uc003jgr.1_intron_10_0_chr5_24593723

TTTACAATTATATTTTTGTACATTGTAGACATATTGCTAGACAAGTAATATTTCTCAAAGCTATCCGTTATTGTATGAAAAATAAAGAAAATGAATGTTTTGGTTGTTATTAATAAACTATTGTCACTTTAAATTTTAAATGAAAAGTAATAATGATAATGTTGTCAACTAACTTTTTTTGTTTGTTTGTTTGTTTGAAGCTTTGGGAAACATGAACAAAACATTGATGAAATGTTGGAAACCAGTTGAA ........................................................................................................................................((((..(((((......(((((....))))).......)))))..))))................................................................. .....................................................................................................................................134...............................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR029128(GSM416757) H520. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex)	SRR029130(GSM416759) DLD2. (cell line)	SRR343335	SRR343334	SRR040030(GSM532915) G013N. (cervix)	SRR060169(GSM565979) 5-8F_cytoplasm. (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR343337
..........................................................................................................................................AATGAAAAGTAATAATTGC.............................................................................................	19		49.00	0.00	24.00	-	22.00	-	-	-	3.00	-	-	-	-	-	-	-
..........................................................................................................................................AATGAAAAGTAATAATTGCT............................................................................................	20		7.00	0.00	6.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................AACTTTTTTTGTTTGTTTGTTTGG........................................................	24		3.00	0.00	-	2.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTCAAG....................................................	25		3.00	0.00	-	3.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTGG...................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................AACTTTTTTTGTTTGTTTGTTTGGT.......................................................	25		2.00	0.00	-	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGTTT.....................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTTG...................................................	26		2.00	0.00	-	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTCTAG....................................................	25		2.00	0.00	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTC....................................................	25		2.00	0.00	-	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................................................................AAGCTTTGGGAAACATGAACAAAACATTGATGA....................	33	1	2.00	2.00	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-
...........................................................................................................................................ATGAAAAGTAATAATTGC.............................................................................................	18		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTAGG..................................................	29		2.00	0.00	-	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGTCT.....................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTTGGGC..................................................	27		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTCAAG..................................................	29		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCCTG...................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGCTTC.....................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTGG....................................................	27		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGTT......................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTTTC..................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTCC...................................................	28		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTTGATTCG................................................	29		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTCG...................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTCGAG......................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTGC......................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................CTTTTTTTGTTTGTTTGTTTGTTCCC....................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCGTC...................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTCTG..................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTTAA..................................................	29		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTAG...................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................CTTTTTTTGTTTGTTTGTTTGTTTGCTTG.................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTC....................................................	27		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................AACTTTTTTTGTTTGTTTGTTTGGTT......................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCAAC...................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGCCT.....................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTCATA......................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................................GCTTTGGGAAACATGAAC.................................	18	1	1.00	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
............................................................................................GAATGTTTTGGTTGTTAT............................................................................................................................................	18	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTGCTT...................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-

TTTACAATTATATTTTTGTACATTGTAGACATATTGCTAGACAAGTAATATTTCTCAAAGCTATCCGTTATTGTATGAAAAATAAAGAAAATGAATGTTTTGGTTGTTATTAATAAACTATTGTCACTTTAAATTTTAAATGAAAAGTAATAATGATAATGTTGTCAACTAACTTTTTTTGTTTGTTTGTTTGTTTGAAGCTTTGGGAAACATGAACAAAACATTGATGAAATGTTGGAAACCAGTTGAA
........................................................................................................................................((((..(((((......(((((....))))).......)))))..)))).................................................................
.....................................................................................................................................134...............................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR029128(GSM416757)
H520. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

SRR029130(GSM416759)
DLD2. (cell line)

SRR343335

SRR343334

SRR040030(GSM532915)
G013N. (cervix)

SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR343337

..........................................................................................................................................AATGAAAAGTAATAATTGC.............................................................................................

49.00

0.00

24.00

22.00

3.00

..........................................................................................................................................AATGAAAAGTAATAATTGCT............................................................................................

7.00

0.00

6.00

1.00

..........................................................................................................................................................................AACTTTTTTTGTTTGTTTGTTTGG........................................................

3.00

0.00

2.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTCAAG....................................................

3.00

0.00

3.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTGG...................................................

2.00

0.00

2.00

..........................................................................................................................................................................AACTTTTTTTGTTTGTTTGTTTGGT.......................................................

2.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGTTT.....................................................

2.00

0.00

2.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTTG...................................................

2.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTCTAG....................................................

2.00

0.00

2.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTC....................................................

2.00

0.00

1.00

.....................................................................................................................................................................................................AAGCTTTGGGAAACATGAACAAAACATTGATGA....................

2.00

...........................................................................................................................................ATGAAAAGTAATAATTGC.............................................................................................

2.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTAGG..................................................

2.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGTCT.....................................................

2.00

0.00

2.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTTGGGC..................................................

2.00

0.00

2.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTCAAG..................................................

2.00

0.00

2.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCCTG...................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGCTTC.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTGG....................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGTT......................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTTTC..................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTCC...................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTTGATTCG................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTCG...................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTCGAG......................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTGC......................................................

1.00

0.00

1.00

............................................................................................................................................................................CTTTTTTTGTTTGTTTGTTTGTTCCC....................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCGTC...................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTCTG..................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTTAA..................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCTAG...................................................

1.00

0.00

1.00

............................................................................................................................................................................CTTTTTTTGTTTGTTTGTTTGTTTGCTTG.................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGTTTTC....................................................

1.00

0.00

1.00

..........................................................................................................................................................................AACTTTTTTTGTTTGTTTGTTTGGTT......................................................

1.00

0.00

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTCAAC...................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTGGCCT.....................................................

1.00

0.00

1.00

...........................................................................................................................................................................ACTTTTTTTGTTTGTTTGTTTCATA......................................................

1.00

0.00

1.00

.......................................................................................................................................................................................................GCTTTGGGAAACATGAAC.................................

1.00

............................................................................................GAATGTTTTGGTTGTTAT............................................................................................................................................

1.00

.............................................................................................................................................................................TTTTTTTGTTTGTTTGTTTGTTGCTT...................................................

1.00

0.00

1.00