ID: uc003jfk.2_intron_1_0_chr5_14673828_f.3p
GENE: (2)
chr5:14678590-14678839+


(1)
AGO1.ip OTHER.mut
(2)
B-CELL
(1)
BREAST
(14)
CELL-LINE
(1)
HEART
(1)
HELA
(5)
LIVER
(1)
OTHER
(7)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GACACCCATTGGGAGACCCCCATGGTTATCTAGGGGTGAGGTGATGGTGGTCTGGACCAGCGGTTAGGCAGTGGTTGAATTCTGGATTTTTTGACGTGAAGAAAGAAAATGAAGAGTGAAGGGTAACCCCCAACTGAAGCAGTATTCTGATTATGCTTTGATTTATTATTTGCTTTTTTTTTTTTTAAATTCTTTAACAGAACCGAGATTAAGCGTAGCTCCTGAAATGGATATCATGGACTACTGCAAA
.......................................................................................................................................(((((((......(((((.....)))))......)))))))..........................................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCAATC......................................................2432.000.0021.0010.00---1.00---------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCTTG.......................................................233.000.001.001.00-------1.00-----------------------
....................................................................................................................................................................................................................................GGATATCATGGACTACTGCAAAAT243.000.00---3.00-----------------------------
.............................................................................................................................................................................................................AGATTAAGCGTAGCTCCTGA.........................2012.002.00--------------1.00---1.00--------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCAATA......................................................242.000.001.001.00-------------------------------
..............................................................................................................................................................................................................................TGAAATGGATATCATGGACTACTGCA..2612.002.00--------2.00------------------------
................................................................................................................................................................................................................................AAATGGATATCATGGACTACTGC...2312.002.00---2.00-----------------------------
..................................................................................................................................CAACTGAAGCAGTATTCTGATTAT................................................................................................2411.001.00-------1.00-------------------------
.................................................................................................................................................................................................................................AATGGATATCATGGACTACTGC...2211.001.00---------------1.00-----------------
.............................................................................................................................................................................................................AGATTAAGCGTAGCTCCTG..........................1911.001.00----1.00----------------------------
............................................TGGTGGTCTGGACCAACAG...........................................................................................................................................................................................191.000.00------------------------1.00--------
.....................................................................................................................................................................TTATTTGCTTTTTTTTTTTCAAG..............................................................231.000.00--1.00------------------------------
...............................................TGGTCTGGACCAGCGGTTAGGCAGCGG................................................................................................................................................................................271.000.00--1.00------------------------------
......................................................................................................................................................................................................................GTAGCTCCTGAAATGGATATCA..............2211.001.00----------1.00----------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCTTTAACAG..................................................2811.001.00-----1.00---------------------------
................................................................................................................................................................................................................TTAAGCGTAGCTCCTGAAATGGA...................2311.001.00----1.00----------------------------
...............................................................................................................................................................................................................................GAAATGGATATCATGGACTACT.....2211.001.00-------------------------1.00-------
...............................................................................................................................................................................TTTTTTTTTTTAAATTCTTTCAA....................................................231.000.00-1.00-------------------------------
.............................................................................................................................................................................................................................CTGAAATGGATATCATGG...........1811.001.00-------------------1.00-------------
........................................................................................................................................................................................................AACCGAGATTAAGCGTAGCTCCTGAAATG.....................2911.001.00----------------------1.00----------
............................................................................................................................................................TTTGATTTATTATTTGCTTTTTTTTTTTA.................................................................291.000.00--1.00------------------------------
....................................................................................................................................................................ATTATTTGCTTTTTTTTTTTACC...............................................................231.000.00------1.00--------------------------
.............................................................................................................................................................................................................................CTGAAATGGATATCATGGACTACTGC...2611.001.00--------1.00------------------------
..............................................................................ATTCTGGATTTTTTGGCAG.........................................................................................................................................................191.000.00--1.00------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCACAG......................................................241.000.00---------1.00-----------------------
...............................................................................................................................................................................................................................GAAATGGATATCATGGACTACTG....2311.001.00--------------------------1.00------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCGG........................................................221.000.00-----1.00---------------------------
.................................................................................................................................................................................................TTAACAGAACCGAGATTAAGCGT..................................2311.001.00-------1.00-------------------------
........................................................................................................................................................................................................AACCGAGATTAAGCGTAGCTCC............................2211.001.00-------1.00-------------------------
.....................................................................................................................................................................................................CAGAACCGAGATTAAGCGTAGCTCCT...........................2611.001.00---1.00-----------------------------
.............................................................................................................................................................................................................AGATTAAGCGTAGCTCCTGAAATGG....................2511.001.00----1.00----------------------------
................................................................................................................................................................................................................TTAAGCGTAGCTCCTGAAATGGATA.................2511.001.00----------------------------1.00----
...............................................................................................................................................................................................................ATTAAGCGTAGCTCCTGAAATG.....................2211.001.00---------------------1.00-----------
..................................................................................................................................................................................................................................ATGGATATCATGGACTACT.....1911.001.00---------------------------1.00-----
..............................................................................................................................................................................TTTTTTTTTTTTAAATTCTTTTATG...................................................251.000.00-----1.00---------------------------
.................................................................................................................................................................TTTATTATTTGCTTTTTTTTTCCCC................................................................251.000.00--1.00------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCTCCTT.....................................................251.000.001.00--------------------------------
......................................................................GTGGTTGAATTCTGGATTTTTTGACGT.........................................................................................................................................................2711.001.00----1.00----------------------------
.........................................................CAGCGGTTAGGCAGTGGTTGAATT.........................................................................................................................................................................2411.001.00----1.00----------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTAAATTCTTCG......................................................231.000.001.00--------------------------------
....................................................................................................................................................................ATTATTTGCTTTTTTTTTCAC.................................................................211.000.00------1.00--------------------------
......................................................................................................................................................................................................................................ATATCATGGACTACTGCAAA2011.001.00----------------1.00----------------
....................................................................................................................................................................ATTATTTGCTTTTTTTTTTCAC................................................................221.000.00------1.00--------------------------
...................................................................................................AGAAAGAAAATGAAGAGTA....................................................................................................................................191.000.00------------1.00--------------------
......................................................................................................................................................................................................AGAACCGAGATTAAGCGTAGC...............................2111.001.00--------------------1.00------------
..........................................................................................................................................................................................................CCGAGATTAAGCGTAGCT..............................1811.001.00-------1.00-------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCCAGC......................................................241.000.00--1.00------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCCCTA......................................................241.000.00---------1.00-----------------------
..........................................................................................................................................................................TGCTTTTTTTTTTTTTAAAAGGG.........................................................231.000.00------1.00--------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTAAATTCTTTTTG....................................................261.000.00-1.00-------------------------------
...................................................................................................................................................................................................................................TGGATATCATGGACT........1560.170.17-------------------------------0.17-
...................................................................................................................................................................TATTATTTGCTTTTTTTTTT...................................................................2090.110.11--------------------------------0.11

Antisense strand
GACACCCATTGGGAGACCCCCATGGTTATCTAGGGGTGAGGTGATGGTGGTCTGGACCAGCGGTTAGGCAGTGGTTGAATTCTGGATTTTTTGACGTGAAGAAAGAAAATGAAGAGTGAAGGGTAACCCCCAACTGAAGCAGTATTCTGATTATGCTTTGATTTATTATTTGCTTTTTTTTTTTTTAAATTCTTTAACAGAACCGAGATTAAGCGTAGCTCCTGAAATGGATATCATGGACTACTGCAAA
.......................................................................................................................................(((((((......(((((.....)))))......)))))))..........................................................................
.............................................................................................................................126.......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................GGTTAGGCAGTGGTTTC............................................................................................................................................................................ 171.000.00-----------------------------1.00---
.........................................TGATGGTGGTCTGGAAT................................................................................................................................................................................................ 171.000.00-------------1.00-------------------
.................................................................................................................................................................TTTATTATTTGCTTTTTAGG..................................................................... 201.000.00-----------1.00---------------------
................................CAGACCACCATCACCTCACCCC.................................................................................................................................................................................................... 2211.001.00-----------------------1.00---------
..............................................................................ATTCTGGATTTTTTGAGAAG........................................................................................................................................................ 201.000.00-----------------1.00---------------
..................................................................................................AAGAAAGAAAATGAAGATTG.................................................................................................................................... 201.000.00-----1.00---------------------------
.................................................................................................................................................................................................TCTCGGTTCTGTTAA.......................................... 1540.250.25------------------------------0.25--