| (1) BRAIN | (1) BREAST | (8) CELL-LINE | (1) FIBROBLAST | (5) HEART | (3) HELA | (2) OTHER | (1) RRP40.ip | (7) SKIN | (1) XRN.ip |
| TTTATGTACATCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGGTAATTGACTTAGCTGCTTTGTCAGTATTCATGGATCCAGTTACAGAGATAGTGCATCCCTGGGGCCATTCGAGATGATGGGGAACTAGAGCTGAGCAGAAAGTCTGGTCTTGGATCTTAGTAAGAGCTTCTCATGTGTCTATCATCATGGGGATATGATGGTCTATGCCTCTGTGCAGGCTGACAGTGCCTTGTCATCA ......................................................(((.(((((((.((..((((......((((..((((.(((.......))).....))))..))))......))))..))......))))))))))..................................................................................................... ..................................................51...................................................................................................152................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR029128(GSM416757) H520. (cell line) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR330871(SRX091709) tissue: skin psoriatic involveddisease state:. (skin) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR189784 | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189782 | SRR037937(GSM510475) 293cand2. (cell line) | SRR330896(SRX091734) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577744(Rovira) total RNA. (breast) | SRR363673(GSM830250) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330890(SRX091728) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................CGAGATGATGGGGAACTAGAGCTGAGC....................................................................................................... | 27 | 1 | 28.00 | 28.00 | 18.00 | - | 7.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - |
| ..................................................GTAATTGACTTAGCTGCT...................................................................................................................................................................................... | 18 | 1 | 9.00 | 9.00 | - | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAATTGACTTAGCTGC....................................................................................................................................................................................... | 17 | 1 | 6.00 | 6.00 | - | 4.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................TCGAGATGATGGGGAACTAGAGCTGAGC....................................................................................................... | 28 | 1 | 5.00 | 5.00 | 4.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................ATGGGGAACTAGAGCTGAGCA...................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................AGAAAGTCTGGTCTTGGATCT.................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................CGAGATGATGGGGAACTAGAGCTGA......................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................AAAAATATGAGAAAAGAATTGAGCGTT.................................................................................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................CGAGATGATGGGGAACTAGAGCTGAGA....................................................................................................... | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............CCTTATAAAGGGAGAAAAATA........................................................................................................................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAATTGACTTAGCTGCTCTG................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................TGCCTCTGTGCAGGCACC................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................CGAGATGATGGGGAACTAGAGCT........................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................GATGGTCTATGCCTCTGTGCAGGCTGA................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..TATGTACATCGCCTTATAAAGGG................................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................ATCATCATGGGGATATGA......................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............CCTTATAAAGGGAGAAAAA.......................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................TATGAGAAAAGAATTCTG........................................................................................................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..........TCGCCTTATAAAGGGAGA.............................................................................................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................GAGATGATGGGGAACTCTG.............................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................TGGGGAACTAGAGCTGACAG...................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .........................AGAAAAATATGAGAAAAGAATTGAGCG...................................................................................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................TGTCTATCATCATGGGGATATGA......................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................GCTGACAGTGCCTTGTGGA.. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................AGCTGAGCAGAAAGTC............................................................................................... | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| .................................................................................................................................................................................................................TGGTCTATGCCTCTGT......................... | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTTATGTACATCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGGTAATTGACTTAGCTGCTTTGTCAGTATTCATGGATCCAGTTACAGAGATAGTGCATCCCTGGGGCCATTCGAGATGATGGGGAACTAGAGCTGAGCAGAAAGTCTGGTCTTGGATCTTAGTAAGAGCTTCTCATGTGTCTATCATCATGGGGATATGATGGTCTATGCCTCTGTGCAGGCTGACAGTGCCTTGTCATCA ......................................................(((.(((((((.((..((((......((((..((((.(((.......))).....))))..))))......))))..))......))))))))))..................................................................................................... ..................................................51...................................................................................................152................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR029128(GSM416757) H520. (cell line) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR342895(SRX096791) small RNA seq of Left atrial tissue. (heart) | SRR330871(SRX091709) tissue: skin psoriatic involveddisease state:. (skin) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR189784 | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin) | SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line) | SRR189782 | SRR037937(GSM510475) 293cand2. (cell line) | SRR330896(SRX091734) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330861(SRX091699) tissue: skin psoriatic involveddisease state:. (skin) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577744(Rovira) total RNA. (breast) | SRR363673(GSM830250) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330890(SRX091728) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................AGAAAAGAATTGAGGTTTCG.................................................................................................................................................................................................. | 20 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................ATTCTTTTCTCATATTTTTCT............................................................................................................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................GAAAAGAATTGAGGTAT.................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................AATATGAGAAAAGAATTGAGGA...................................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................TAAAGGGAGAAAAATATGAT.................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |