ID: uc003jrn.2_intron_12_0_chr5_57754920_r.5p
GENE: (1)
chr5:57755317-57755566-


(1)
AGO1.ip 		(2)
AGO2.ip 		(3)
B-CELL 		(5)
BREAST 		(18)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(4)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCGACCCCACGACTGGGAAGCGCTACTGCCGGGGCAAAGTGCTGGGAAAGGTGACAAGCGGAGGGCGCCGGGCTGCCGGGCGGGCGGGAGGTCTGTCCGGGCGACCCCAAGCCGGGCAAGCCCGCGGGGTCCCTCGCCCGCCGCTTCCGGGTTTTTCGGGGGTCCGATCCCAGCGCGAGGTGGGCTCCTCACCTGCCCTCTGGCTTTTGTGCGCCGGCAGCGCTGGGGATCGGCTTTGCATTCTTAGCCT
.......................................................................((.((..((((((((((.((.((.(((((((...(((.....)))...))))).)))).))))))))))))......(((....((((....)))).))).))))..........................................................................
.......................................................................72.........................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
............................................................................CGGGCGGGCGGGAGGTCTG...........................................................................................................................................................19111.0011.00-10.00-----------1.00---------------------------------------------
...........................................................................CCGGGCGGGCGGGAGGTCTG...........................................................................................................................................................2017.007.001.003.00--1.00----------------------1.00------------1.00------------------
.....CCCACGACTGGGAAGCGC...................................................................................................................................................................................................................................1813.003.00--2.001.00-------------------------------------------------------
.....CCCACGACTGGGAAGCGCTACTGCCGGG.........................................................................................................................................................................................................................2813.003.003.00----------------------------------------------------------
........ACGACTGGGAAGCGCTACTGCCGGGGC.......................................................................................................................................................................................................................2713.003.003.00----------------------------------------------------------
.......CACGACTGGGAAGCGCTACTGC.............................................................................................................................................................................................................................2213.003.00----2.001.00-----------------------------------------------------
......CCACGACTGGGAAGCGCT..................................................................................................................................................................................................................................1812.002.00--------1.00-1.00------------------------------------------------
.........................................................GCGGAGGGCGCCGGGCTG...............................................................................................................................................................................1822.002.00---------------------------------------------------0.500.500.500.50----
...........................................................................CCGGGCGGGCGGGAGAGGG............................................................................................................................................................192.000.00-----------------1.00-------1.00---------------------------------
.........................................................................................................................................................................................................................CAGCGCTGGGGATCGGC................1712.002.00-2.00---------------------------------------------------------
.............................................................................GGGCGGGCGGGAGGTATTT..........................................................................................................................................................192.000.002.00----------------------------------------------------------
...ACCCCACGACTGGGAAG......................................................................................................................................................................................................................................1712.002.00--2.00--------------------------------------------------------
.................................................................................................................................................................................................................................GGGATCGGCTTTGCATTCTTAGC..2312.002.002.00----------------------------------------------------------
...ACCCCACGACTGGGAAGC.....................................................................................................................................................................................................................................1812.002.00--1.001.00-------------------------------------------------------
...........................................................................CCGGGCGGGCGGGAGAGG.............................................................................................................................................................182.000.00-------------------1.00----------------1.00----------------------
..........................................................................................................................................................TTCGGGGGTCCGATCCCAGCG...........................................................................2112.002.00--2.00--------------------------------------------------------
..............................................................................................................................................................................................ACCTGCCCTCTGGCTTTTGTGCGCCGGCAG..............................3012.002.002.00----------------------------------------------------------
................................................AGGTGACAAGCGGAGGG.........................................................................................................................................................................................1711.001.00-------1.00---------------------------------------------------
.................................GCAAAGTGCTGGGAAAGG.......................................................................................................................................................................................................1811.001.001.00----------------------------------------------------------
.......CACGACTGGGAAGCGCTAC................................................................................................................................................................................................................................1911.001.00----------1.00------------------------------------------------
...ACCCCACGACTGGGAAGCG....................................................................................................................................................................................................................................1911.001.00-----------------------1.00-----------------------------------
.........................................................................................................................................................................................TCCTCACCTGCCCTCTGGCTTTTGTGCGC....................................2911.001.00----------------1.00------------------------------------------
...ACCCCACGACTGGGAAGCGC...................................................................................................................................................................................................................................2011.001.001.00----------------------------------------------------------
.........CGACTGGGAAGCGCTACTGCCGGGGC.......................................................................................................................................................................................................................2611.001.00----1.00------------------------------------------------------
.......................................................................................................................................................TTTTTCGGGGGTCCGA...................................................................................1611.001.00---1.00-------------------------------------------------------
...........................................................................CCGGGCGGGCGGGAGAG..............................................................................................................................................................171.000.00-------1.00---------------------------------------------------
.............................................................................GGGCGGGCGGGAGGTC.............................................................................................................................................................1611.001.00----------------------------1.00------------------------------
..................................................GTGACAAGCGGAGGGCGCCGGGCTGCCGGGC.........................................................................................................................................................................3111.001.00-----1.00-----------------------------------------------------
.....................................................................................................................................................GGTTTTTCGGGGGTCCGATCCCAGCGC..........................................................................2711.001.00----------------------------------------------1.00------------
..........................................................................................................CCAAGCCGGGCAAGCATT..............................................................................................................................181.000.00----------------------1.00------------------------------------
.......................................................................................................ACCCCAAGCCGGGCACCA.................................................................................................................................181.000.00-----------------------------------------------1.00-----------
........................................................................................................................................................................CCCAGCGCGAGGTGGGCTCCTCACC.........................................................2511.001.00------------------------------------------------1.00----------
........................................................AGCGGAGGGCGCCGGGCTGCC.............................................................................................................................................................................2111.001.001.00----------------------------------------------------------
............................CCGGGGCAAAGTGCTGGGA...........................................................................................................................................................................................................1911.001.00---------------------1.00-------------------------------------
.......CACGACTGGGAAGCGCTACTGCCGGGGCAAAG...................................................................................................................................................................................................................3211.001.00---------------------------------------------1.00-------------
......CCACGACTGGGAAGCGCTACTGCCGGGG........................................................................................................................................................................................................................2811.001.00-----1.00-----------------------------------------------------
.......CACGACTGGGAAGCGCTACT...............................................................................................................................................................................................................................2011.001.00--------------------1.00--------------------------------------
..............GGGAAGCGCTACTGCCGGGTT.......................................................................................................................................................................................................................211.000.00---------------------------------1.00-------------------------
...........................................................................CCGGGCGGGCGGGAGGTG.............................................................................................................................................................181.000.00--------------------------------1.00--------------------------
....CCCCACGACTGGGAAGCGCT..................................................................................................................................................................................................................................2011.001.00---------------1.00-------------------------------------------
.......CACGACTGGGAAGCGCTC.................................................................................................................................................................................................................................181.000.00----------------------------------1.00------------------------
............................................................................CGGGCGGGCGGGAGGTCCCGG.........................................................................................................................................................211.000.00-------------------------------1.00---------------------------
.........................................................................................................................................................................CCAGCGCGAGGTGGGCTCCT.............................................................2011.001.00------------------------------1.00----------------------------
.....CCCACGACTGGGAAGCGCTACTGCCGGGG........................................................................................................................................................................................................................2911.001.001.00----------------------------------------------------------
.......CACGACTGGGAAGCGCTA.................................................................................................................................................................................................................................1811.001.00--------------------------------------------------1.00--------
.........................................................................................................CCCAAGCCGGGCAAGGGGG..............................................................................................................................191.000.00-------------------------------------------1.00---------------
.............................................................................GGGCGGGCGGGAGGTTTTT..........................................................................................................................................................191.000.001.00----------------------------------------------------------
...............................................................GGCGCCGGGCTGCCGGG..........................................................................................................................................................................1711.001.00---1.00-------------------------------------------------------
....................................................................................CGGGAGGTCTGTCCGGGC....................................................................................................................................................1811.001.00--1.00--------------------------------------------------------
........ACGACTGGGAAGCGCTACTGCCGGGGCAAAGTG.................................................................................................................................................................................................................3311.001.00-----1.00-----------------------------------------------------
...........................................................................CCGGGCGGGCGGGAGGTCTGT..........................................................................................................................................................2111.001.00-----------1.00-----------------------------------------------
..........................................................CGGAGGGCGCCGGGCTGC..............................................................................................................................................................................1821.001.00---1.00-------------------------------------------------------
............................................................GAGGGCGCCGGGCTGAGGC...........................................................................................................................................................................191.000.00---------------------------------------1.00-------------------
............CTGGGAAGCGCTACTGC.............................................................................................................................................................................................................................1711.001.00--------------------------------------------1.00--------------
...ACCCCACGACTGGGAAGCGCT..................................................................................................................................................................................................................................2111.001.001.00----------------------------------------------------------
..........GACTGGGAAGCGCTACTGCCGGGG........................................................................................................................................................................................................................2411.001.001.00----------------------------------------------------------
........ACGACTGGGAAGCGCGACT...............................................................................................................................................................................................................................191.000.00------1.00----------------------------------------------------
....................................................................CGGGCTGCCGGGCGGGAC....................................................................................................................................................................181.000.00--------------------------1.00--------------------------------
................................................................................CGGGCGGGAGGTCTGTCCGGGCGACC................................................................................................................................................2611.001.00---------1.00-------------------------------------------------
................................................................................CGGGCGGGAGGTCTGCC.........................................................................................................................................................171.000.00------------------1.00----------------------------------------
......CCACGACTGGGAAGCGCTACTG..............................................................................................................................................................................................................................2211.001.00----1.00------------------------------------------------------
.................................................................................................................................................................GTCCGATCCCAGCGCGAGGTGG...................................................................2211.001.00-----1.00-----------------------------------------------------
.........CGACTGGGAAGCGCTAC................................................................................................................................................................................................................................1711.001.00------------1.00----------------------------------------------
..........................................................................................................................................................................................CCTCACCTGCCCTCTGGCTTTTGT........................................2411.001.00-----------------------------------------1.00-----------------
....................................AAGTGCTGGGAAAGGATT....................................................................................................................................................................................................181.000.00------1.00----------------------------------------------------
.CGACCCCACGACTGGGAAGCG....................................................................................................................................................................................................................................2111.001.00---1.00-------------------------------------------------------
................................................................................CGGGCGGGAGGTCTGTTGGC......................................................................................................................................................201.000.00-----------------------------1.00-----------------------------
..........GACTGGGAAGCGCTACT...............................................................................................................................................................................................................................1711.001.00--------1.00--------------------------------------------------
........ACGACTGGGAAGCGCTACTGCC............................................................................................................................................................................................................................2211.001.00-------------------------------------1.00---------------------
........ACGACTGGGAAGCGCTACT...............................................................................................................................................................................................................................1911.001.00------1.00----------------------------------------------------
.................................GCAAAGTGCTGGGAAAG........................................................................................................................................................................................................1720.500.500.50----------------------------------------------------------
..........................................................CGGAGGGCGCCGGGCTGCGGAT..........................................................................................................................................................................2220.501.00----0.50------------------------------------------------------
............................................................................CGGGCGGGCGGGAGGTATT...........................................................................................................................................................1950.200.20--------------------------------------------------------0.20--
............................................................................CGGGCGGGCGGGAGGT..............................................................................................................................................................1650.200.20-------------------------------------------------------0.20---

Antisense strand
TCGACCCCACGACTGGGAAGCGCTACTGCCGGGGCAAAGTGCTGGGAAAGGTGACAAGCGGAGGGCGCCGGGCTGCCGGGCGGGCGGGAGGTCTGTCCGGGCGACCCCAAGCCGGGCAAGCCCGCGGGGTCCCTCGCCCGCCGCTTCCGGGTTTTTCGGGGGTCCGATCCCAGCGCGAGGTGGGCTCCTCACCTGCCCTCTGGCTTTTGTGCGCCGGCAGCGCTGGGGATCGGCTTTGCATTCTTAGCCT
.......................................................................((.((..((((((((((.((.((.(((((((...(((.....)))...))))).)))).))))))))))))......(((....((((....)))).))).))))..........................................................................
.......................................................................72.........................................................................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................CCCTCGCCCGCCGCTCTGT..................................................................................................... 191.000.00--------------1.00--------------------------------------------
................................................................GCGCCGGGCTGCCGGGT......................................................................................................................................................................... 171.000.00-------------------------------------------------1.00---------
........................................................................................................................................................................................................................GCAGCGCTGGGGATCGGAA............... 191.000.00--------------------------------------1.00--------------------
................................................................................................................................................................CTCGCGCTGGGATCGGACC....................................................................... 1911.001.00--1.00--------------------------------------------------------
...............................................................................................................................................................................................................................TGGGGATCGGCTTTGCATT........ 191.000.00------------------------------------------1.00----------------
..................................................................................................................................................................................................GCGCACAAAAGCCAGAGGGC.................................... 2011.001.00---------1.00-------------------------------------------------
...............................................................................GCGGGCGGGAGGTCTTGCC........................................................................................................................................................ 191.000.00-----------------------------------1.00-----------------------
...................................................................................................................................CCTCGCCCGCCGCTTCTACG................................................................................................... 201.000.00------------------------1.00----------------------------------
...............................................................CGGCAGCCCGGCGCC............................................................................................................................................................................ 1570.140.14---------------------------------------------------------0.14-
..........................................................................CTCCCGCCCGCCCGGC................................................................................................................................................................ 1680.120.12----------------------------------------------------------0.12