ID: uc003jnr.3_intron_5_0_chr5_43296020_r.3p
GENE: (5)
chr5:43295970-43296219-


(1)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(5)
CELL-LINE 		(1)
CERVIX 		(4)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
XRN.ip

Sense strand
AATTAGTGACATAGTACATATTGTTTCATCTTTGAGTGTCTTTTTAAATGTATACTTTAAGGTATAGAGAGGTTTCATTATACAGTGTATTTGTGGTTGCTGTTTAAACATATACAAATATCCTAGCTTTATTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTT
........................................................................................................................................((((((((((.......((((((.....))))))......))))).....)))))...........................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR040042(GSM532927)
G428N. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...............................................................................................................................TTTATTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAG..................................................7319.009.007.00--2.00-----------------
...................................................................................................................................TTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTC....................................................6718.008.008.00--------------------
...............................................................................................................................................ACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTC....................................................5517.007.007.00--------------------
............................................................................................................................................CAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAG..................................................6014.004.003.00-----1.00--------------
..............................................................................................................................CTTTATTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAG..................................................7414.004.004.00--------------------
........................................................................................................................................AAGTCAAACTTTAAACTGA...............................................................................................193.000.00--3.00------------------
....................................................................................................................................................................................................................................TGATTTTGGCTTCATGAT....1813.003.00-3.00-------------------
................................................................................................................................TTATTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAG..................................................7213.003.00---3.00-----------------
.................................................................................................................................................................................GTTTCCTTGGACTTCTCTTT.....................................................2013.003.00-----3.00---------------
...........................................................................................................................................TCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAGTT................................................633.000.003.00--------------------
.................................................................................................................................TATTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAG..................................................7112.002.002.00--------------------
...................................................................................................................................................................................TTCCTTGGACTTCTCTTTC....................................................1912.002.00----2.00----------------
......................................................................................................................................................................................................................GATTTTACCTTGAATGATTTTGGCTT..........2612.002.00-2.00-------------------
........................................................................................................................................................................AATTTCATAGTTTCCTTGGACTT...........................................................2311.001.00----------1.00----------
........................................................................................................................................................................................................AGGGAAATGATAAAGATTT...............................1911.001.00---------------1.00-----
...............................................................................................................................................................................................................................TTGAATGATTTTGGCTTCATG......2111.001.00------------------1.00--
.............................................................................................................................................................................CATAGTTTCCTTGGACTTCTCTTTCAG..................................................2711.001.00----1.00----------------
................................................................................................................................................................................................................................TGAATGATTTTGGCTTCATG......2011.001.00-1.00-------------------
...................................................................................................................................................................................................................AAAGATTTTACCTTGAATGATTTT...............2411.001.00--------1.00------------
...........................ATCTTTGAGTGTCTTTTTA............................................................................................................................................................................................................1911.001.00-1.00-------------------
....................................................................................................................................................................................................................AAGATTTTACCTTGAATGACTT................221.000.00--------------1.00------
..............TACATATTGTTTCATTTAG.........................................................................................................................................................................................................................191.000.00-------------------1.00-
.................................................................................ACAGTGTATTTGTGGTTGCT.....................................................................................................................................................2011.001.00------------1.00--------
.......................................................................................................................................AAAGTCAAACTTTAAACTGA...............................................................................................201.000.00--1.00------------------
........................................................................................................................................................................................................AGGGAAATGATAAAGATTTA..............................2011.001.00-------------1.00-------
........................................................................................................................................................................................TGGACTTCTCTTTCAGAGGG..............................................2011.001.00----1.00----------------
............................................................................................................................................................................................................................ACCTTGAATGATTTTGGC............1811.001.00-----------------1.00---
....................................................................................................TGTTTAAACATATACAAACATG................................................................................................................................221.000.00-----------1.00---------
.......................................................................GTTTCATTATACAGTGTATTTGTGGTTGCTG....................................................................................................................................................3111.001.00----------------1.00----
.....................................................................................................................................................................................................CAGAGGGAAATGATAAAGAT.................................2011.001.00-1.00-------------------
.................................................................................................................................................................................................................................GAATGATTTTGGCTTCATGATA...221.000.00-1.00-------------------
......................................................................................................................................................................................................AGAGGGAAATGATAAGAT..................................181.000.00---------1.00-----------
..................................................................................................................................................................................TTTCCTTGGACTTCTCTTT.....................................................1920.500.50----0.50----------------
........................................................................................................................................................................AATTTCATAGTTTCCTTGG...............................................................1930.330.33--------------------0.33

Antisense strand
AATTAGTGACATAGTACATATTGTTTCATCTTTGAGTGTCTTTTTAAATGTATACTTTAAGGTATAGAGAGGTTTCATTATACAGTGTATTTGTGGTTGCTGTTTAAACATATACAAATATCCTAGCTTTATTCTAAAGTCAAACTTTAAAATTTCATGGCTTATATGAATTTCATAGTTTCCTTGGACTTCTCTTTCAGAGGGAAATGATAAAGATTTTACCTTGAATGATTTTGGCTTCATGATCTTT
........................................................................................................................................((((((((((.......((((((.....))))))......))))).....)))))...........................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR040042(GSM532927)
G428N. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...........................................................................................................................................TCAAACTTTAAAATTACTT............................................................................................ 191.000.00--1.00------------------
..........................................................................................................................................................................................................................................TGGCTTCATGATCTTTTAAA 201.000.00-------1.00-------------