ID: uc003jet.1_intron_10_0_chr5_10400955_f.3p
GENE: MARCH6(11)
chr5:10401971-10402220+


(14)
CELL-LINE
(1)
CERVIX
(2)
HEART
(5)
HELA
(1)
LIVER
(4)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
TCATTTTTTAGTAATATATAACAGTCAGTGAGAGAATTTGGTTTTCAGAGATGTCATCCAAAGCAGATTTTACAGTTGTTTCCTGGTTATAAATTGTCTCAACAATTCTCTTTTAGTCATTTAGATTGTTTAATATGGGAAAACCGGGGTGTAGAACATGTTGTAAAATTAAATTTTATTTACTTTTTTCTTATTTCCAGGTCCAAGCATCTCATTTTGAAGGCCTAATCACAACCATAGTTGGGTATAT
...........................................................................................((((....(((((.((((....(((((.....))))).......(((.....)))......))))..)))))...))))................................................................................
...........................................................................................92..................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM359177(GSM359177)
hela_nucl_a. (hela)
...........TAATATATAACAGTCAG..............................................................................................................................................................................................................................1727.007.00-7.00------------------------------------
...................................................................................................................................................................TAAAATTAAATTTTATTTACTTTTT..............................................................2514.004.004.00-------------------------------------
.............................................................................................................................................................................TTTTATTTACTTTTTTCTTATTTCCAT..................................................273.000.00---3.00----------------------------------
.................................................................................................................................................................................ATTTACTTTTTTCTTAAG.......................................................183.000.00--2.00------------1.00----------------------
...TTTTTTAGTAATATATAACAGTCAGTGAGAGA.......................................................................................................................................................................................................................3213.003.00------3.00-------------------------------
................................................................................................................TTAGTCATTTAGATTGTTTAATATGGGA..............................................................................................................2812.002.00---------2.00----------------------------
..........................................................................................................................................................................AAATTTTATTTACTTTTTTCTTATTTCC....................................................2812.002.00--2.00-----------------------------------
...................................................................................................................................................................TAAAATTAAATTTTATTTACTTTTC..............................................................2512.001.001.00-1.00-----------------------------------
.....................................................................................................................................................................................ACTTTTTTCTTATTTCTGG..................................................192.000.00-----2.00--------------------------------
...........................................................................................................................................................................................................................AAGGCCTAATCACAACCATAGTTG.......2412.002.00--------2.00-----------------------------
..........................AGTGAGAGAATTTGGAATT.............................................................................................................................................................................................................191.000.00-------------------------1.00------------
.........................................................................................................................TAGATTGTTTAATATGGGAAAACCGGGGTGTAGAACATGTTGTAAAATTAAATTTTATTTACTTTTTTCTTATTTCCAGA.................................................801.000.00----------------------------1.00---------
................................................................................................TCTCAACAATTCTCTTTCA.......................................................................................................................................191.000.00------------1.00-------------------------
........................................GTTTTCAGAGATGTCATCCAAAG...........................................................................................................................................................................................2311.001.00------------------------------1.00-------
...................................................................................................................................................................TAAAATTAAATTTTATTTACTTCTT..............................................................251.000.001.00-------------------------------------
......................................................................................................................................................................................................................TTTTGAAGGCCTAATCACAACC..............2211.001.00--------------------------------1.00-----
..........................................................................................................................................................................AAATTTTATTTACTTTTTCTTT..........................................................221.000.001.00-------------------------------------
.............................................................................................................................................................................TTTTATTTACTTTTTTCTTATTTCCAG..................................................2711.001.00------------------1.00-------------------
...................................................................................................................................................................................TTACTTTTTTCTTATTTCTG...................................................201.000.00-------1.00------------------------------
.......................................................................................................................................................................ATTAAATTTTATTTACTTTTTTCTTACTT......................................................291.000.001.00-------------------------------------
................................................................................................................................................................................TATTTACTTTTTTCTTATTTCCAG..................................................2411.001.00-----------------------------1.00--------
............................................................................................................................................AAACCGGGGTGTAGAACATG..........................................................................................2011.001.00-------------------------------1.00------
....................................................................................................................................................GTGTAGAACATGTTGTAAA...................................................................................1911.001.00------------------------------------1.00-
..................................................................................................TCAACAATTCTCTTTTTC......................................................................................................................................181.000.00-----------1.00--------------------------
......................................................................................................................................................GTAGAACATGTTGTAAAATTAAATTTTATT......................................................................3011.001.00----------------1.00---------------------
...............................................................................................................................................................................TTATTTACTTTTTTCTTGG........................................................191.000.00-----1.00--------------------------------
..........................................................................................................................................................................AAATTTTATTTACTTTTTTCTT..........................................................2211.001.001.00-------------------------------------
.....................................................................................................................................................................AAATTAAATTTTATTTACTTTTT..............................................................2311.001.00----------1.00---------------------------
....................................................................................................................................................................................................................................TCACAACCATAGTTGGGTA...1911.001.00-----------------------1.00--------------
.....................................................................................................ACAATTCTCTTTTAGTCATTTAGATTGTTTAATATGGGAAAACCGGGGTGTAGAAC.............................................................................................5611.001.00----------------------------------1.00---
......................................................................................................................................................GTAGAACATGTTGTAAAATTAAATTT..........................................................................2611.001.00-------------------------------------1.00
................................................................................................................................................................................TATTTACTTTTTTCTACTG.......................................................191.000.00------------1.00-------------------------
.......................................................................................................................................................................................TTTTTTCTTATTTCCAACTT...............................................201.000.00----1.00---------------------------------
.............................................................................................................................................AACCGGGGTGTAGAACATGT.........................................................................................2011.001.00--------------------------1.00-----------
..................................................................................................................................................................................TTTACTTTTTTCTTATTTCCAG..................................................2211.001.00-----------------------------------1.00--
...................AACAGTCAGTGAGAGAATTTGGTTTTC............................................................................................................................................................................................................2711.001.00----1.00---------------------------------
......................................................CATCCAAAGCAGATTTTACAGTT.............................................................................................................................................................................2311.001.00---------------------1.00----------------
.......................................................................................................................................................................................TTTTTTCTTATTTCCTTTC................................................191.000.001.00-------------------------------------
...............................................................................................................................................CCGGGGTGTAGAACATGTTGT......................................................................................2111.001.00---------------------------1.00----------
....................................................................................................................................................................AAAATTAAATTTTATTTACTTCTT..............................................................241.000.00-------1.00------------------------------
.....................................................................................................................................................TGTAGAACATGTTGTAAAATTAA..............................................................................2311.001.00-------------1.00------------------------
...................................................................................................................................................................TAAAATTAAATTTTATTTACTCTTT..............................................................251.000.001.00-------------------------------------
...................................................................................................................................................................................................TCCAGGTCCAAGCATCTCATTTTGAA.............................2611.001.00----------------------1.00---------------
....................................................................................................................................ATATGGGAAAACCGGGGTGTAGAACATG..........................................................................................2811.001.00----1.00---------------------------------
...............................................................................................................................................CCGGGGTGTAGAACATGTTGTAAAATT................................................................................2711.001.00--------------1.00-----------------------
.........................................................................................................................................GGAAAACCGGGGTGTAGAACATGT.........................................................................................2411.001.00---------------------------------1.00----
.....................CAGTCAGTGAGAGAATTTGGTT...............................................................................................................................................................................................................2211.001.00-------------1.00------------------------
...................................................................................................................................................................TAAAATTAAATTTTATTTACTTTT...............................................................2411.001.00---------------1.00----------------------
......................................................................................................................ATTTAGATTGTTTAATATGGGAAAACC.........................................................................................................2711.001.00--------------1.00-----------------------
....................................................................................................................................................................AAAATTAAATTTTATTTACTTTTT..............................................................2411.001.00-------1.00------------------------------
....................................................................................................................................................................AAAATTAAATTTTATTTACTTT................................................................2211.001.00----------1.00---------------------------

Antisense strand
TCATTTTTTAGTAATATATAACAGTCAGTGAGAGAATTTGGTTTTCAGAGATGTCATCCAAAGCAGATTTTACAGTTGTTTCCTGGTTATAAATTGTCTCAACAATTCTCTTTTAGTCATTTAGATTGTTTAATATGGGAAAACCGGGGTGTAGAACATGTTGTAAAATTAAATTTTATTTACTTTTTTCTTATTTCCAGGTCCAAGCATCTCATTTTGAAGGCCTAATCACAACCATAGTTGGGTATAT
...........................................................................................((((....(((((.((((....(((((.....))))).......(((.....)))......))))..)))))...))))................................................................................
...........................................................................................92..................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM359177(GSM359177)
hela_nucl_a. (hela)
........................................................................................................................................................AGAACATGTTGTAAAATGAA.............................................................................. 201.000.00--------------------1.00-----------------
............................................................................................................................................................CATGTTGTAAAATTAGCT............................................................................ 181.000.00-------------------1.00------------------
.........................................................................................................................TAGATTGTTTAATATCAAG.............................................................................................................. 191.000.00-----------1.00--------------------------
........................................................................................................................CATATTAAACAATCTAA................................................................................................................. 1711.001.00-----------------1.00--------------------
.........................................................................................................................................................................TAAATTTTATTTACTTTTCACA........................................................... 221.000.00------------------------1.00-------------