ID: uc003jhp.1_intron_2_0_chr5_32143987_r.3p
GENE: GOLPH3(1)
chr5:32143937-32144186-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
B-CELL 		(5)
BREAST 		(14)
CELL-LINE 		(4)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(11)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AATAAGTGGTGGAAAGATAAGCCCCCGAAAATTCTCGATTAGTAATTTATGTTAATTGTATTTTTTCAGTATATTATTATAGAAAGACAGGAAAGGTAAAAGGCACCAAATATGACTTTGGCTGATAATATTTCTGTTTTTTACTCTGAATTCAAGGTAAATTAGCTATTTTGTTTTATTTCTTCTTCTTTTTTTAATAGGGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTG
..........................................................................(((((.(((((((.((((.((((((((..(((((((......))))).))...........(((.(((((..((....))..)))))..))).......)))))))).))))))))))).)))))...................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTTTAG.......................................................2224.000.009.002.008.00--5.00-------------------------------------
.......................................................................................................................................................................................................................TGGAATGACTGTATATCATCTGGATTAC.......2813.003.00---3.00---------------------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTTCAG.......................................................223.000.00-3.00-----------------------------------------
..............................................................................................................................................................................TTTATTTCTTCTTCTTTTTAG.......................................................212.000.002.00------------------------------------------
.......................................................................................................................................................................................................................................CATCTGGATTACGTGGCTGGATG232.000.00-----------------2.00-------------------------
....................................................................................................................................................................................................................TTTTGGAATGACTGTATATC..................2012.002.00---------1.001.00--------------------------------
......................................................................................................................................................................................................................TTGGAATGACTGTATATCATCTGGATTAC.......2912.002.00---------------------------------1.00----1.00----
...................................................................................................................................................................................................................ATTTTGGAATGACTGTATATCA.................2212.002.00---2.00---------------------------------------
..............................................................................................................................................................................................................ACATCATTTTGGAATGACT.........................1912.002.00------2.00------------------------------------
........................................................................................................................................................................................................................................ATCTGGATTACGTGGC..1612.002.00------------1.00----------------1.00-------------
...................................................................................................................................................................................................................ATTTTGGAATGACTGTA......................1721.501.50----------0.501.00-------------------------------
...................................................................................................................................................................................................................................ATATCATCTGGATTACGTGGC..2111.001.00--------------1.00----------------------------
................................................................................................................................................................................................................................TGTATATCATCTGGATTACGTGGCTG2611.001.00----1.00--------------------------------------
....................................................................................................................................................................................................................TTTTGGAATGACTGTATA....................1811.001.00------1.00------------------------------------
......................................................................ATATTATTATAGAAAGACAGG...............................................................................................................................................................2121.001.00---------1.00---------------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTTTAGGC.....................................................241.000.00----1.00--------------------------------------
...................................................................................................................................................................................................................................ATATCATCTGGATTACGTG....1911.001.00-----------------------1.00-------------------
........................................................................................................................................................................................................................GGAATGACTGTATATCATCTGGATTAC.......2711.001.00----------------1.00--------------------------
........................................................................................................................................................................................................................GGAATGACTGTATATCATCTGGATTACG......2811.001.00-------------------------------------1.00-----
.......................................................................................................................................................................................................................................CATCTGGATTACGTGGC..1711.001.00-----------------------------------------1.00-
....................................................................................................................................................................................................................TTTTGGAATGACTGTATATCA.................2111.001.00---1.00---------------------------------------
.......................................................................................................................................................................................................................TGGAATGACTGTATATCA.................1811.001.00-------------1.00-----------------------------
.................................................................................................................................................................................................................................GTATATCATCTGGATTACGTGGCT.2411.001.00------1.00------------------------------------
.............................................................................................................................TAATATTTCTGTTTTTTGTTT........................................................................................................211.000.00--------1.00----------------------------------
................................................................................................................................................................................TATTTCTTCTTCTTTTTTCTAG....................................................221.000.00-1.00-----------------------------------------
...........................................................................................................................................................................................................................ATGACTGTATATCATCTGGATTACGT.....2611.001.00------------1.00------------------------------
.................................................................................................................................................................................ATTTCTTCTTCTTTTTTTCG.....................................................201.000.00-1.00-----------------------------------------
............................................................................................................................................................................................................................TGACTGTATATCATCTGGATTACGTGGCT.2911.001.00-----------------------------------1.00-------
....................................................................................................................................................................................................................TTTTGGAATGACTGTATATCATCTGG............2611.001.00----------------1.00--------------------------
......................................................................................................................................................................................................................TTGGAATGACTGTATATC..................1811.001.00------------------1.00------------------------
..................................................................................................................................................................................TTTCTTCTTCTTTTTTCGGC....................................................201.000.00----1.00--------------------------------------
....................................................................................................................................................................................................................................TATCATCTGGATTACGTGGCT.2111.001.00----------------------------------1.00--------
.............................................................................................................................................................................................TTTTTTAATAGGGTTACAG..........................................191.000.00---------------1.00---------------------------
..................................................................................................................................................................................................................CATTTTGGAATGACTGTATATC..................2211.001.00---1.00---------------------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTTTTG.......................................................221.000.00--1.00----------------------------------------
.........................................................................................................................................................................................................................GAATGACTGTATATCATCTGGATTACG......2711.001.00----------1.00--------------------------------
......................................................................................................................................................................................................................................TCATCTGGATTACGTGGCT.1911.001.00-------1.00-----------------------------------
............................................................................................................................................................................................................................TGACTGTATATCATCTGGA...........1911.001.00------------------------1.00------------------
.......................................................................................CAGGAAAGGTAAAAGTGGA................................................................................................................................................191.000.00-------1.00-----------------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTCAA........................................................211.000.00-1.00-----------------------------------------
...................................................................................................................................................................................TTCTTCTTCTTTTTTTAATTTCT................................................231.000.00----1.00--------------------------------------
............................................................................................................................................................................................................................TGACTGTATATCATCTGGATTACG......2411.001.00--------------1.00----------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTTTTTAATAG..................................................2711.001.00-1.00-----------------------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTTAG........................................................211.000.001.00------------------------------------------
.......................................................................................................................................................................................................................TGGAATGACTGTATATCATTT..............211.000.00------------------------------------1.00------
..................................................................................................................................................................................TTTCTTCTTCTTTTTTTAATCTAG................................................241.000.00-1.00-----------------------------------------
........................................................................................................................................................................................................................................ATCTGGATTACGTGGCTGG191.000.00-------------------------1.00-----------------
........................................................................................................................................................................................................................GGAATGACTGTATATCATCT..............2011.001.00-------------------------------1.00-----------
....................................................................................................................................................................................................................TTTTGGAATGACTGTATATCATC...............2311.001.00---------------------------1.00---------------
..................................................................................................................................................................................TTTCTTCTTCTTTTTTCCG.....................................................191.000.00----1.00--------------------------------------
...............................................................................................................................................................................................................CATCATTTTGGAATGACTGAATA....................231.000.00-------1.00-----------------------------------
...................................................................................................................................................................................TTCTTCTTCTTTTTTTAACAG..................................................211.000.00-----1.00-------------------------------------
............................................................................................................AATATGACTTTGGCTGATAATATTT.....................................................................................................................2511.001.00------1.00------------------------------------
.......................................................................................................................................................................ATTTTGTTTTATTTCTTCTTCTTTTTC........................................................271.000.00----1.00--------------------------------------
..............................................................................................................................................................................................................................ACTGTATATCATCTGGATT.........1911.001.00---1.00---------------------------------------
..................................................................................................................ACTTTGGCTGATAATATTTCTGTTTTTT............................................................................................................2811.001.00----------------------------1.00--------------
.....................................................................................................................................................................................................................................ATCATCTGGATTACGTGGCT.2011.001.00-------1.00-----------------------------------
....................................................................................................................................................................................................................TTTTGGAATGACTGTATATCATCTGGATT.........2911.001.00-------------------1.00-----------------------
.........................................................................................................................................................................................................................GAATGACTGTATATCATCTGGATTACGTGGC..3111.001.00---------------------------------------1.00---
......................................................................................................................................................................................................................TTGGAATGACTGTATATCATCTGGATTACGTGGCT.3511.001.00--------------------------------1.00----------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTCTAG.......................................................221.000.00--------1.00----------------------------------
.............................................................................................................................................................................TTTTATTTCTTCTTCTTTAG.........................................................201.000.00-1.00-----------------------------------------
..........................................................................................................................................................................................................................AATGACTGTATATCATCTGGATTACGTG....2811.001.00-------------1.00-----------------------------
................................................................................................................................................................................................................................TGTATATCATCTGGATTACGTGGC..2411.001.00-----------1.00-------------------------------
...................................................................................................................................................................................................................................ATATCATCTGGATTACGTGGCTTT241.000.00----------------------1.00--------------------
.....................................................................................................................................................................................CTTCTTCTTTTTTTAACAG..................................................191.000.00-1.00-----------------------------------------
.....................................................................................................................................................................................................................TTTGGAATGACTGTATATCATCTGGA...........2611.001.00----------------------------------------1.00--
.......................................................................................................................................................................................TCTTCTTTTTTTAATAATC................................................191.000.00--------1.00----------------------------------
...........................................................................................................................................................................................................................ATGACTGTATATCATCTGGATTAC.......2411.001.00--------------------1.00----------------------
.......................................................................................................................................................................................................................................CATCTGGATTACGTGGCT.1811.001.00------------------------------1.00------------
........................................................................................................................................................................................................................GGAATGACTGTATATCAT................1820.500.50------0.50------------------------------------
...............................................................................................................................ATATTTCTGTTTTTTACT.........................................................................................................1840.500.50------0.250.25-----------------------------------
.......................................................................................CAGGAAAGGTAAAAGGCA.................................................................................................................................................1840.250.25------------------------------------------0.25
...................................................................................................................................................................................................................ATTTTGGAATGACTGT.......................1650.200.20------------------0.20------------------------

Antisense strand
AATAAGTGGTGGAAAGATAAGCCCCCGAAAATTCTCGATTAGTAATTTATGTTAATTGTATTTTTTCAGTATATTATTATAGAAAGACAGGAAAGGTAAAAGGCACCAAATATGACTTTGGCTGATAATATTTCTGTTTTTTACTCTGAATTCAAGGTAAATTAGCTATTTTGTTTTATTTCTTCTTCTTTTTTTAATAGGGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTG
..........................................................................(((((.(((((((.((((.((((((((..(((((((......))))).))...........(((.(((((..((....))..)))))..))).......)))))))).))))))))))).)))))...................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)
......................................................................................................................................................................................TTCTTCTTTTTTTAATAAATG............................................... 211.000.00--------1.00----------------------------------
..................................................................................................AAAGGCACCAAATATGAC...................................................................................................................................... 181.000.00---------1.00---------------------------------
.............................................................................................................................................................TAAATTAGCTATTTTGCTA.......................................................................... 191.000.00--------------------------1.00----------------
..........................................................TATTTTTTCAGTATATTAAC............................................................................................................................................................................ 201.000.00---------------------1.00---------------------
...............................................................................................GTAAAAGGCACCAAATATA........................................................................................................................................ 191.000.00---------------1.00---------------------------