ID: uc003jkt.1_intron_15_0_chr5_37324210_r.3p
GENE: NUP155(19)
chr5:37324160-37324409-


(4)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(13)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGTATTTTATTGTATGTTAGTTATGCATCAGTGTTACTGGCAGGAGAGGAAGTGTGTAGGTATACTTTATTCGGATCAACAGGTGTGAATTGATACAAGAAATAACTATAGAGATACTCATTTCAAAATTAAAATTGTTTATATTATAGCTATACAGAGGGTGTGTTTTTAAACTTTTGAAAAATCTTTCATTTTTACAGATTGAAAGTAGTGTTCCCTGCCAACTGCTAGAGTCAGTGCTACAAGAACT
..................................................((((((...((((.....(((((.(((....))).)))))..))))..............(((((....)))))...............)))))).........................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...................................................GTGTGTAGGTATACTTTTT....................................................................................................................................................................................19122.0010.005.00-4.00--1.002.001.00-2.001.001.002.00----1.00----1.00-1.00-------
...................................................GTGTGTAGGTATACTTTT.....................................................................................................................................................................................18119.0010.005.00-1.001.002.001.002.003.00-1.001.001.00---1.00----------------
...................................................GTGTGTAGGTATACTTT......................................................................................................................................................................................17110.0010.00---4.003.001.00----------1.00-1.00-------------
.............................................................................................................................................................................................................AAGTAGTGTTCCCTGCCAACTGCTAGAGTC...............3014.004.00-4.00------------------------------
.....................................................................................................................................................................................................................................AGAGTCAGTGCTACAAGA...1812.002.00--------2.00-----------------------
...................................................GTGTGTAGGTATACTTTTA....................................................................................................................................................................................1912.0010.002.00-------------------------------
....................................................................................................................................................................................................................GTTCCCTGCCAACTGCTAGAG.................2112.002.00-----2.00--------------------------
...................................................GTGTGTAGGTATACTTTTTA...................................................................................................................................................................................2011.0010.001.00-------------------------------
...........................................................................................................................................................................................................................GCCAACTGCTAGAGTCAGTGCT.........2211.001.00-------------------1.00------------
.....................................................................................................................................................................................................................................AGAGTCAGTGCTACAAGAACT2111.001.00-------------------------1.00------
...................................................GTGTGTAGGTATACTTTA.....................................................................................................................................................................................1811.001.00----------1.00---------------------
..............................................................................................................................AATTAAAATTGTTTATATTTTT......................................................................................................221.000.00---------------------1.00----------
.................................................................................................................................................................................................................AGTGTTCCCTGCCAACTGCTAGAGC................251.000.00-1.00------------------------------
.....................................................................................................................................................................................................................................AGAGTCAGTGCTACAAGAAC.2011.001.00-------------1.00------------------
.............................................................................................................................................................AGGGTGTGTTTTTAAACT...........................................................................1811.001.00-------------1.00------------------
.............................................................................................................................................................................................................AAGTAGTGTTCCCTGCCAACTGCTAG...................2611.001.00-1.00------------------------------
...................................................................................................................................................................................................................................CTAGAGTCAGTGCTACAAGA...2011.001.00--------1.00-----------------------
......................................................................................................................................................................................................................TCCCTGCCAACTGCTAGAGTCAGCGCT.........271.000.00-1.00------------------------------
..............................................................................................................................................................................................................................AACTGCTAGAGTCAGTGCT.........1911.001.00--------------------------1.00-----
..............................................................................................................................................................................................................................AACTGCTAGAGTCAGTGCTACAAG....2411.001.00--------------1.00-----------------
.......................................GCAGGAGAGGAAGTGTG..................................................................................................................................................................................................1740.750.75---------------------------0.250.250.25--
............................................AGAGGAAGTGTGTAGGT.............................................................................................................................................................................................1740.250.25------------------------------0.25-
.......................................................GTAGGTATACTTTAT....................................................................................................................................................................................1560.170.17-------------------------------0.17

Antisense strand
TGTATTTTATTGTATGTTAGTTATGCATCAGTGTTACTGGCAGGAGAGGAAGTGTGTAGGTATACTTTATTCGGATCAACAGGTGTGAATTGATACAAGAAATAACTATAGAGATACTCATTTCAAAATTAAAATTGTTTATATTATAGCTATACAGAGGGTGTGTTTTTAAACTTTTGAAAAATCTTTCATTTTTACAGATTGAAAGTAGTGTTCCCTGCCAACTGCTAGAGTCAGTGCTACAAGAACT
..................................................((((((...((((.....(((((.(((....))).)))))..))))..............(((((....)))))...............)))))).........................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................ATTCGGATCAACAGGTTGT................................................................................................................................................................... 191.000.00--------------------1.00-----------
....................................................................ATTCGGATCAACAGGTGT.................................................................................................................................................................... 181.000.00-----------------------1.00--------