ID: uc003jia.1_intron_4_0_chr5_33561285_r.3p
GENE: ADAMTS12(19)
chr5:33561235-33561484-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
BRAIN 		(8)
BREAST 		(6)
CELL-LINE 		(9)
CERVIX 		(2)
HEART 		(1)
OTHER 		(1)
SKIN

Sense strand
ACTGAGCATCCCCGGGTCCTACCCCAAGAGATTCAGATTAATTTGTGTGAGTGGGGTGCCCCAAGTGTTGGTAATTTTTAAAAAGCTCTGTGGGCAATGTTAGCAAACGGGACTGAGAACTGACTCCAGGATCCCAGTGATGGGGCATGTGTGAGAAGGTGACACTCAGCCTCTGTCATCTCTCTCCTTCCCTGCTACAGTGCTCCACCACATGTGGCCTGGGGGCCTACTGGAGAAGGGTGGAGTGCAG
......................................................................................................................(((..(((((...(((((....)))))....)).)))..)))..........................................................................................
............................................................................................................109......................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR343336SRR343337SRR189784SRR189785SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR189782SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040006(GSM532891)
G601N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577744(Rovira)
total RNA. (breast)
.................................................................................................................TGAGAACTGACTCCATG........................................................................................................................17254.000.0084.0072.0040.0033.0018.007.00---------------------------------
.................................................................................................................TGAGAACTGACTCCATGA.......................................................................................................................185.000.004.001.00-------------------------------------
.......................................................................................................................................AGTGATGGGGCATGTGTGAGAAGGTG.........................................................................................2614.004.00------4.00--------------------------------
.................................................................................................................TGAGAACTGACTCCAATAG......................................................................................................................192.000.00----2.00----------------------------------
............................................................................................................................................TGGGGCATGTGTGAGAAGGTGA........................................................................................2212.002.00-------------2.00-------------------------
.................................................................................................................TGAGAACTGACTCCATAA.......................................................................................................................182.000.00----2.00----------------------------------
.................................................................................................................TGAGAACTGACTCCATAC.......................................................................................................................181.000.00-----------1.00---------------------------
...........................................................................................................................................ATGGGGCATGTGTGAGAAGGTGA........................................................................................2311.001.00-------------------1.00-------------------
......................................TAATTTGTGTGAGTGGTGGA................................................................................................................................................................................................201.000.00--------------------------1.00------------
.......................................AATTTGTGTGAGTGGGGGAC...............................................................................................................................................................................................201.000.00---------------------------------1.00-----
.................................................................................................................TGAGAACTGACTCCATAGA......................................................................................................................191.000.00-1.00-------------------------------------
.CTGAGCATCCCCGGGGA........................................................................................................................................................................................................................................171.000.00-------------------------1.00-------------
................................................................................AAAAGCTCTGTGGGCGAAG.......................................................................................................................................................191.000.00----------------------1.00----------------
.................................................................................................................TGAGAACTGACTCCATGT.......................................................................................................................181.000.001.00--------------------------------------
..........................................................................................................................................................................CTCTGTCATCTCTCTCCCG.............................................................191.000.00-----------------------------1.00---------
.................................................................................................................TGAGAACTGACTCCACAG.......................................................................................................................181.000.00-----------1.00---------------------------
...................................................................................................................................................................................................TACAGTGCTCCACCACTG.....................................181.000.00----------------------------------1.00----
.................................................................................................................TGAGAACTGACTCCATTG.......................................................................................................................181.000.00----1.00----------------------------------
.................................................................................................................TGAGAACTGACTCCACG........................................................................................................................171.000.00----1.00----------------------------------
.................................................................................................................................................................................................GCTACAGTGCTCCACTC........................................171.000.00--------1.00------------------------------
........................................................................................................AAACGGGACTGAGAAC..................................................................................................................................1620.500.50-----------------------------------0.50---
.................................................................................................................TGAGAACTGACTCCAGG........................................................................................................................1730.330.33----0.33----------------------------------
.....................................................................................................................................................................................CTCTCCTTCCCTGCTAC....................................................1750.200.20-------------------------------------0.20-
......................................................................................................................................................................................................................................TGGAGAAGGGTGGAGTG...1760.170.17--------------------------------------0.17

Antisense strand
ACTGAGCATCCCCGGGTCCTACCCCAAGAGATTCAGATTAATTTGTGTGAGTGGGGTGCCCCAAGTGTTGGTAATTTTTAAAAAGCTCTGTGGGCAATGTTAGCAAACGGGACTGAGAACTGACTCCAGGATCCCAGTGATGGGGCATGTGTGAGAAGGTGACACTCAGCCTCTGTCATCTCTCTCCTTCCCTGCTACAGTGCTCCACCACATGTGGCCTGGGGGCCTACTGGAGAAGGGTGGAGTGCAG
......................................................................................................................(((..(((((...(((((....)))))....)).)))..)))..........................................................................................
............................................................................................................109......................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR343336SRR343337SRR189784SRR189785SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040024(GSM532909)
G613N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR189782SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040006(GSM532891)
G601N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577744(Rovira)
total RNA. (breast)
.....................................................................................................................................................................................................CAGTGCTCCACCACAGAGC.................................. 192.000.00-------1.00-1.00-----------------------------
....................................................................................................................................................................................................ACAGTGCTCCACCACATGCT.................................. 202.000.00-------1.00----1.00--------------------------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACAG..................................... 202.000.00----------1.00---1.00------------------------
....................................................................................................................................................................................................ACAGTGCTCCACCACACTGT.................................. 201.000.00----------1.00----------------------------
.....................................................................................................................................................................................................CAGTGCTCCACCACAGATG.................................. 191.000.00-------1.00-------------------------------
.....................................................................................................................................................................TCAGCCTCTGTCATCTCT................................................................... 181.000.00---------------1.00-----------------------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACATCT................................... 221.000.00--------------------------------1.00------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACAGCT................................... 221.000.00----------------------------1.00----------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACAT..................................... 201.000.00---------------------------1.00-----------
...................................................................................................................................................................................................TACAGTGCTCCACCACAC..................................... 181.000.00-------------------------------1.00-------
..................................................................................................................................................................................................CTACAGTGCTCCACCACATTC................................... 211.000.00------------------1.00--------------------
...................................................................................................................................................................................................TACAGTGCTCCACCACACC.................................... 191.000.00------------------------1.00--------------
................................................GAGTGGGGTGCCCCAGCGG....................................................................................................................................................................................... 191.000.00----------------1.00----------------------
....................................................................................................................................................................................................ACAGTGCTCCACCACAGG.................................... 181.000.00---------------------1.00-----------------
...................................................................................................................................................................................................TACAGTGCTCCACCACATT.................................... 191.000.00---------------1.00-----------------------
..................................................................................................................................................................................................CTACAGTGCTCCACCACATGTA.................................. 221.000.00------------------------------1.00--------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACATC.................................... 211.000.00--------1.00------------------------------
.....................................................................................................................................CCTTCTCACACATGCCCCATCACTGG........................................................................................... 2611.001.00-----------------1.00---------------------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACATG.................................... 211.000.00----------------1.00----------------------
...................................................................................................................................................................................................TACAGTGCTCCACCACAACTG.................................. 211.000.00--------------1.00------------------------
................................................GAGTGGGGTGCCCCAGCG........................................................................................................................................................................................ 181.000.00--------------------1.00------------------
...................................................................................................................................................................................................TACAGTGCTCCACCACATGGC.................................. 211.000.00-----------------------1.00---------------
.........................................................................................................................GACTCCAGGATCCCACACC.............................................................................................................. 191.000.00---------1.00-----------------------------
....................................................................................................................................................................................................ACAGTGCTCCACCACACGCT.................................. 201.000.00------------1.00--------------------------
....................................................................................................................................................................................................ACAGTGCTCCACCACAGGCT.................................. 201.000.00---------1.00-----------------------------
.................................................................................................................................................................................................GCTACAGTGCTCCACCACATCC................................... 221.000.00--------1.00------------------------------
.................................................................................................................................................................................................TGTGGTGGAGCACTGTAGC...................................... 1911.001.00-------1.00-------------------------------
.....................................................................................................................................................................................................................................CACTCCACCCTTCTCCAG... 1830.330.33------------------------------------0.33--