ID: uc003jhs.2_intron_1_0_chr5_32588691_f.3p
GENE: SUB1(2)
chr5:32591469-32591718+


(1)
B-CELL 		(5)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
XRN.ip

Sense strand
CAGAGTTTGAAAACATTACTAGACAGAAGGATTGGTTAGATTCATAGTTTTGTTGTTGAGTGAAACTTGCTTATGTATATATTTATGATATTTTGGATGTAGTCTTTTGATTGTTTAAATCTTAAAAAGTAATGGGATCTTTTGACACTGGGGTATGTTTTATTTTTATGTGTGCAAATTTTAACCATATTCTTTTCTAGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAACAAAA
...........................................................................................(((((((..((((....))))))))))).((..(((((..((((.....((((((((.((((((.....))))))...)))).))))......))))...)))))..))..................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
................................................................................................................................................................................AATTTTAACCATATTCTTTTCTAGA.................................................25111.003.009.00----1.00-1.00-------------------------------
................................................................................................................GTTTAAATCTTAAAAAGTAATGGGATCTTTTGACACTGGGGTATGTTTTATTTTTATGTGTGCAAATTTTAACCATATTCTTTTCTAG..................................................88110.0010.00-10.00-------------------------------------
...............................................................................................................................................................................AAATTTTAACCATATTCTTTTCTAG..................................................2515.005.005.00--------------------------------------
...................................................................................................................................................................................TTTAACCATATTCTTTTCTAGA.................................................2215.001.004.00---------1.00----------------------------
................................................................................................................................................................................AATTTTAACCATATTCTTTTCTAG..................................................2413.003.00-----1.00---------1.00----1.00------------------
..............................................................................................................................................................................CAAATTTTAACCATATTCTTTTCTAG..................................................2613.003.00--2.00------------------1.00-----------------
...................................................................................................................................................................................TTTAACCATATTCTTTTCTAGG.................................................2212.001.002.00--------------------------------------
..........................................................AGTGAAACTTGCTTATGTATATATTTACG...................................................................................................................................................................292.000.00------2.00--------------------------------
..................................................................................................................................................................................TTTTAACCATATTCTTTTCTAGA.................................................232.000.00---2.00-----------------------------------
...................................................................................................................................................................................TTTAACCATATTCTTTTCTAGAA................................................2311.001.00--------------1.00------------------------
.................................................................................................................................................................................ATTTTAACCATATTCTTTTCTAT..................................................231.000.00--1.00------------------------------------
....................................................................................................................................................................................TTAACCATATTCTTTTCTAGG.................................................211.000.001.00--------------------------------------
........GAAAACATTACTAGACAGAAGGATTGGTTAG...................................................................................................................................................................................................................3111.001.00----1.00----------------------------------
.......................................................................................ATATTTTGGATGTAGTCTTTTGATT..........................................................................................................................................2511.001.00------------------1.00--------------------
....................AGACAGAAGGATTGGTTAG...................................................................................................................................................................................................................1911.001.00-----------------------1.00---------------
...............................................................................................................................................................TTATTTTTATGTGTGCAAATTTTAAC.................................................................2611.001.00-------------------------1.00-------------
................................................................................................................................................................................AATTTTAACCATATTCTTTCTAG...................................................231.000.00-----------------1.00---------------------
............................................................................................................................................................................................................AGAGGAAAAAGCAAGTTGCTGGA.......................231.000.00---------1.00-----------------------------
....GTTTGAAAACATTACTAGACAGAA..............................................................................................................................................................................................................................2411.001.00-------------------1.00-------------------
..............................................................................................................................................................................................................AGGAAAAAGCAAGTTGCTCC........................2031.001.00--------------------------0.33--0.330.33--------
..............................................................................................................................................................................CAAATTTTAACCATATTCTTTTCCAG..................................................261.000.00------------------------1.00--------------
.....................................................................................................................................................................................................................................AAAACCTGTAAAGAAAGAGA.201.000.00----------------1.00----------------------
...................................................................................................................................................................................................................................GAAAAACCTGTAAAGAAAC....1911.001.001.00--------------------------------------
...............................................................................................................................AGTAATGGGATCTTTTGACACTGGGGCATG.............................................................................................301.000.00----1.00----------------------------------
......................................................GTTGAGTGAAACTTGCTT..................................................................................................................................................................................1811.001.00--------1.00------------------------------
....................................................................................................................................................................TTTATGTGTGCAAATTTTAACC................................................................2211.001.00----------------------1.00----------------
...................................................................................................................................................................................TTTAACCATATTCTTTTCTAG..................................................2111.001.00-----------1.00---------------------------
...................................................................TGCTTATGTATATATTTATGAT.................................................................................................................................................................2211.001.00-------------1.00-------------------------
..............................................................................................................................................................................................................AGGAAAAAGCAAGTTGCTCCAGAAAAACC...............2930.670.67-------0.67-------------------------------
......................................................................................................................................................................................................................GCAAGTTGCTCCAGAAAAAC................2030.670.67---------------------------0.67-----------
......................................................................................................................................................................................................AGTTAAAGAGGAAAAAGCA.................................1940.500.50----------------------------0.50----------
.........................................................................................................................................................................................................................AGTTGCTCCAGAAAAACCTGT............2130.330.33--------0.33------------------------------
.....................................................................................................................................................................................................................AGCAAGTTGCTCCAGAAAAACC...............2230.330.33--------------------------0.33------------
.............................................................................................................................................................................................................GAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGT............3330.330.33-------------------------------0.33-------
..........................................................................................................................................................................................................................GTTGCTCCAGAAAAACCTGT............2030.330.33--0.33------------------------------------
..........................................................................................................................................................................................................AAAGAGGAAAAAGCAAGTTGCTCC........................2430.330.33----------------------------------0.33----
.........................................................................................................................................................................................................TAAAGAGGAAAAAGCAAGTTGCTCC........................2530.330.33------------------------------------0.33--
..........................................................................................................................................................................................................AAAGAGGAAAAAGCAAGTTGCT..........................2230.330.33---------0.33-----------------------------
...................................................................................................................................................................................................................AAAGCAAGTTGCTCCAGA.....................1830.330.33---------------------------------0.33-----
................................................................................................................................................................................................................................CCAGAAAAACCTGTAAAGA.......1930.330.33-----------------------------------0.33---
........................................................................................................................................................................................................................AAGTTGCTCCAGAAAAACCTGTAAAGA.......2730.330.33-------------------------------------0.33-
.............................................................................................................................................................................................................GAGGAAAAAGCAAGTTGCTC.........................2030.330.33--------------------------------0.33------
.........................................................................................................................................................................................................................AGTTGCTCCAGAAAAAC................1750.200.20--------------------------------------0.20
....................................................................................................................................TGGGATCTTTTGACA.......................................................................................................1570.140.14-----------------------------0.14---------

Antisense strand
CAGAGTTTGAAAACATTACTAGACAGAAGGATTGGTTAGATTCATAGTTTTGTTGTTGAGTGAAACTTGCTTATGTATATATTTATGATATTTTGGATGTAGTCTTTTGATTGTTTAAATCTTAAAAAGTAATGGGATCTTTTGACACTGGGGTATGTTTTATTTTTATGTGTGCAAATTTTAACCATATTCTTTTCTAGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAACAAAA
...........................................................................................(((((((..((((....))))))))))).((..(((((..((((.....((((((((.((((((.....))))))...)))).))))......))))...)))))..))..................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189785SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
....................................................................................................................................................TGGGGTATGTTTTATCAG.................................................................................... 181.000.00------------1.00--------------------------