ID: uc003jkl.3_intron_20_0_chr5_37010328_f.3p
GENE: (21)
chr5:37014585-37014834+


(2)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(19)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(21)
SKIN 		(1)
XRN.ip

Sense strand
TCTGTATTTTTATTTGTTTCTATAAAGTTTTAAAATATGCTTAGTGTGCTAATTTTGGCTTCTCTTATTATATATAATGTAATAGTTTAAGCATTTTAGTATTTAAATATATTACCCCTCTTCAGTAATAACATGACAATAGCAACAGGGCTAACTTATTATTTCTTGTATCTTTATAAACTCACTTTTTTTCATTCTAGATTGACCAGGATGTTGTCATTACTAACTCTTATGAAACAGCTATGCGAAC
....................................................................................................................................((((...((((......))))............(((((....)))))............)))).......................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
................................................................................................................................................................................TAAACTCACTTTTTTTCATTCTAGA.................................................25128.0028.007.00-1.00-2.001.00-1.00-------2.002.002.00--1.00----1.00--1.00-1.00--1.00----1.00-----1.00------1.00--1.001.00----
................................................................................................................................................................................TAAACTCACTTTTTTTCATTCTAGAA................................................26113.0028.004.00---1.00---------------------1.00----1.00---1.00----1.00-1.00--1.00----1.00-1.00-------
................................................................................................................................................................................TAAACTCACTTTTTTTCATTCTAG..................................................24110.0010.00--2.00-1.00-1.00------2.002.00----------------------------------1.00------1.00---
...............................................................................................................................................................................ATAAACTCACTTTTTTTCATTCTAGA.................................................2618.008.002.00----1.00------1.00-------1.00---1.00--1.00-----------1.00--------------------
...............................................................................................................................................................................ATAAACTCACTTTTTTTCATTCTAG..................................................2513.003.00------1.00-------------------------1.00--------------------1.00------
...............................................................................................................................................................................................................AGGATGTTGTCATTACTAACTCTTAT.................2613.003.00-3.00----------------------------------------------------------
...................................................................................................................................................................................ACTCACTTTTTTTCATTCTAGA.................................................2212.002.00-------2.00----------------------------------------------------
.........................................................................................................................................................................ATCTTTATAAACTCACTTTTTTTCATTCCAG..................................................312.000.00--------1.00-1.00-------------------------------------------------
..................................................................................................................................................................................AACTCACTTTTTTTCCTCG.....................................................192.000.00---------2.00--------------------------------------------------
.........................................................................................................................................................................ATCTTTATAAACTCACTTTTTTTCATTCTAG..................................................3112.002.00-------------------2.00----------------------------------------
.............................................................................................................................................................................................................CCAGGATGTTGTCATTACT..........................1912.002.00-1.00--------------------1.00-------------------------------------
................................................................................................................................................................................TAAACTCACTTTTTTTCATTCTA...................................................2312.002.00---2.00--------------------------------------------------------
...............................................................................................................................................................................ATAAACTCACTTTTTTTCATTCTAGG.................................................2612.003.002.00-----------------------------------------------------------
.............................................................................................................................................................................................................................ACTAACTCTTATGAAACAGCTAT......2312.002.00------------------2.00-----------------------------------------
................................................................................................................................................................................TAAACTCACTTTTTTTCATTCT....................................................2212.002.00---2.00--------------------------------------------------------
...............................................................................................................................................................................................................AGGATGTTGTCATTACTAACTC.....................2211.001.00-1.00----------------------------------------------------------
.......................................................................................................................CTTCAGTAATAACATGACAATAGCAACAGG.....................................................................................................3011.001.00------------1.00-----------------------------------------------
............................................................................................................................................................................................................ACCAGGATGTTGTCATTACTAACTC.....................2511.001.00-------------------------------------------1.00----------------
..............................................................................................................................................................................TATAAACTCACTTTTTTTCATTCTA...................................................2511.001.00--------1.00---------------------------------------------------
............................................................................................................................................................................................................ACCAGGATGTTGTCATTA............................1811.001.00---------------------1.00--------------------------------------
.........................................................................................................................................................................ATCTTTATAAACTCACTTTTTTTCACTAA....................................................291.000.00----------1.00-------------------------------------------------
..........................................................................................................................................................................TCTTTATAAACTCACTTTTTTTCATTCTA...................................................2911.001.00---------1.00--------------------------------------------------
.....................................................................................................................................TGACAATAGCAACAGGG....................................................................................................1711.001.00----------------------------------------------1.00-------------
...............................................................................................................................................................................................................AGGATGTTGTCATTACTAAC.......................2011.001.00------------------------------------------------1.00-----------
...........................................................................................................................................................................................................GACCAGGATGTTGTCATTACTAACT......................2511.001.00-1.00----------------------------------------------------------
..........................................................................................................................................................................TCTTTATAAACTCACTTTTTTTCATTCTAGA.................................................3111.001.00--1.00---------------------------------------------------------
............................................................................................................................................................................TTTATAAACTCACTTTTTTTCATTCTAGA.................................................2911.001.00-----1.00------------------------------------------------------
............................................................................................................................................................................TTTATAAACTCACTTTTTTTCATTCTAG..................................................2811.001.00------1.00-----------------------------------------------------
..................................................................................................................................................................................AACTCACTTTTTTTCATTCTAG..................................................2211.001.00-----------------------1.00------------------------------------
............................................................................................................................................................................................TTTTCATTCTAGATTGACCAGGA.......................................2311.001.00------------------------------------1.00-----------------------
.................................................................................................................................................................................AAACTCACTTTTTTTCATT......................................................1921.001.00-----------------------------------------1.00------------------
...............................................................................................................................................................................ATAAACTCACTTTTTTTCATTC.....................................................2211.001.00-----------------------------1.00------------------------------
................................................................................................................................................................................TAAACTCACTTTTTTTCATTCTAGT.................................................2511.0010.00-----------------------------------------------1.00------------
........................................................................................................................................................................TATCTTTATAAACTCACTTTTTTTCATCCTA...................................................311.000.00--------1.00---------------------------------------------------
...........................................................................................................................AGTAATAACATGACAATAGCAACAGGGCT..................................................................................................2911.001.00----------------------------------1.00-------------------------
...........................................................................................................................................................................CTTTATAAACTCACTTTTTTTCA........................................................2311.001.00-------------------------------------1.00----------------------
................................................................................................................................................................................TAAACTCACTTTTTTTCAT.......................................................1920.500.50---------------------------------------------------------0.50--
..............................................TGCTAATTTTGGCTTC............................................................................................................................................................................................1630.330.33----------0.33-------------------------------------------------
........................................................................................................................................................................................................ATTGACCAGGATGTTG..................................1650.200.20----------------------------------------------------------0.20-
.........................................................................................................................................................................................................TTGACCAGGATGTTGT.................................1660.170.17-----------------------------------------------------------0.17

Antisense strand
TCTGTATTTTTATTTGTTTCTATAAAGTTTTAAAATATGCTTAGTGTGCTAATTTTGGCTTCTCTTATTATATATAATGTAATAGTTTAAGCATTTTAGTATTTAAATATATTACCCCTCTTCAGTAATAACATGACAATAGCAACAGGGCTAACTTATTATTTCTTGTATCTTTATAAACTCACTTTTTTTCATTCTAGATTGACCAGGATGTTGTCATTACTAACTCTTATGAAACAGCTATGCGAAC
....................................................................................................................................((((...((((......))))............(((((....)))))............)))).......................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
................................................................................AATAGTTTAAGCATTCATG....................................................................................................................................................... 191.000.00-----------1.00------------------------------------------------
.........TTATTTGTTTCTATAATATG............................................................................................................................................................................................................................. 201.000.00-----------1.00------------------------------------------------