ID: uc003jkt.1_intron_21_0_chr5_37331898_r.5p
GENE: NUP155(13)
chr5:37333365-37333614-


(1)
B-CELL
(10)
CELL-LINE
(1)
CERVIX
(1)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
TACAGCAGCACATGTTACCTCCGAAGAAATTTGTTCTCCTCTCAGCACAGGTGTGTACGTATTCTGTTATGGTAGTGACAAAAATAAGCGATGTATAATATTTTTGTCAAGTTCTCTGAAGTAGTGGCTTAATTGAATAATTTTCTTTCTTTTTTTTTTGAGACGGAGTCTCGCTCATCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCTGCCTCCCCAGATCAAGCAATTCTC
..............................................................................................................................................((((.((((........)))).))))...((((...(((((.....)).))).))))...................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTTATTG.......................................................................................2719.000.00--12.002.004.001.00--------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGGTC.......................................................................................247.000.006.001.00------------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTATTG........................................................................................265.000.00--1.004.00----------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTTTTTG.......................................................................................275.000.00--1.002.001.001.00--------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTGGTC..........................................................................................213.000.003.00-------------------
...........................................................................................................................................................................................................................AACCTCTGCCTCCCCAGGCG...........203.000.003.00-------------------
..........................................................................................................................................AATTTTCTTTCTTTTTTTTTACG.........................................................................................233.000.00---1.00-2.00--------------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTTCAG..........................................................................................232.000.00----2.00---------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTTCCAG.......................................................................................272.000.00---1.00----1.00-----------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGGTTC......................................................................................252.000.00-2.00------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGCG........................................................................................231.000.00-1.00------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGGT........................................................................................231.000.001.00-------------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTATCG........................................................................................261.000.00---1.00----------------
.........................................................................................................................................................................................................................GCAACCTCTGCCTCCCCCCAC............211.000.00------1.00-------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGCA........................................................................................231.000.001.00-------------------
................................................................................................................................................CTTTCTTTTTTTTTTGGTCC......................................................................................201.000.001.00-------------------
..................................................................................................................................................TTCTTTTTTTTTTGAGACGGAGGAC...............................................................................251.000.001.00-------------------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTTTTATTG.......................................................................................261.000.00----1.00---------------
..........................................................................................................................................................................................CTGGAGTGCAGTGGTGTGATCTCACCCA....................................281.000.001.00-------------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTTATTT.......................................................................................271.000.00----1.00---------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGGGG.......................................................................................241.000.00-1.00------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGCAGG......................................................................................251.000.00-1.00------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTAATG.......................................................................................241.000.00----1.00---------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGGTA.......................................................................................241.000.001.00-------------------
................................................................................................................................................................................ATCACCCAGGCTGGAGTGCAGGCAT.................................................251.000.001.00-------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGGGCC......................................................................................251.000.001.00-------------------
.....................................................................................................................................................................................................................CACTGCAACCTCTGCCTCCCCAGATCAAGCA......3111.001.00----------1.00---------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTCGGC........................................................................................231.000.00---------1.00----------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTGTTG..........................................................................................231.000.00--1.00-----------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGAGTGT.....................................................................................261.000.00-1.00------------------
...................TCCGAAGAAATTTGTAAG.....................................................................................................................................................................................................................181.000.00--------1.00-----------
.................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGGC................................................................................251.000.001.00-------------------
..............................................................................................................................................TTCTTTCTTTTTTTTTTGAGACGGAGTCTCCC............................................................................321.000.001.00-------------------
.....................................................................................................................................................................................................................CACTGCAACCTCTGCCTCCCCAGCC............251.000.00------1.00-------------
....................................................................................................................................................................................................................TCACTGCAACCTCTGCCTCCCCAAA.............251.000.00--------------1.00-----
.................................................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCCCCGT.............281.000.001.00-------------------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTTTTAATG.......................................................................................261.000.00----1.00---------------
..................................................................................................................................................TTCTTTTTTTTTTGAGACGGCGGC................................................................................241.000.001.00-------------------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTTTTCTTG.......................................................................................261.000.00---1.00----------------
.....................................................................................................................................................TTTTTTTTTTGAGACGGAGTCTCGCGGTG........................................................................291.000.00-1.00------------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTATTG...........................................................................................231.000.00-----1.00--------------
..............................................................................................................................................................................................AGTGCAGTGGTGTGATCTCAGCTCAGCGC...............................291.000.001.00-------------------
..............TTACCTCCGAAGAAATTTGTTCTCCTCTCAGC............................................................................................................................................................................................................3211.001.00------------------1.00-
................................................................................................................................................................................ATCACCCAGGCTGGAGTGCAGCGC..................................................241.000.00-1.00------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGAGACT.....................................................................................261.000.001.00-------------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTCCAG........................................................................................261.000.00--1.00-----------------
.................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGG.................................................................................241.000.00-1.00------------------
.......................................................................................................................................AATAATTTTCTTTCTTTTTTTTTTG..........................................................................................2511.001.00---1.00----------------
............................................................................................................................................................TTTGAGACGGAGTCTCGCGCCG........................................................................221.000.001.00-------------------
................................................................................................................................................................................ATCACCCAGGCTGGAGTGCAGCGTG.................................................251.000.001.00-------------------
................................................................................................................................................................................ATCACCCAGGCTGGAGTGCACGGA..................................................241.000.00-------1.00------------
..........................................................................................................................................AATTTTCTTTCTTTTTTTTTCACG........................................................................................241.000.00-----1.00--------------
............................................................................................................................................TTTTCTTTCTTTTTTTTTTGGGC.......................................................................................231.000.00-1.00------------------
............................................GCACAGGTGTGTACGTCGGT..........................................................................................................................................................................................201.000.00-----------------1.00--
..........................................................................................................................................................................................CTGGAGTGCAGTGGTGTGATCTCAGCTCAGCG................................321.000.00--------1.00-----------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTTATTA.......................................................................................271.000.00----1.00---------------
.................................................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCCCTGGG............291.000.00-1.00------------------
............................................................................................................................................TTTTCTTTCTTTTTTTTTTGGCTT......................................................................................241.000.001.00-------------------
..........................................................................................................................................AATTTTCTTTCTTTTTTTTTTACT........................................................................................241.000.00--1.00-----------------
.............................................................................................................AGTTCTCTGAAGTAGTGGCT.........................................................................................................................2011.001.00------------1.00-------
..............................................................................................................................................TTCTTTCTTTTTTTTTTGGCG.......................................................................................211.000.001.00-------------------
................................................................................................................................................................................ATCACCCAGGCTGGAGTGCAGTGGAGAC..............................................281.000.00-1.00------------------
..........................................................................................................................................AATTTTCTTTCTTTTTTTTTGTA.........................................................................................231.000.00-1.00------------------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTTTTAT.........................................................................................241.000.00--1.00-----------------
..............................................................................................................................................................................TCATCACCCAGGCTGGAGTGCAGTC...................................................251.000.001.00-------------------
...............................................................................................................................................TCTTTCTTTTTTTTTTGGCG.......................................................................................201.000.001.00-------------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTCCG.........................................................................................221.000.00-----1.00--------------
............................................................................................................................................TTTTCTTTCTTTTTTTTTTGCATG......................................................................................241.000.001.00-------------------
...................................................................................................................................................TCTTTTTTTTTTGAGACGGAGGACG..............................................................................251.000.001.00-------------------
...........................................................................................................................................................TTTTGAGACGGAGTCTCGCGCA.........................................................................221.000.00-1.00------------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTGG...........................................................................................231.000.00----1.00---------------
.................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGGCG...............................................................................261.000.00--1.00-----------------
............................................................................................................................................................................................................................ACCTCTGCCTCCCCACG.............171.000.00----------------1.00---
..CAGCAGCACATGTTACCTCCGAAGA...............................................................................................................................................................................................................................2511.001.00---------------1.00----
...............................................................................................................................................TCTTTCTTTTTTTTTTGGGC.......................................................................................201.000.001.00-------------------
..........................................................................................................................................AATTTTCTTTCTTTTTTTTTTGAGACGGAGTC................................................................................3220.500.500.50-------------------
.........................................................................................................................................TAATTTTCTTTCTTTTTTTTTTG..........................................................................................2350.400.40--0.20-0.20---------------
........................................................................................................................................ATAATTTTCTTTCTTTTTTTTTTG..........................................................................................2430.330.33---0.33----------------
...........................................................................................................................................ATTTTCTTTCTTTTTTTTTTGAGACGG....................................................................................2790.110.11-0.11------------------

Antisense strand
TACAGCAGCACATGTTACCTCCGAAGAAATTTGTTCTCCTCTCAGCACAGGTGTGTACGTATTCTGTTATGGTAGTGACAAAAATAAGCGATGTATAATATTTTTGTCAAGTTCTCTGAAGTAGTGGCTTAATTGAATAATTTTCTTTCTTTTTTTTTTGAGACGGAGTCTCGCTCATCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCTGCCTCCCCAGATCAAGCAATTCTC
..............................................................................................................................................((((.((((........)))).))))...((((...(((((.....)).))).))))...................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
......................................................................................................................................................................................................GGTGTGATCTCAGCTCACTGCAAGCGA......................... 274.000.00-4.00------------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATGAGC........................................ 263.000.001.002.00------------------
......................................................................................................................................................................................................GGTGTGATCTCAGCTCACTGTAA............................. 232.000.00-------2.00------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGGCG........................................... 232.000.002.00-------------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATCTGGCG...................................... 282.000.001.001.00------------------
..........................................................................................................................AGTGGCTTAATTGAATACCTA........................................................................................................... 211.000.00-----------1.00--------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGGCC........................................... 231.000.001.00-------------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGGAGC.......................................... 241.000.00-1.00------------------
.................................................................................................................................................................GACGGAGTCTCGCTCACGCA..................................................................... 201.000.00-1.00------------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATGGCG........................................ 261.000.001.00-------------------
.................................................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCG................. 241.000.00-1.00------------------
........................................................................................................................................................................................................TGTGATCTCAGCTCACTGCAACCTCTTTCA.................... 301.000.001.00-------------------
.......................................................................................................................................................................................................GTGTGATCTCAGCTCACTGCAACCTCTGCTCA................... 321.000.00-------------1.00------
.................................................................................................................................................TTTCTTTTTTTTTTGAGACGGAGTAAC.............................................................................. 271.000.00------1.00-------------
.........................................................................................................................................................................................GCTGGAGTGCAGTGGTGTGATCTGGG....................................... 261.000.001.00-------------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATGACG........................................ 261.000.00-1.00------------------
........................................................................................................................................................................CCTGGGTGATGAGCGAGA................................................................ 1870.140.14-------------------0.14