ID: uc003jkj.3_intron_7_0_chr5_36680692_f.3p
GENE: (8)
chr5:36683766-36684015+


(8)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(3)
LIVER 		(2)
OTHER 		(2)
SKIN 		(4)
UTERUS

Sense strand
CACCACTGCACTCCAGCCTGGGCAACAGAGTGAGATACTGTTTCAAAAAAAAAAAAAATCTCATTTACGTTTTTTCTGAAGCGCGTCCTCTTGTGTTACATGGCAAGTCAGGCATCGGCACCGTGCGTATTTTGCAGCGTATATGCTCTACGTGGGGAGCTTTGTAAAAGTGTTTTCTGTTCTGGTACTTCTGTTAACAGCATCACAGCCACAGCTGCCAGTATTGGGGCAGCTGGAATTCCTCAGGCGG
.............................................................................(((((((.....(((((........)))))....(((..(((.((.((((((....(((.......)))..)))))).)).))).)))....))))))).....(((..((....))...)))..................................................
........................................................................73.............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189786SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040006(GSM532891)
G601N. (cervix)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR343334SRR343335
.............................................................................GAAGCGCGTCCTCTTATTT..........................................................................................................................................................1944.000.008.00--5.004.00-3.003.001.003.002.00------1.002.00-1.00-1.001.00-1.00-1.00-1.00-1.00--1.00-1.00--1.00-1.00-1.00----
.............................................................................GAAGCGCGTCCTCTTCTTT..........................................................................................................................................................198.000.005.00---1.00---2.00---------------------------------------
.............................................................................GAAGCGCGTCCTCTTATTC..........................................................................................................................................................193.000.00------2.00-------------------------------1.00---------
.............................................................................GAAGCGCGTCCTCTTATT...........................................................................................................................................................183.000.00---------1.001.00---------1.00---------------------------
.............................................................................GAAGCGCGTCCTCTTTTTT..........................................................................................................................................................192.000.00--------------------------------1.001.00--------------
................................................................................................................................................................................................................................TGGGGCAGCTGGAATTCCTC......2012.002.00---------------2.00--------------------------------
...........................................................................................................................................................................GTTTTCTGTTCTGGTACTTCTGT........................................................2312.002.00-------------2.00----------------------------------
.............................................................................GAAGCGCGTCCTCTTAT............................................................................................................................................................172.000.00--------1.00-----------------1.00---------------------
.......................................................................TTTTCTGAAGCGCGTCCTCTTGTG...........................................................................................................................................................2411.001.00--1.00---------------------------------------------
........................................................................TTTCTGAAGCGCGTCCTCTTG.............................................................................................................................................................2111.001.00--1.00---------------------------------------------
...........................................................................................................................................................................................................................AGTATTGGGGCAGCTGGAATTCC........2311.001.00-------------------1.00----------------------------
.....................................................................................................................................................................................................CAGCATCACAGCCACAGCTGCCAGTATTGGGGC....................3311.001.00-1.00----------------------------------------------
................................................................................................................................................................................................................................TGGGGCAGCTGGAATTCCTCAGG...2311.001.00----------------1.00-------------------------------
.........................................................ATCTCATTTACGTTTTTTTT.............................................................................................................................................................................201.000.00--------------------------------------------1.00---
............................................................................................................................................................................................................................GTATTGGGGCAGCTGGAATTCCTCAGGCGG3011.001.00-1.00----------------------------------------------
.................................................................................................................................................................................................................................GGGGCAGCTGGAATTCCTCAGGC..2311.001.00-------------------1.00----------------------------
...............................................................................................................................................................................................................................TTGGGGCAGCTGGAATTCCTCAGGCGG2711.001.00-1.00----------------------------------------------
...............................................................................................................................................................................................................................TTGGGGCAGCTGGAATTCCTCAGGC..2511.001.00---------------------1.00--------------------------
...........................................................................................................................................................................................................................AGTATTGGGGCAGCTGGAATTC.........2211.001.00-1.00----------------------------------------------
.............................................................................................................................................................................................................................TATTGGGGCAGCTGGAATTCCTCAGGCGG2911.001.00-1.00----------------------------------------------
................................................................................................................................................................................................................................TGGGGCAGCTGGAATTCC........1811.001.00-1.00----------------------------------------------
...............................................................................................................................................................................................................................TTGGGGCAGCTGGAATTCCTCAGGCG.2611.001.00-1.00----------------------------------------------
................................................................................................................................................................................................................................TGGGGCAGCTGGAATTCCT.......1911.001.00-1.00----------------------------------------------
.............................................................................GAAGCGCGTCCTCTTATCT..........................................................................................................................................................191.000.00-------1.00----------------------------------------
.........................................................................................................................................................GGGGAGCTTTGTAAAACT...............................................................................181.000.00----------------------------1.00-------------------
.............................................................................GAAGCGCGTCCTCTTCTTG..........................................................................................................................................................191.000.001.00-----------------------------------------------
.............................................................................GAAGCGCGTCCTCTTACTC..........................................................................................................................................................191.000.00------------------------------1.00-----------------
...................................................................................................................................................................................................................................GGCAGCTGGAATTCCTCAGGCGG2311.001.00----------------------------------------1.00-------
.............................................................................GAAGCGCGTCCTCTTATTG..........................................................................................................................................................191.000.00-----------------1.00------------------------------
.............................................................................GAAGCGCGTCCTCTTACTT..........................................................................................................................................................191.000.00-------1.00----------------------------------------
...................................................................................................................................................CTACGTGGGGAGCTTTGTAAAAGTGTTTT..........................................................................2911.001.00-----------------------------------1.00------------
............................................................................................................................................................................................................................GTATTGGGGCAGCTGGAATTCCTCAGG...2711.001.00-1.00----------------------------------------------
.............................................................................GAAGCGCGTCCTCTTGTTT..........................................................................................................................................................191.000.00---------------------------------------------1.00--
.............................................................................GAAGCGCGTCCTCTTATTA..........................................................................................................................................................191.000.00--------1.00---------------------------------------
..................TGGGCAACAGAGTGAGATAGAC..................................................................................................................................................................................................................221.000.00--1.00---------------------------------------------
............................................................................................................................................................................................................................GTATTGGGGCAGCTGG..............1620.500.50-0.50----------------------------------------------
................................................................................................................................................................................................................................TGGGGCAGCTGGAATT..........1640.250.25---------------------0.25--------------------------

Antisense strand
CACCACTGCACTCCAGCCTGGGCAACAGAGTGAGATACTGTTTCAAAAAAAAAAAAAATCTCATTTACGTTTTTTCTGAAGCGCGTCCTCTTGTGTTACATGGCAAGTCAGGCATCGGCACCGTGCGTATTTTGCAGCGTATATGCTCTACGTGGGGAGCTTTGTAAAAGTGTTTTCTGTTCTGGTACTTCTGTTAACAGCATCACAGCCACAGCTGCCAGTATTGGGGCAGCTGGAATTCCTCAGGCGG
.............................................................................(((((((.....(((((........)))))....(((..(((.((.((((((....(((.......)))..)))))).)).))).)))....))))))).....(((..((....))...)))..................................................
........................................................................73.............................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189786SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037938(GSM510476)
293Red. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040006(GSM532891)
G601N. (cervix)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR343334SRR343335
..........CTCCAGCCTGGGCAACAGAGTGAGATCGCC.................................................................................................................................................................................................................. 302.000.00-----2.00------------------------------------------
.............CAGCCTGGGCAACAGAGTGAGATAAAA.................................................................................................................................................................................................................. 272.000.00------------2.00-----------------------------------
.......................................GTTTCAAAAAAAAAAAAAATTTGC........................................................................................................................................................................................... 241.000.00--1.00---------------------------------------------
.......................................GTTTCAAAAAAAAAAAAAATCGGGC.......................................................................................................................................................................................... 251.000.00-----1.00------------------------------------------
......................................................................................................GCAAGTCAGGCATCGGCTT................................................................................................................................. 191.000.00-------------------------------------1.00----------
.............................................AAAAAAAAAAAAATCTCATCGAG...................................................................................................................................................................................... 231.000.00-----1.00------------------------------------------
............CCAGCCTGGGCAACAGAGTGAGATGCC................................................................................................................................................................................................................... 271.000.00-----------1.00------------------------------------
.................CTGGGCAACAGAGTGAGATCCCA.................................................................................................................................................................................................................. 231.000.00--------------1.00---------------------------------
..............................................AAAAAAAAAAAATCTCATGGAG...................................................................................................................................................................................... 221.000.00--1.00---------------------------------------------
................CCTGGGCAACAGAGTGAGATATC................................................................................................................................................................................................................... 231.000.00--------------1.00---------------------------------
................................................................................................................................................................................................................CCACAGCTGCCAGTATG......................... 171.000.00----------------1.00-------------------------------
.................CTGGGCAACAGAGTGAGATAC.................................................................................................................................................................................................................... 211.000.00------------------------1.00-----------------------
.........................................TTCAAAAAAAAAAAAAATCTGG........................................................................................................................................................................................... 221.000.00-----1.00------------------------------------------
..........................................TCAAAAAAAAAAAAAATCTCATTGAGG..................................................................................................................................................................................... 271.000.00--1.00---------------------------------------------
..............................................AAAAAAAAAAAATCTCATCTGG...................................................................................................................................................................................... 221.000.00--1.00---------------------------------------------
...............GCCTGGGCAACAGAGTGAGATCAA................................................................................................................................................................................................................... 241.000.00-----------1.00------------------------------------
...............GCCTGGGCAACAGAGTGAGATCAAA.................................................................................................................................................................................................................. 251.000.00-----------1.00------------------------------------
.........................................TTCAAAAAAAAAAAAAATGAGG........................................................................................................................................................................................... 221.000.00------------------------------------------1.00-----
...............................................................................................................................................................GAAAACACTTTTACAAAG......................................................................... 1830.330.33----------------------------------------------0.33-
...............................................................................................................................................................AAAACACTTTTACAAAG.......................................................................... 1790.220.22----------------------------------------------0.110.11