACGTGGCACATGCACTATTTTTAAATCTGCAGTCCCCCAAATTCAGGGTGACACCCTGGTCGTAATAACCCTGCAGA
...............................................................((.((((((..((.........))..))))))((((.((((((((...((..((...(((......)))..))..)).))))))))))))...))............................................................................................
.............................................................62..................................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		GSM532884(GSM532884)
G871T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..................................................................CCTCTTTTTTTTTTTTTTTAATTTAG..............................................................................................................................................................2639.000.0017.0016.00-5.001.00--------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATTTAAG.............................................................................................................................................................277.000.004.003.00-----------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTACTG.................................................................................................................................................................236.000.001.001.00-2.002.00--------------------------------------------------
.......................CAACGAGCCCTGGACGACT................................................................................................................................................................................................................1914.004.00-------2.00--2.00--------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATTTTG..............................................................................................................................................................264.000.002.001.00-1.00---------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTACTAG................................................................................................................................................................244.000.001.00--2.001.00--------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTATTG.................................................................................................................................................................234.000.003.00---1.00--------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTACAG.................................................................................................................................................................233.000.00-1.00-1.001.00--------------------------------------------------
.........................ACGAGCCCTGGACGAAG................................................................................................................................................................................................................1722.500.50--------------------0.50-0.50------0.50--------------------0.50--0.50-
................................CTGGACGACTGCAAGATG........................................................................................................................................................................................................1812.002.00-------------1.00----------------------1.00------------------
...................................................................CTCTTTTTTTTTTTTTTTAATTCGG..............................................................................................................................................................252.000.002.00------------------------------------------------------
............CCCACAAAACCCAACGAG............................................................................................................................................................................................................................1812.002.00------2.00------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATTG................................................................................................................................................................2421.501.500.501.00-----------------------------------------------------
.........................ACGAGCCCTGGACGAAGCA..............................................................................................................................................................................................................1921.500.50---------------0.50---------------------------------0.50--0.50--
.........................ACGAGCCCTGGACGAA.................................................................................................................................................................................................................1621.500.50--------------------0.50-0.50----------------------------0.50---
..................................................................CCTCTTTTTTTTTTTTTTTAGCG.................................................................................................................................................................231.000.00-1.00-----------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATTTAGG.............................................................................................................................................................271.000.00---1.00---------------------------------------------------
.................................TGGACGACTGCAAGAAGC.......................................................................................................................................................................................................181.000.00----------------------------1.00--------------------------
............................AGCCCTGGACGACTGCAAGATGCT......................................................................................................................................................................................................241.000.00------------------------------1.00------------------------
................................................................CGCCTCTTTTTTTTTTTTTCG.....................................................................................................................................................................211.000.00-----1.00-------------------------------------------------
.................................TGGACGACTGCAAGATGC.......................................................................................................................................................................................................181.000.00---------1.00---------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAGGGG................................................................................................................................................................241.000.00-1.00-----------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTACTAA................................................................................................................................................................241.000.00----1.00--------------------------------------------------
....................................................................TCTTTTTTTTTTTTTTTAATTCAAT.............................................................................................................................................................251.000.00-1.00-----------------------------------------------------
........................................................................................................................................................................................................................................TCGTAATAACCCTGCAGATC201.000.00-----------------------1.00-------------------------------
..........................CGAGCCCTGGACGACTGCAAGATG........................................................................................................................................................................................................2411.001.00-------------------------1.00-----------------------------
..................................................................CCTCTTTTTTTTTTTTTTTACTTG................................................................................................................................................................241.000.001.00------------------------------------------------------
...........................GAGCCCTGGACGACTGCAAGATGC.......................................................................................................................................................................................................241.000.00--------1.00----------------------------------------------
..............................................................TGCGCCTCTTTTTTTCTT..........................................................................................................................................................................181.000.00-----1.00-------------------------------------------------
........................AACGAGCCCTGGACGACTGC..............................................................................................................................................................................................................2011.001.00--------1.00----------------------------------------------
..........................................................................................AGAGGGGGTGGGGGGAGTAGTA..........................................................................................................................................221.000.00-------------1.00-----------------------------------------
...................................................................CTCTTTTTTTTTTTTTTTAATAATT..............................................................................................................................................................251.000.00-----1.00-------------------------------------------------
...........................................................................................GAGGGGGTGGGGGGAGTGG............................................................................................................................................191.000.00------------------1.00------------------------------------
..............................................................TGCGCCTCTTTTTTTTAT..........................................................................................................................................................................181.000.00-----1.00-------------------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATTTAA..............................................................................................................................................................261.000.00----1.00--------------------------------------------------
.........................ACGAGCCCTGGACGACTGCC.............................................................................................................................................................................................................201.000.00---------1.00---------------------------------------------
.................................................................GCCTCTTTTTTTTTTTTTTATT...................................................................................................................................................................221.000.00-----1.00-------------------------------------------------
...................AACCCAACGAGCCCTGGACGACTGCA.............................................................................................................................................................................................................2611.001.00---------------------------------------------1.00---------
.......................CAACGAGCCCTGGACGAA.................................................................................................................................................................................................................181.000.00--------------1.00----------------------------------------
...................................................................CTCTTTTTTTTTTTTTTTAATAAAG..............................................................................................................................................................251.000.001.00------------------------------------------------------
.......................................................................................................................................CCAGCCACTCCCCCACCCTCAGC............................................................................................2311.001.00----------------1.00--------------------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATAAAG..............................................................................................................................................................261.000.001.00------------------------------------------------------
...............................CCTGGACGACTGCAAGATGCT......................................................................................................................................................................................................211.000.00----------------------------------------------1.00--------
..........................CGAGCCCTGGACGACTGCAA............................................................................................................................................................................................................2011.001.00--------------------------1.00----------------------------
.......................CAACGAGCCCTGGACGACTGCAAGA..........................................................................................................................................................................................................2511.001.00----------------------------------------1.00--------------
......................CCAACGAGCCCTGGACGACTGCAAGA..........................................................................................................................................................................................................2611.001.00---------------------------1.00---------------------------
..................................................................CCTCTTTTTTTTTTTTTTTAATTCTA..............................................................................................................................................................261.000.001.00------------------------------------------------------
.......................CAACGAGCCCTGGACGACTGCAAGATGCT......................................................................................................................................................................................................291.000.00-----------------------------------------1.00-------------
..............................................................TGCGCCTCTTTTTTTTTTTTT.......................................................................................................................................................................2120.500.50------------------------------------------------0.50------
.........................ACGAGCCCTGGACGAG.................................................................................................................................................................................................................1620.500.50-----------------------------0.50-------------------------
.........................ACGAGCCCTGGACGA..................................................................................................................................................................................................................1520.500.50--------------0.50----------------------------------------
.........................ACGAGCCCTGGACGAGAC...............................................................................................................................................................................................................1820.500.50-------0.50-----------------------------------------------
........................AACGAGCCCTGGACG...................................................................................................................................................................................................................1530.330.33------------------------------------------------------0.33
......................................................................TTTTTTTTTTTTTTTAATTGAGAGGG..........................................................................................................................................................2640.250.25------------------------------------------------0.25------

Antisense strand
GCTCCGAGAGCGCCCACAAAACCCAACGAGCCCTGGACGACTGCAAGATGGTGGGTGAAAACTGCGCCTCTTTTTTTTTTTTTTTAATTGAGAGGGGGTGGGGGGAGTCATGTATGTTAATCATTTGCCTGAGTGCCAGCCACTCCCCCACCCTCAGCTCCTCAATGCCGATCACGTGGCACATGCACTATTTTTAAATCTGCAGTCCCCCAAATTCAGGGTGACACCCTGGTCGTAATAACCCTGCAGA
...............................................................((.((((((..((.........))..))))))((((.((((((((...((..((...(((......)))..))..)).))))))))))))...))............................................................................................
.............................................................62..................................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		GSM532884(GSM532884)
G871T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM532879(GSM532879)
G659N. (cervix)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
........................................................................................................................................CAGCCACTCCCCCACTA................................................................................................. 174.000.00--2.00------------------------------------1.00-------1.00-------
........................................................................................................................................CAGCCACTCCCCCACTAA................................................................................................ 183.000.00--3.00----------------------------------------------------
........................................................................................................................................CAGCCACTCCCCCACTCG................................................................................................ 183.000.00--2.00---------------------1.00------------------------------
........................................................................................................................................CAGCCACTCCCCCACAAG................................................................................................ 182.000.00--2.00----------------------------------------------------
........................................................................................................................................CAGCCACTCCCCCACAAA................................................................................................ 182.000.00------------1.00---------------------1.00--------------------
........................................................................................................................................CAGCCACTCCCCCACTC................................................................................................. 172.000.00---------------1.00-----------------1.00---------------------
........................................................................................................................................CAGCCACTCCCCCACTCA................................................................................................ 182.000.00--2.00----------------------------------------------------
.......................................................................................................................................CCAGCCACTCCCCCACAAAT............................................................................................... 201.000.00------------1.00------------------------------------------
.......................................................................................................................................................................................................CTGCAGTCCCCCAAATA.................................. 171.000.00-----------------------------------1.00-------------------
........................................................................................................................................CAGCCACTCCCCCACTG................................................................................................. 171.000.00-------------------------------------1.00-----------------
.................................TGGACGACTGCAAGATCG....................................................................................................................................................................................................... 181.000.00-------------------------------------------1.00-----------
......................................................................................................................................GCCAGCCACTCCCCCACG.................................................................................................. 181.000.00--------------------------------------------1.00----------
........................................................................................................................................CAGCCACTCCCCCACTAG................................................................................................ 181.000.00-----------1.00-------------------------------------------
......................................................................................................................................GCCAGCCACTCCCCCACTT................................................................................................. 191.000.00--------------------------------1.00----------------------
.......................................................................................................................................CCAGCCACTCCCCCACT.................................................................................................. 171.000.00-------------------------------1.00-----------------------
.......................................................................................CCCCCCACCCCCTCTCAA................................................................................................................................................. 1811.001.00------------------------------------------1.00------------
........................................................................................................................................CAGCCACTCCCCCACT.................................................................................................. 161.000.00-----------1.00-------------------------------------------
........................................................................................................................................CAGCCACTCCCCCACTGCC............................................................................................... 191.000.00-------------------1.00-----------------------------------
........................................................................................................................................CAGCCACTCCCCCACTAGA............................................................................................... 191.000.00--1.00----------------------------------------------------
........................................................................................................................................CAGCCACTCCCCCACTAT................................................................................................ 181.000.00--1.00----------------------------------------------------
........................................................................................................................................CAGCCACTCCCCCACAAT................................................................................................ 181.000.00--1.00----------------------------------------------------
.....................................................................................................................................TGCCAGCCACTCCCCCACTCA................................................................................................ 211.000.00------1.00------------------------------------------------
...................................................................................................................................................................................................................AAATTCAGGGTGACATG...................... 171.000.00-----------------1.00-------------------------------------
.....................................................................................................................................GTGGGGGAGTGGCTGGCA................................................................................................... 1811.001.00---------------------1.00---------------------------------
........................................................................................................................................CAGCCACTCCCCCACTGT................................................................................................ 181.000.00--------------------------------------1.00----------------