ID: uc003jot.1_intron_0_0_chr5_52084249_f.3p
GENE: (1)
chr5:52119947-52120196+


(3)
B-CELL
(2)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(2)
LIVER
(3)
OTHER
(2)
SKIN

Sense strand
ATATATATAGTAATCATTAAATCAAATAATTATAAGTCACTTACCAAAGGAATTAAATATGGAAAATGCATTTGAATATGTACATGATTCATCCACATTTTAATATCTATCCTTACTTCTGTTTCCTTTTGTCTCCCATTAATGATAAAATAGCTGAGAAGATTGTTCTCTCTTTTCTTTCTTTTTTTTTTTTTTTTTAGACGGAATCTTGCTCTGTTGCCCAGGCTGGAGCGGAATGGCATGATCCCAG
...........................................................................................................................................................(((.(((....))))))..((((.(((................))).))))............................................
.........................................................................................................................................138.....................................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
..............................................................................................................................................TGATAAAATAGCTGAGAATC........................................................................................2010.000.00------10.00------------------
..............................................................................................................................................TGATAAAATAGCTGAATC..........................................................................................187.000.00------7.00------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCCG.................................................295.000.00--3.001.00-1.00-------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTAG..................................................2984.254.25-0.381.750.38-1.75-------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTAAG.............................................................204.000.00--2.001.00-1.00-------------------
.............................................................................................................................................................................TTTCTTTCTTTTTTTTTTTTTTTTTACCC................................................294.000.004.00------------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTCG................................................304.000.001.00-3.00----------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTTTAG.......................................................303.000.00--2.001.00---------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGACGGGG............................................282.000.002.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTCTC...................................................292.000.001.001.00-----------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTTTG........................................................282.000.001.00----1.00-------------------
...................................................................................................................................................AAATAGCTGAGAAGATTG.....................................................................................1812.002.00---------2.00---------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTAAAG....................................................292.000.00-1.00-1.00---------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTG.........................................................262.000.00-1.001.00----------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTTTTTTG.....................................................312.000.00--1.00--1.00-------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTAG..........................................................272.000.00-1.00-1.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTCT................................................302.000.00--1.001.00---------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTTTTTAG...................................................322.000.00--1.001.00---------------------
.........................................................................................................................................................................................................................TGCCCAGGCTGGAGCGGAATGGCAC........252.000.001.00---1.00--------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTTTAGACGGGGG...........................................262.000.00----2.00--------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTATG.................................................312.000.00--1.00--1.00-------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTCG.......................................................262.000.00---2.00---------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTTTAGACGGGGGC..........................................272.000.001.00---1.00--------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTAG.........................................................282.000.00--1.001.00---------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTATG..................................................302.000.00-----2.00-------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTCCCC..................................................302.000.002.00------------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTATTT...................................................302.000.00-1.00-1.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTACAAG...............................................312.000.00--1.001.00---------------------
..............................................................................................................................................TGATAAAATAGCTGAGAT..........................................................................................182.000.00--------2.00----------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTATT..................................................302.000.00-2.00-----------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTTTTTTTTTG..................................................342.000.00--1.00--1.00-------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTAAAC.....................................................271.000.00----1.00--------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTGAAG................................................321.000.00----1.00--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAATGGCAC........261.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTCCTC....................................................281.000.001.00------------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTTTAGACCCTG............................................251.000.001.00------------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTTTTAG..................................................3111.001.00-1.00-----------------------
...................................................ATTAAATATGGAAAATAAAC...................................................................................................................................................................................201.000.00-------------1.00-----------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTCA................................................301.000.00-----1.00-------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTGGAG.........................................................251.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTCGC.........................................................251.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTCAG.....................................................291.000.00-----1.00-------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTATTG......................................................251.000.00---1.00---------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTCGAA.......................................................241.000.00---1.00---------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTCTGT..........................................................251.000.001.00------------------------
............................................................................................................................................................................................................AATCTTGCTCTGTTGCCCAGGCTGGCT...................271.000.001.00------------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAACGG...........231.000.00----1.00--------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAAAAG.............................................261.000.00-------1.00-----------------
......................................................................................................................................................................................................................TGTTGCCCAGGCTGGAGCGGAACG............241.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTTTTAAAG................................................331.000.00---1.00---------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTCG.............................................................231.000.00-1.00-----------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAATGGTGTG.......271.000.00-------1.00-----------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTAG.......................................................281.000.00---1.00---------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTCAAG...................................................301.000.00-----1.00-------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTTAG......................................................291.000.00-----1.00-------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTTG.........................................................281.000.00-----1.00-------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAGCAG...........231.000.00----1.00--------------------
.............................................................................................................................................................................TTTCTTTCTTTTTTTTTTTTTTTTTAGCCT...............................................301.000.001.00------------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAAGGG.............................................261.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTCTTG..........................................................231.000.00---1.00---------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTCCG...................................................291.000.00---1.00---------------------
................................................................................................ATTTTAATATCTATCCTTTTTT....................................................................................................................................221.000.00-------1.00-----------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTTCAG...................................................311.000.00---1.00---------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCGTG................................................301.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTCTCG.................................................311.000.00-----1.00-------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTCACT................................................321.000.00-1.00-----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTACA............................................................221.000.00---1.00---------------------
..........................................................................................ATCCACATTTTAATAGCA..............................................................................................................................................181.000.00-------1.00-----------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTACATG...............................................321.000.00-----1.00-------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTGCAG......................................................271.000.00-------1.00-----------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTATTTT...............................................331.000.00-----1.00-------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGAAAGC.............................................281.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTAT........................................................261.000.00---1.00---------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTCTAG.......................................................261.000.00-------1.00-----------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGCTG..............................................271.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTCCCG.......................................................251.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTAG.........................................................241.000.00---1.00---------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGCCG...............................................261.000.001.00------------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTATAG........................................................251.000.00-----1.00-------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGCGCG............221.000.001.00------------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTTTTTTAG....................................................321.000.00--1.00----------------------
.............................................................................................................................................................................TTTCTTTCTTTTTTTTTTTTTTTTTAGGCGG..............................................311.000.001.00------------------------
...........................................................................................................................TCCTTTTGTCTCCCAATC.............................................................................................................181.000.00------------1.00------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTCTT....................................................291.000.00---1.00---------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTGGC........................................................261.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTACGG.......................................................251.000.001.00------------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTCTTT.......................................................301.000.00-------1.00-----------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTCAAT...................................................301.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTCTAT.......................................................251.000.00--1.00----------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAATTT.............................................261.000.00-1.00-----------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGCCGT..............................................261.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTAATT.......................................................251.000.00----1.00--------------------
................................................................................................................................................................................................................TTGCTCTGTTGCCCAGGCTGGAGCGGTGC.............291.000.00----1.00--------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTGCC........................................................261.000.001.00------------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTCCAG.................................................301.000.00--1.00----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTTATG...................................................311.000.00-1.00-----------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTTAG....................................................291.000.00-1.00-----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTAAAG...........................................................231.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTAT...................................................291.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTCCCG..................................................301.000.00--1.00----------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGCTC..............................................271.000.00----1.00--------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTGCT..........................................................241.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTCTA........................................................261.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTCTCC................................................321.000.00----1.00--------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTCTTG......................................................281.000.00---1.00---------------------
................................................................................................................................................................................CTTTCTTTTTTTTTTTTTTTTTAGACGGGG............................................301.000.00-----1.00-------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTCAAG......................................................271.000.00---1.00---------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGACGGGT............................................271.000.001.00------------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGAGAAC.............................................261.000.00--1.00----------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTTTTTTAG....................................................331.000.00-1.00-----------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTCAAG....................................................291.000.00-1.00-----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTCCG........................................................261.000.00---1.00---------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTTTTG.......................................................291.000.00---1.00---------------------
............................................................................................................................................................AGAAGATTGTTCTCTCTTTT..........................................................................2011.001.00------------------1.00------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTCGGT.................................................311.000.001.00------------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTCATG.................................................301.000.00-------1.00-----------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTTTTTAG.....................................................321.000.00-1.00-----------------------
..........................................................................................................................................................................................................................GCCCAGGCTGGAGCGGAATGGGACC.......251.000.00----1.00--------------------
................................................................................................................................................................................................................................GCTGGAGCGGAATGGCA.........1711.001.00-------------------1.00-----
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGGG...............................................261.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTCTAT..................................................301.000.00-----1.00-------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTTTTTTAA..................................................331.000.00--1.00----------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTACAAA...............................................311.000.00--1.00----------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTGG.........................................................241.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTCCCC.................................................311.000.001.00------------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTAAAG..............................................................211.000.00---1.00---------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTTAG........................................................281.000.00--1.00----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTCTTT.......................................................271.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTAG........................................................261.000.00---1.00---------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTCG.........................................................271.000.00-----1.00-------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTTTTTTCTAG..................................................351.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTCAAT....................................................281.000.00-1.00-----------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTTTG......................................................291.000.00--1.00----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTCCCA.......................................................251.000.00-------1.00-----------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTAG..........................................................261.000.00--1.00----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTTTC....................................................301.000.001.00------------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTTTCAAG.................................................321.000.00-----1.00-------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTTAGC...................................................311.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTCAG....................................................291.000.00-1.00-----------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAGCG............221.000.00----1.00--------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTGGTC.........................................................251.000.001.00------------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGACGGGGT...........................................291.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTGTT...........................................................231.000.001.00------------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGACGGGGC...........................................291.000.001.00------------------------
......................................................................................................................................................................................................................TGTTGCCCAGGCTGGAGCGGAGGGC...........251.000.00----1.00--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAATGGAGTG.......271.000.00----1.00--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGGGC.............211.000.001.00------------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTACAG.....................................................261.000.00---1.00---------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTAAG........................................................251.000.00---1.00---------------------
......................................................................................................................................................................................TTTTTTTTTTTTTTTTAGACGGAATCCC........................................281.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTGG.....................................................281.000.00-1.00-----------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTCTG.........................................................241.000.001.00------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTCCAG....................................................281.000.00-1.00-----------------------
.............................................................................................................................................................................................................................CAGGCTGGAGCGGAAGCG...........181.000.00---------------1.00---------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGACGGGAG...........................................291.000.00----1.00--------------------
.........................................................................................................................................................................................................CGGAATCTTGCTCTGT.................................1601.001.00-----------1.00-------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTTCAG.....................................................301.000.00-1.00-----------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTGGC............................................................221.000.001.00------------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTTTCAG........................................................281.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTCCAG.................................................311.000.00--1.00----------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGACGGGGTC..........................................311.000.001.00------------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGCCGG..............................................261.000.00----1.00--------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTCGAG...................................................311.000.001.00------------------------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGCCTG..............................................261.000.001.00------------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTCAG....................................................301.000.00---1.00---------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTCTAG................................................311.000.00-1.00-----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTCCG.................................................301.000.00--1.00----------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGGACT..............................................271.000.001.00------------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCCCC................................................301.000.001.00------------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCTAG................................................301.000.00-1.00-----------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTGG......................................................271.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTCGCG....................................................281.000.00----1.00--------------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGACGGACTCT.........................................301.000.001.00------------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTCGAG........................................................291.000.00----1.00--------------------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGAACCA.............................................281.000.00-------1.00-----------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTCAAG.....................................................281.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTGGGA...................................................291.000.00----------------1.00--------
.................................................................................................................................................................................TTTCTTTTTTTTTTTTTTTTTAGAAAGG.............................................281.000.001.00------------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTAAA........................................................251.000.00--1.00----------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGGACG............221.000.001.00------------------------
......................................................................................................................................................................................................................TGTTGCCCAGGCTGGAGCGTAGC.............231.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTAG......................................................271.000.00-----1.00-------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTAGACGG..............................................3211.001.001.00------------------------
......................................................................................................................................................................TCTCTCTTTTCTTTCTTTTTTTTCTTG.........................................................271.000.001.00------------------------
...................................................................................................................CTTCTGTTTCCTTTTGTTTTG..................................................................................................................211.000.001.00------------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTCCAG................................................311.000.00-1.00-----------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTAG.........................................................261.000.00--1.00----------------------
....................................................................................................................................................................GTTCTCTCTTTTCTTTGTG...................................................................191.000.00-----------------1.00-------
..................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTAGACGGGCC...........................................291.000.001.00------------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTTTTTTACAG..................................................311.000.00-1.00-----------------------
................................................................................................................................................................................................................TTGCTCTGTTGCCCAGGCTGGAGCGGGGC.............291.000.00----1.00--------------------
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTTTAG...................................................311.000.00-1.00-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTACGG......................................................261.000.001.00------------------------
............................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTTTTTTTCGGG................................................301.000.001.00------------------------
............................................................................................................................................................................................................AATCTTGCTCTGTTGCCGGCC.........................211.000.00----1.00--------------------
.........................................................................................................................................................................CTCTTTTCTTTCTTTTTTTTTTCTG........................................................251.000.00-----1.00-------------------
.........................................................................................................................................................................................................................TGCCCAGGCTGGAGCGGAATGGTG.........2420.500.50----0.50--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAATGGCG.........2520.500.50---------------------0.50---
.................................................................................................................................................................................................................TGCTCTGTTGCCCAGGCTGGAGCGG................2520.500.500.50------------------------
......................................................................................................................................................................................................................TGTTGCCCAGGCTGGAGCGGAATGGC..........2620.500.50----0.50--------------------
..............................................................................................................................................................................................................................AGGCTGGAGCGGAATGGC..........1820.500.50---------0.50---------------
.........................................................................................................................................................................................................................TGCCCAGGCTGGAGCGGAATG............2120.500.50----0.50--------------------
........................................................................................................................................................................................................................TTGCCCAGGCTGGAGCGGAATGGC..........2420.500.500.50------------------------
.........................................................................................................................................................................................................................TGCCCAGGCTGGAGCGGAATGG...........2220.500.50----------------------0.50--
........................................................................................................................................................................TCTCTTTTCTTTCTTTTTTTTTTTTTTTTTA...................................................3120.500.50-0.50-----------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTAG..................................................3060.330.330.170.17-----------------------
.....................................................................................................................................................................TTCTCTCTTTTCTTTCTTTTTTTTTTTTT........................................................2940.250.25-0.25-----------------------
...............................................................................................................................................................................TCTTTCTTTTTTTTTTTTTTTTTAGACGG..............................................2950.200.200.20------------------------
..........................................................................................................................................................................TCTTTTCTTTCTTTTTTTTTTTTTTTTTAGTT................................................3260.170.330.17------------------------
.......................................................................................................................................................................CTCTCTTTTCTTTCTTTTTTTTTTTTTTTTT....................................................3160.170.17-0.17-----------------------
...........................................................................................................................................................................CTTTTCTTTCTTTTTTTTTTTTTTTTTAGG.................................................3080.124.25---0.12---------------------

Antisense strand
ATATATATAGTAATCATTAAATCAAATAATTATAAGTCACTTACCAAAGGAATTAAATATGGAAAATGCATTTGAATATGTACATGATTCATCCACATTTTAATATCTATCCTTACTTCTGTTTCCTTTTGTCTCCCATTAATGATAAAATAGCTGAGAAGATTGTTCTCTCTTTTCTTTCTTTTTTTTTTTTTTTTTAGACGGAATCTTGCTCTGTTGCCCAGGCTGGAGCGGAATGGCATGATCCCAG
...........................................................................................................................................................(((.(((....))))))..((((.(((................))).))))............................................
.........................................................................................................................................138.....................................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
.......................................................................................................................................................................................................GACGGAATCTTGCTCTGTTGCCCAGGCTCG..................... 301.000.001.00------------------------
.........................................................................................................................................................................................................CGGAATCTTGCTCTGTTGCCCAGGCTGGACCTC................ 331.000.001.00------------------------
........................................................................................................................................................................................................ACGGAATCTTGCTCTGTTGCCCAGTTTT...................... 281.000.00--------------------1.00----
.......................................................................................................................................................................................................GACGGAATCTTGCTCTGTTGCCCACTA........................ 271.000.00----1.00--------------------
........................................................................................................................................................................................................ACGGAATCTTGCTCTGTTGCCCAGTTAA...................... 281.000.00--------------1.00----------
..........................................................................................................................................................................................................................................AATGGCATGATCCCAGACA 191.000.00----------1.00--------------
................................................................................................................................................................................CTTTCTTTTTTTTTTTTTTTTTAGGATC.............................................. 281.000.00------1.00------------------
..............................................................................................................................................TGATAAAATAGCTGACTTG......................................................................................... 191.000.00--------1.00----------------
..................................................................................................................................................................TTGTTCTCTCTTTTCTTTCT.................................................................... 201.000.00-------1.00-----------------
...................................................................................................................................................................................................CAGCCTGGGCAACAGAGCAAGATTCCGTCTAAA...................... 3360.170.17-----------------------0.17-
.....................................................................................................................................................................................................GGGCAACAGAGCAAGATTCCGTCTA............................ 2570.140.14------------------------0.14