ID: uc003jko.1_intron_1_0_chr5_37108574_r.5p
GENE: C5orf42(3)
chr5:37114862-37115111-


(1)
B-CELL 		(1)
BREAST 		(16)
CELL-LINE 		(5)
CERVIX 		(2)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
CAAAGCAGCAGTAAGAAAGGCTACGCAGTCTCCAGTTACCTTCCAAAAAGGTAAGGGATAAAGAAGATAAAGTTTTTAGACTTAATACTGAATTTTCTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGTCTGGAGTGCAGTGGTGCAATGTCGGCTCACTGTAACCTCCACTCCCGGGTTCAAGTGATTCTCCTGCCTCAGGCTTCCCAGTAGCTGGGATTACAGGTGCCCACCACCGCG
.................................................................................................................(((((((.....)))))))(((((..(((.....)))))).))..............................................................................................
.....................................................................................86......................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334GSM532878(GSM532878)
G691T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029130(GSM416759)
DLD2. (cell line)
..........................................................................................AATTTTCTTTTTTTTTTTTACG..........................................................................................................................................2230.000.0012.00-2.008.004.003.00---1.00-------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTTACG........................................................................................................................................2415.000.006.00--2.004.002.00---1.00-------------------------
..........................................................................................AATTTTCTTTTTTTTTTTACG...........................................................................................................................................2111.000.005.001.00-3.002.00------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTTACT........................................................................................................................................243.000.002.00---1.00------------------------------
..................................................................................................................................TTGCCCAGTCTGGAGTGCAGGGGG................................................................................................242.000.00-2.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTTGGGG.......................................................................................................................................252.000.00-2.00---------------------------------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGAATG......................................................................................................................................252.000.00-1.001.00--------------------------------
................................................................................................................................................................TCGGCTCACTGTAACCTCCA......................................................................2002.002.00--------2.00--------------------------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGGCC.......................................................................................................................................241.000.00-1.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTTGAGCCGG....................................................................................................................................281.000.00--1.00--------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTGGTG.........................................................................................................................................231.000.00--1.00--------------------------------
..................................................GTAAGGGATAAAGAAGATAAAAG.................................................................................................................................................................................231.000.00-----------1.00-----------------------
....................................................................................................................................GCCCAGTCTGGAGTGCAGTGG.................................................................................................2101.001.00---------------1.00-------------------
....................................................................................................................................GCCCAGTCTGGAGTGCAGTCGCG...............................................................................................231.000.00-------------------------------1.00---
..................................................................................................................................TTGCCCAGTCTGGAGTGCAGTGACGA..............................................................................................261.000.00-1.00---------------------------------
.................................................................................................................................................................CGGCTCACTGTAACCTCCAAAA...................................................................221.000.00-----------------------------1.00-----
........................................................................................................................TCTCACTCTGTTGCCCAGTCTCGCC.........................................................................................................251.000.00--1.00--------------------------------
..................................................................................................................................TTGCCCAGTCTGGAGTGCAAGA..................................................................................................221.000.00----------------------------1.00------
..........................................................................................AATTTTCTTTTTTTTTTTTGGC..........................................................................................................................................221.000.00-1.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTCCAA........................................................................................................................................241.000.001.00----------------------------------
.......................................................................................................................................................................ACTGTAACCTCCACTCCCTG...............................................................201.000.00-------1.00---------------------------
.............................................................................................TTTCTTTTTTTTTTTTTTGAGACTTGC..................................................................................................................................271.000.00--1.00--------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTAACG..........................................................................................................................................221.000.00---1.00-------------------------------
................................................................................................................................................................TCGGCTCACTGTAACCTCCTCTG...................................................................231.000.00------------1.00----------------------
..........................................................................................................................................................................................................................................GGTGCCCACCACCGCGGG181.000.00-------------------------1.00---------
.................................................................................................................................GTTGCCCAGTCTGGAGTG.......................................................................................................1801.001.00------1.00----------------------------
.........................................................................................................................................................................................................................CAGTAGCTGGGATTACATAAG............211.000.00--------------------1.00--------------
..........................................................................................AATTTTCTTTTTTTTTTTTATGT.........................................................................................................................................231.000.00--1.00--------------------------------
......................................................................................ACTGAATTTTCTTTTTTTTTTTTTGAG.........................................................................................................................................271.000.00--1.00--------------------------------
.......................................................................................................................................CAGTCTGGAGTGCAGTGTAAC..............................................................................................211.000.00--------------1.00--------------------
........................................................................................TGAATTTTCTTTTTTTTTCCC.............................................................................................................................................211.000.00-1.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTACA..........................................................................................................................................221.000.00-----1.00-----------------------------
.......................................................................................CTGAATTTTCTTTTTTTCAG...............................................................................................................................................201.000.00---------1.00-------------------------
......................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCGTTT.......................................291.000.00--------------------------1.00--------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGAGCTTG....................................................................................................................................271.000.00---1.00-------------------------------
................................................................................................CTTTTTTTTTTTTTTGAGACAGAGTCATG.............................................................................................................................291.000.001.00----------------------------------
.....................................................................................................................GAGTCTCACTCTGTTGCCCAGTAAGA...........................................................................................................261.000.00------------------1.00----------------
....................................................................................................................................................................................................ATTCTCCTGCCTCAGGCTTCCCAGTAGCCGGG......................321.000.00--1.00--------------------------------
..................................................GTAAGGGATAAAGAAGATAAAG..................................................................................................................................................................................2211.001.00-----------1.00-----------------------
.....................................................AGGGATAAAGAAGATTTT...................................................................................................................................................................................181.000.00---------------------1.00-------------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGCCTC......................................................................................................................................251.000.00--1.00--------------------------------
......................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCAG.........................................271.000.00----------1.00------------------------
..................................................................................................................................TTGCCCAGTCTGGAGTGCAGTGCG................................................................................................241.000.00-1.00---------------------------------
...........................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA......................................251.000.00---------------------------1.00-------
..........................................................................................AATTTTCTTTTTTTTTTTTTTGAGGCTC....................................................................................................................................281.000.00-1.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTTGATG.......................................................................................................................................251.000.00-1.00---------------------------------
...................................................................................................................................TGCCCAGTCTGGAGTGCATGGC.................................................................................................221.000.00-1.00---------------------------------
.......................................................................................................................................CAGTCTGGAGTGCAGGGCA................................................................................................191.000.00------------------------1.00----------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGGGC.......................................................................................................................................241.000.00-1.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTGCAG.........................................................................................................................................231.000.00-1.00---------------------------------
..................................................GTAAGGGATAAAGAAGATAA....................................................................................................................................................................................2011.001.00------------------------------1.00----
..........................................................................................AATTTTCTTTTTTTTTTTTGTTT.........................................................................................................................................231.000.00-1.00---------------------------------
..................................................................................................................................TTGCCCAGTCTGGAGTGCAGGTGC................................................................................................241.000.00-1.00---------------------------------
............................................................................................TTTTCTTTTTTTTTTTTTTGAGACAGAGCCG...............................................................................................................................311.000.00-1.00---------------------------------
................................................................................................................................................................TCGGCTCACTGTAACCTCCACT....................................................................2201.001.00------1.00----------------------------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGTGTC......................................................................................................................................251.000.00-1.00---------------------------------
.............................................................................................TTTCTTTTTTTTTTTTTTGAGAGGCT...................................................................................................................................261.000.00--1.00--------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTGGAG.........................................................................................................................................231.000.00-1.00---------------------------------
..........................................................................................AATTTTCTTTTTTTTTTTTTCAAG........................................................................................................................................241.000.00-----1.00-----------------------------
...........................................................................................ATTTTCTTTTTTTTTTTTTTGGCAG......................................................................................................................................251.000.00--1.00--------------------------------
..........................................................................................................................................................................................................................AGTAGCTGGGATTACAGGTGCCCACCACCTGC321.000.00--1.00--------------------------------
..............................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA......................................221.000.00-----------------1.00-----------------
..........................................................................................................................................TCTGGAGTGCAGTGGT................................................................................................1601.001.00--------1.00--------------------------
.....CAGCAGTAAGAAAGGC.....................................................................................................................................................................................................................................1660.670.67------------0.17--------------------0.50-
........................................................................................TGAATTTTCTTTTTTTTTTTTTTG..........................................................................................................................................2440.250.250.25----------------------------------
...........................................................................................................................................................CAATGTCGGCTCACTGTAACCTCC.......................................................................2450.200.20----------------------------------0.20

Antisense strand
CAAAGCAGCAGTAAGAAAGGCTACGCAGTCTCCAGTTACCTTCCAAAAAGGTAAGGGATAAAGAAGATAAAGTTTTTAGACTTAATACTGAATTTTCTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGTCTGGAGTGCAGTGGTGCAATGTCGGCTCACTGTAACCTCCACTCCCGGGTTCAAGTGATTCTCCTGCCTCAGGCTTCCCAGTAGCTGGGATTACAGGTGCCCACCACCGCG
.................................................................................................................(((((((.....)))))))(((((..(((.....)))))).))..............................................................................................
.....................................................................................86......................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343334GSM532878(GSM532878)
G691T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029130(GSM416759)
DLD2. (cell line)
...AGCAGCAGTAAGAAAGAG..................................................................................................................................................................................................................................... 184.000.00-------2.00--1.00--1.00---------------------
................................................................................................................................TGTTGCCCAGTCTGGAGTGCAGTAGCC............................................................................................... 272.000.00-2.00---------------------------------
.............................................................................................................................CACTCCAGACTGGGCAACAGAG....................................................................................................... 2202.002.00------2.00----------------------------
................................................................................................................................................................TCGGCTCACTGTAACCTCCACTCCCGGA.............................................................. 281.000.00-------------------1.00---------------
...............................................................................................................................................................GTCGGCTCACTGTAACC.......................................................................... 171.000.00----------1.00------------------------
........................................................................................................................TCTCACTCTGTTGCCCAGTCTGGAGTAT...................................................................................................... 281.000.00----------------------1.00------------
.........................................................................................................................................GTCTGGAGTGCAGTGGTGCAATCGTC....................................................................................... 261.000.00--1.00--------------------------------
............................................................................................................................................................................................................GCCTCAGGCTTCCCAGGGAA.......................... 201.000.00-----------------------1.00-----------
.............................................................................................................................CTCTGTTGCCCAGTCTGGAAGTG...................................................................................................... 231.000.00--1.00--------------------------------
...AGCAGCAGTAAGAAAGAA..................................................................................................................................................................................................................................... 181.000.00-------1.00---------------------------
...................................................................................................................................TGCCCAGTCTGGAGTGCC..................................................................................................... 181.000.00-1.00---------------------------------
.......................................................GGATAAAGAAGATAAAGTT................................................................................................................................................................................ 191.000.00---------1.00-------------------------
....................................................................................................................................GCACTCCAGACTGGGC...................................................................................................... 1601.001.00------1.00----------------------------
......................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTT............................................. 231.000.00------1.00----------------------------
..................................................................................................................................TTGCCCAGTCTGGAGTGCAGTGGTGGAGC........................................................................................... 291.000.00--1.00--------------------------------
..........................................................................................................................................................GCAATGTCGGCTCACCGG.............................................................................. 181.000.00----------------1.00------------------
.....................................................................................................................GAGTCTCACTCTGTTGCCCAGTCTGGAGTGA...................................................................................................... 311.000.00-1.00---------------------------------
.............................................................................................................................CTCTGTTGCCCAGTCTGGAAG........................................................................................................ 211.000.00--------1.00--------------------------
...................................................................................................................................................................................GAGAATCACTTGAACCCGGGAGT................................................ 2301.001.00--------1.00--------------------------
...................................................................................................................CAGAGTCTCACTCTGTTGCCCAGTCTG............................................................................................................ 271.000.00-1.00---------------------------------
..............................TTTGGAAGGTAACTGGA........................................................................................................................................................................................................... 1711.001.00--------------------------------1.00--
...AGCAGCAGTAAGAAAATC..................................................................................................................................................................................................................................... 181.000.00-------1.00---------------------------