ID: uc003jep.2_intron_4_0_chr5_10244613_r.5p
GENE: FAM173B(1)
chr5:10249770-10250019-


(1)
AGO2.ip 		(17)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(34)
CELL-LINE 		(6)
CERVIX 		(3)
HELA 		(5)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(19)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TTTTTTTTTTAAAAACGCTGTTGGAAATCTCGCGATGGAGGGAGGAGGAGGTGAGGCTGGAGCGGCTTGGCGGGTTCCTGGGGGCATGAGAAGGGGTGCGGGCGGGCCGGGGGCTCGCGGTCAGCTGAGGTCTCCACTGTCGAGGCGGTGACCGGGTGCGGGCGGCTGCTCTGGCCTCCAGCCTGGCCTTCGGTGACCAGAGCTCCTGGTCGCCGCGCGGTGCCCGCGCCGGTTCTGGCGATCCTTGTCG
....................................................((((((..(((((((..(((((..(((((..((((........)))).......)))))..))))))))).)))..))))))..((((....))))......................................................................................................
..................................................51...............................................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038863(GSM458546)
MM603. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040011(GSM532896)
G529T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
..............................................................................................................................GAGGTCTCCACTGTCGAG..........................................................................................................18110.0010.0010.00-------------------------------------------------------------------------------------------------
.....................................................AGGCTGGAGCGGCTTGGC...................................................................................................................................................................................1819.009.00------2.00---1.001.00---------1.00-1.00-1.00-------2.00----------------------------------------------------------------
....................................................GAGGCTGGAGCGGCTTGG....................................................................................................................................................................................1817.007.00---3.00--1.00--------1.002.00---------------------------------------------------------------------------------
........................................................................................................................TCAGCTGAGGTCTCCACTG...............................................................................................................1916.006.006.00-------------------------------------------------------------------------------------------------
..............................................................................................................................GAGGTCTCCACTGTCGAGGC........................................................................................................2016.006.005.00-------1.00-----------------------------------------------------------------------------------------
......................................................................CGGGTTCCTGGGGGCATG..................................................................................................................................................................1816.006.00--2.00---1.00--------1.00--------1.00------------------1.00------------------------------------------------------
.......................................................................................................................................ACTGTCGAGGCGGTGACCGGG..............................................................................................2115.005.00-5.00------------------------------------------------------------------------------------------------
..................................................................................................CGGGCGGGCCGGGGGCTCGCGG..................................................................................................................................2215.005.00------------4.00---------------1.00---------------------------------------------------------------------
...................................................................TGGCGGGTTCCTGGGGGCA....................................................................................................................................................................1914.004.00----------1.00-----------3.00---------------------------------------------------------------------------
.....................................................................................................GCGGGCCGGGGGCTCGCGGTCAGCTGAGGT.......................................................................................................................3014.004.00-3.00--1.00---------------------------------------------------------------------------------------------
.............................................................................CTGGGGGCATGAGAAGGG...........................................................................................................................................................1814.004.00----------1.00---1.00----------------------1.001.00-----------------------------------------------------------
..................................................GTGAGGCTGGAGCGGCTTGG....................................................................................................................................................................................2013.003.00---------------------1.00---------1.00---------------------------------1.00--------------------------------
...............................................GAGGTGAGGCTGGAGCGG.........................................................................................................................................................................................1813.003.00---3.00----------------------------------------------------------------------------------------------
..........................................................................................................................................GTCGAGGCGGTGACCGGG..............................................................................................1813.003.00-3.00------------------------------------------------------------------------------------------------
..................................................GTGAGGCTGGAGCGGCTTG.....................................................................................................................................................................................1913.003.00---------2.00----1.00-----------------------------------------------------------------------------------
.....................................................AGGCTGGAGCGGCTTGGCG..................................................................................................................................................................................1913.003.00----------1.00--------------1.00--------------------1.00---------------------------------------------------
..................................ATGGAGGGAGGAGGAGGTATAC..................................................................................................................................................................................................223.000.00---------3.00----------------------------------------------------------------------------------------
...................................................................................................................................CTCCACTGTCGAGGCGG......................................................................................................1713.003.00--3.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CGGTGACCAGAGCTCCTGG.........................................1912.002.002.00-------------------------------------------------------------------------------------------------
..............................................................................................GGTGCGGGCGGGCCGGGGGCTCGCGGT.................................................................................................................................2712.002.00-2.00------------------------------------------------------------------------------------------------
.........................................................................GTTCCTGGGGGCATGAGAAG.............................................................................................................................................................2012.002.00----1.00------------------------------------------------1.00--------------------------------------------
....................................................................................CATGAGAAGGGGTGCGGG....................................................................................................................................................1812.002.00--------------------------------2.00-----------------------------------------------------------------
....................................................GAGGCTGGAGCGGCTTGGCG..................................................................................................................................................................................2012.002.00---1.00--------------------------------------------------------------------------1.00-------------------
....................................GGAGGGAGGAGGAGGTGAGA..................................................................................................................................................................................................202.000.00-2.00------------------------------------------------------------------------------------------------
................................................................................................TGCGGGCGGGCCGGGGGCTCGCGGT.................................................................................................................................2512.002.00-------------1.00----1.00-------------------------------------------------------------------------------
............................................GAGGAGGTGAGGCTGGAGCGG.........................................................................................................................................................................................2112.002.00----------------2.00---------------------------------------------------------------------------------
.....................................GAGGGAGGAGGAGGTGAGGCTGGAGCGGCTTG.....................................................................................................................................................................................3212.002.00-----------------------------2.00--------------------------------------------------------------------
....................................................GAGGCTGGAGCGGCTTGGC...................................................................................................................................................................................1912.002.00-----------------------1.00------1.00-------------------------------------------------------------------
..........................................AGGAGGAGGTGAGGCTGGAGCGG.........................................................................................................................................................................................2312.002.00---2.00----------------------------------------------------------------------------------------------
..............................CGCGATGGAGGGAGGAGGAGG.......................................................................................................................................................................................................2112.002.00--------------------------------------------------------1.00---------1.00-------------------------------
.....................................................AGGCTGGAGCGGCTTGGCGGG................................................................................................................................................................................2111.001.00-------1.00------------------------------------------------------------------------------------------
...................................................................................GCATGAGAAGGGGTGCG......................................................................................................................................................1711.001.00-------------1.00------------------------------------------------------------------------------------
.....................................GAGGGAGGAGGAGGTGAGGCTGGAGCGGCTA......................................................................................................................................................................................311.000.00-------------------------------------------------------------1.00------------------------------------
............................................GAGGAGGTGAGGCTGGAGCG..........................................................................................................................................................................................2021.001.00-----------0.50-----------------------------0.50--------------------------------------------------------
.................................................................................................GCGGGCGGGCCGGGGAGTG......................................................................................................................................191.000.00-------------------------------------------------1.00------------------------------------------------
............AAACGCTGTTGGAAATCTCG..........................................................................................................................................................................................................................2011.001.00---------------------------------------------------------------1.00----------------------------------
.......................................................................GGGTTCCTGGGGGCATGA.................................................................................................................................................................1811.001.00-1.00------------------------------------------------------------------------------------------------
...........................................................................................AGGGGTGCGGGCGGGCCGGGGGA........................................................................................................................................231.000.00--------1.00-----------------------------------------------------------------------------------------
........................................................CTGGAGCGGCTTGGCGGG................................................................................................................................................................................1811.001.00--------1.00-----------------------------------------------------------------------------------------
....................................................GAGGCTGGAGCGGCTTTTT...................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00--------------------------------------
.........................................GAGGAGGAGGTGAGGCTGGAGCGGCTTT.....................................................................................................................................................................................281.000.00--------------------------------------------------------------------------------------1.00-----------
..................................................................................................CGGGCGGGCCGGGGGCTCGCG...................................................................................................................................2111.001.00---------------------------------------------------------------------------------------1.00----------
................................................................................................TGCGGGCGGGCCGGGGGCT.......................................................................................................................................1911.001.00----------------------------------1.00---------------------------------------------------------------
...............................................................GGCTTGGCGGGTTCCTGGGGGCA....................................................................................................................................................................2311.001.00-----------------------------------------------------------------------1.00--------------------------
....................................................GAGGCTGGAGCGGCTTTG....................................................................................................................................................................................181.000.00---1.00----------------------------------------------------------------------------------------------
......................................AGGGAGGAGGAGGTGAGGC.................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00----------------------------
....................................GGAGGGAGGAGGAGGTATGG..................................................................................................................................................................................................2001.001.00--------------------------------------------------------------1.00-----------------------------------
...........................................................................................AGGGGTGCGGGCGGGTGG.............................................................................................................................................181.000.00----------------------------------------------------------------------------------1.00---------------
..............ACGCTGTTGGAAATCTCGCGATGGAGG.................................................................................................................................................................................................................2711.001.00--------------------1.00-----------------------------------------------------------------------------
.................................................................CTTGGCGGGTTCCTGGGGGCATGAGAAG.............................................................................................................................................................2811.001.00----------------------------------------------------------------1.00---------------------------------
............................................GAGGAGGTGAGGCTGGAGCGGCT.......................................................................................................................................................................................2311.001.00----------------------------------------------------------------------------1.00---------------------
.....................................................AGGCTGGAGCGGCTTAGCG..................................................................................................................................................................................191.000.00---------------1.00----------------------------------------------------------------------------------
............................................................AGCGGCTTGGCGGGTTCCTG..........................................................................................................................................................................2011.001.00------------------------------------------1.00-------------------------------------------------------
........................................................................................AGAAGGGGTGCGGGCGGGCCGGGGGC........................................................................................................................................2611.001.00--------------------------------------------------------------------1.00-----------------------------
................................................................................................TGCGGGCGGGCCGGGGGCTCGTGGT.................................................................................................................................251.000.00------------------1.00-------------------------------------------------------------------------------
.....................TGGAAATCTCGCGATGG....................................................................................................................................................................................................................1711.001.00--1.00-----------------------------------------------------------------------------------------------
............................CTCGCGATGGAGGGA...............................................................................................................................................................................................................1511.001.00----------------------------------------------------------1.00---------------------------------------
...................................................................................................................................................................GGCTGCTCTGGCCTCCAGCCTGGCCTTCGG.........................................................3011.001.00----1.00---------------------------------------------------------------------------------------------
................................................................................GGGGCATGAGAAGGGGTG........................................................................................................................................................1821.001.00----------0.50------0.50--------------------------------------------------------------------------------
..................................ATGGAGGGAGGAGGAGGTGAGGCTGTTTT...........................................................................................................................................................................................291.000.00--1.00-----------------------------------------------------------------------------------------------
............................................GAGGAGGTGAGGCTGGAGCT..........................................................................................................................................................................................2031.001.00----------------------------1.00---------------------------------------------------------------------
................................................AGGTGAGGCTGGAGCGGCTTG.....................................................................................................................................................................................2111.001.00-----------------------------------------1.00--------------------------------------------------------
........................................................................................................................TCAGCTGAGGTCTCCTGTG...............................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------
................................................................GCTTGGCGGGTTCCTGGG........................................................................................................................................................................1811.001.00--1.00-----------------------------------------------------------------------------------------------
.............................................................................CTGGGGGCATGAGAAGGGGTGCGGGCGG.................................................................................................................................................2811.001.00------------------------------------------------------1.00-------------------------------------------
.............................................................................................GGGTGCGGGCGGGCCGGGGGCTCGCGGT.................................................................................................................................2811.001.00---------------------------------------------1.00----------------------------------------------------
.................CTGTTGGAAATCTCGCGAT......................................................................................................................................................................................................................1911.001.00-------------------1.00------------------------------------------------------------------------------
................................................................................GGGGCATGAGAAGGGGGG........................................................................................................................................................181.000.00---------------------------------------------------------1.00----------------------------------------
..........AAAAACGCTGTTGGAAATCTCGCGATGG....................................................................................................................................................................................................................2811.001.00------------------------1.00-------------------------------------------------------------------------
............................................................................................................................................................TGCGGGCGGCTGCTCTGGCCTCT.......................................................................231.000.00----------------------------------------1.00---------------------------------------------------------
.................................................................................................................................................CGGTGACCGGGTGCGGGCGGC....................................................................................2111.001.00-1.00------------------------------------------------------------------------------------------------
.....................................................................................................GCGGGCCGGGGGCTCGCGGTCAGCTGAGG........................................................................................................................2911.001.00-1.00------------------------------------------------------------------------------------------------
..............................................................CGGCTTGGCGGGTTCCTGGGGGGAT...................................................................................................................................................................251.000.00--------------------1.00-----------------------------------------------------------------------------
...............................................................................GGGGGCATGAGAAGGGGG.........................................................................................................................................................181.000.00-----------------------1.00--------------------------------------------------------------------------
......................................AGGGAGGAGGAGGTGAGGCTGG..............................................................................................................................................................................................2211.001.00------------------------------------------------1.00-------------------------------------------------
..................................................................TTGGCGGGTTCCTGGGGGCA....................................................................................................................................................................2011.001.00-----1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................GTGACCGGGTGCGGGCGG.....................................................................................1811.001.00-------1.00------------------------------------------------------------------------------------------
....................................GGAGGGAGGAGGAGGTGAGGCTGGAGCGGCTTG.....................................................................................................................................................................................3311.001.00--------------------------------------------------------------------------1.00-----------------------
.................................................GGTGAGGCTGGAGCGGCTTGGCG..................................................................................................................................................................................2311.001.00--------------1.00-----------------------------------------------------------------------------------
................................................................................GGGGCATGAGAAGGGGTGA.......................................................................................................................................................1921.001.00-----------1.00--------------------------------------------------------------------------------------
.....................................................................................ATGAGAAGGGGTGCGGG....................................................................................................................................................1711.001.00-----1.00--------------------------------------------------------------------------------------------
..................................................................................................................................TCTCCACTGTCGAGGCGG......................................................................................................1811.001.00----1.00---------------------------------------------------------------------------------------------
........................................................................................................GGCCGGGGGCTCGCGGT.................................................................................................................................1711.001.00-----------------------------------------------1.00--------------------------------------------------
....................................GGAGGGAGGAGGAGGTGAGGCTGGA.............................................................................................................................................................................................2511.001.00-------------------------------------1.00------------------------------------------------------------
.............................................AGGAGGTGAGGCTGGAGCGGCT.......................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................AGAGCTCCTGGTCGCCGCGCGG..............................2211.001.00---------------1.00----------------------------------------------------------------------------------
................................................AGGTGAGGCTGGAGCGGCT.......................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00------------------------------------------
.................................................................................................................................GTCTCCACTGTCGAGGC........................................................................................................1711.001.00--1.00-----------------------------------------------------------------------------------------------
.............AACGCTGTTGGAAATCTCGCGATGGA...................................................................................................................................................................................................................2611.001.00-----------------1.00--------------------------------------------------------------------------------
...................................................................................................................CGCGGTCAGCTGAGGTC......................................................................................................................1711.001.00-----1.00--------------------------------------------------------------------------------------------
....................................................GAGGCTGGAGCGGCTTTC....................................................................................................................................................................................181.000.00------------------------------1.00-------------------------------------------------------------------
..........................................................................................................CCGGGGGCTCGCGGTCAGCT............................................................................................................................2011.001.00------------------1.00-------------------------------------------------------------------------------
....TTTTTTAAAAACGCTGTTGGAAATCACG..........................................................................................................................................................................................................................281.000.00------------------------------------1.00-------------------------------------------------------------
..................................................................TTGGCGGGTTCCTGGGGGC.....................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------1.00--------------
.....................................................................................................................................................................CTGCTCTGGCCTCCAGCC...................................................................1811.001.00-------------------------------------------------------------------------------------1.00------------
...............................................................................................................................................................................................GGTGACCAGAGCTCCTGGT........................................1911.001.00----------------------------------1.00---------------------------------------------------------------
............................CTCGCGATGGAGGGAGGAGGA.........................................................................................................................................................................................................2111.001.00-----------------------------------1.00--------------------------------------------------------------
..............................................GGAGGTGAGGCTGGAGCGGTTTT.....................................................................................................................................................................................231.000.00--------------------1.00-----------------------------------------------------------------------------
...........................................................................................................CGGGGGCTCGCGGTCAG..............................................................................................................................1711.001.00--1.00-----------------------------------------------------------------------------------------------
.......................................GGGAGGAGGAGGTGAGGCTTTT.............................................................................................................................................................................................221.000.00---------------------------------------------------------------------------1.00----------------------
............................................GAGGAGGTGAGGCTGGAGC...........................................................................................................................................................................................1931.001.00---0.33------0.33---------------------------------------------------------------------------------0.33-----
.........................................................................................................................CAGCTGAGGTCTCCACTGTC.............................................................................................................2011.001.00----------------------------------------------------1.00---------------------------------------------
...................................................................................................................................CTCCACTGTCGAGGC........................................................................................................1511.001.00--1.00-----------------------------------------------------------------------------------------------
....................................GGAGGGAGGAGGAGGTATT...................................................................................................................................................................................................1901.001.00---------------------------------------1.00----------------------------------------------------------
............................................................................................................................................................TGCGGGCGGCTGCTCTGG............................................................................1811.001.00--------------------------1.00-----------------------------------------------------------------------
.....TTTTTAAAAACGCTGTTGGAAATCTCG..........................................................................................................................................................................................................................2711.001.00------------------------------------------------------------------------------------1.00-------------
......................................................................................................................................CACTGTCGAGGCGGTGAC..................................................................................................1811.001.00-1.00------------------------------------------------------------------------------------------------
.....................................GAGGGAGGAGGAGGTGAAAT.................................................................................................................................................................................................201.000.00--------1.00-----------------------------------------------------------------------------------------
.......................................................GCTGGAGCGGCTTGGCGGGTTTCT...........................................................................................................................................................................241.000.00-----------------------------------1.00--------------------------------------------------------------
............................................GAGGAGGTGAGGCTGGAGCGGC........................................................................................................................................................................................2211.001.00--------------------------------------------1.00-----------------------------------------------------
............................................................................................GGGGTGCGGGCGGGCCGGG...........................................................................................................................................1911.001.00-----------------1.00--------------------------------------------------------------------------------
...................................................................................................................................................GTGACCGGGTGCGGGCGGC....................................................................................1911.001.001.00-------------------------------------------------------------------------------------------------
........................................................................................................................................CTGTCGAGGCGGTGACCGGG..............................................................................................2011.001.00----1.00---------------------------------------------------------------------------------------------
...................................................TGAGGCTGGAGCGGCTTGGC...................................................................................................................................................................................2011.001.00------------------------------------------------------------1.00-------------------------------------
....................................GGAGGGAGGAGGAGGTGAGT..................................................................................................................................................................................................201.000.00-------------------------------------------------------------------------------1.00------------------
..........................................AGGAGGAGGTGAGGCTGGAG............................................................................................................................................................................................2031.001.00----0.67-------------------0.33-------------------------------------------------------------------------
............................................................................................GGGGTGCGGGCGGGCCGGGGA.........................................................................................................................................211.000.00------1.00-------------------------------------------------------------------------------------------
.......................................................................................................................................ACTGTCGAGGCGGTGACGGGG..............................................................................................211.000.00----1.00---------------------------------------------------------------------------------------------
..............................................................CGGCTTGGCGGGTTCCTG..........................................................................................................................................................................1821.001.00-----------0.50--------------------------0.50-----------------------------------------------------------
..........................................................................................................................................GTCGAGGCGGTGACCCGG..............................................................................................181.000.001.00-------------------------------------------------------------------------------------------------
...........................................................GAGCGGCTTGGCGGGTTC.............................................................................................................................................................................1811.001.00---------------------------------------------------1.00----------------------------------------------
...................GTTGGAAATCTCGCGATGGAGGGAGG.............................................................................................................................................................................................................2611.001.00-----------------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................GCCTTCGGTGACCAGAGCTC.............................................2011.001.00-1.00------------------------------------------------------------------------------------------------
..................................................GTGAGGCTGGAGCGGCTTTG....................................................................................................................................................................................201.000.00-------------------------------1.00------------------------------------------------------------------
.....TTTTTAAAAACGCTGTTGGAAATATAG..........................................................................................................................................................................................................................271.000.00------------------------------------1.00-------------------------------------------------------------
.....................................................AGGCTGGAGCGGCTTTGCG..................................................................................................................................................................................191.000.00-------------------1.00------------------------------------------------------------------------------
.....................................................AGGCTGGAGCGGCTTGGCT..................................................................................................................................................................................1911.009.00-------------------1.00------------------------------------------------------------------------------
......................................AGGGAGGAGGAGGTGAGGCTGGAGC...........................................................................................................................................................................................2511.001.00------------------------------------------------------------------------1.00-------------------------
........................................................................................AGAAGGGGTGCGGGCGGGCCG.............................................................................................................................................2111.001.00------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................TCCAGCCTGGCCTTCGG.........................................................1711.001.00-----1.00--------------------------------------------------------------------------------------------
......................................AGGGAGGAGGAGGTGAGGCTGGA.............................................................................................................................................................................................2311.001.00--------------------------1.00-----------------------------------------------------------------------
...........................................................................................AGGGGTGCGGGCGGGCA..............................................................................................................................................171.000.00----------------------------------------------------------------------1.00---------------------------
....................................GGAGGGAGGAGGAGGT......................................................................................................................................................................................................1601.001.00-------------1.00------------------------------------------------------------------------------------
..............................................................................TGGGGGCATGAGAAGCACA.........................................................................................................................................................191.000.00--------------------------------------------------------------------------------1.00-----------------
.............................................................GCGGCTTGGCGGGTTCCTGG.........................................................................................................................................................................2011.001.00---------------------------------------------------------------------------------1.00----------------
...............................................................................GGGGGCATGAGAAGGGGTG........................................................................................................................................................1911.001.00-----------1.00--------------------------------------------------------------------------------------
.......................................................................................................GGGCCGGGGGCTCGCGGTCAG..............................................................................................................................2111.001.00----1.00---------------------------------------------------------------------------------------------
............................................................................................GGGGTGCGGGCGGGCCGGGGGTTA......................................................................................................................................241.000.00--------------1.00-----------------------------------------------------------------------------------
.....................................GAGGGAGGAGGAGGTGAGG..................................................................................................................................................................................................1940.750.75-------------------------------------------0.25-------------------------------------------------0.250.25---
.............................................AGGAGGTGAGGCTGGAGC...........................................................................................................................................................................................1850.600.60-----------0.20-----------------------------------------------------------------------------------0.200.20-
.......................................................................................................................................................................................TGGCCTTCGGTGACCAG..................................................1720.500.50--0.50-----------------------------------------------------------------------------------------------
........................................GGAGGAGGAGGTGAGGCTG...............................................................................................................................................................................................1920.500.50-----------------------------------------------------------------------------------------0.50--------
..........................................AGGAGGAGGTGAGGCTGGAGC...........................................................................................................................................................................................2120.500.50-------------0.50------------------------------------------------------------------------------------
..................................ATGGAGGGAGGAGGAGGTGA....................................................................................................................................................................................................2020.500.50------------------------------------------0.50-------------------------------------------------------
........................................................................................................................................................CGGGTGCGGGCGGCTGC.................................................................................1720.500.50-------0.50------------------------------------------------------------------------------------------
...............................................GAGGTGAGGCTGGAGCG..........................................................................................................................................................................................1720.500.50----------------------------------------------------------------------------------------0.50---------
..........................................................................................AAGGGGTGCGGGCGG.................................................................................................................................................1520.500.50----------------------------------------0.50---------------------------------------------------------
..............................CGCGATGGAGGGAGGAGGAG........................................................................................................................................................................................................2020.500.50------------------------0.50-------------------------------------------------------------------------
..........................................................................................AAGGGGTGCGGGCGGGC...............................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------0.50------
.......................................................................................................................................................................................TGGCCTTCGGTGACCAGA.................................................1820.500.50-----0.50--------------------------------------------------------------------------------------------
.............................................AGGAGGTGAGGCTGGAGCG..........................................................................................................................................................................................1920.500.50-------------------------0.50------------------------------------------------------------------------
..............................CGCGATGGAGGGAGGAG...........................................................................................................................................................................................................1720.500.50-----0.50--------------------------------------------------------------------------------------------
................................................................................................TGCGGGCGGGCCGGGGG.........................................................................................................................................1720.500.50---------------------------------------0.50----------------------------------------------------------
.........................................GAGGAGGAGGTGAGGCTG...............................................................................................................................................................................................1820.500.50------------------------------------------------------------------------------------------0.50-------
.................................GATGGAGGGAGGAGGAGGTGA....................................................................................................................................................................................................2120.500.50-------------0.50------------------------------------------------------------------------------------
...............................................................................................GTGCGGGCGGGCCGGGG..........................................................................................................................................1730.330.33-0.33------------------------------------------------------------------------------------------------
.....................................GAGGGAGGAGGAGGTGAG...................................................................................................................................................................................................1860.170.17-------------------------------------------0.17------------------------------------------------------
.....................................GAGGGAGGAGGAGGTGAGAT.................................................................................................................................................................................................2060.170.17-------------------------------------------------------------------------------------------------0.17
....................................GGAGGGAGGAGGAGGTGA....................................................................................................................................................................................................1870.140.14------------------------0.14-------------------------------------------------------------------------

Antisense strand
TTTTTTTTTTAAAAACGCTGTTGGAAATCTCGCGATGGAGGGAGGAGGAGGTGAGGCTGGAGCGGCTTGGCGGGTTCCTGGGGGCATGAGAAGGGGTGCGGGCGGGCCGGGGGCTCGCGGTCAGCTGAGGTCTCCACTGTCGAGGCGGTGACCGGGTGCGGGCGGCTGCTCTGGCCTCCAGCCTGGCCTTCGGTGACCAGAGCTCCTGGTCGCCGCGCGGTGCCCGCGCCGGTTCTGGCGATCCTTGTCG
....................................................((((((..(((((((..(((((..(((((..((((........)))).......)))))..))))))))).)))..))))))..((((....))))......................................................................................................
..................................................51...............................................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038863(GSM458546)
MM603. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040011(GSM532896)
G529T. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
.................................................................................................................................................................................................................................AAGGATCGCCAGAACCGGCGC.... 2112.002.00-------2.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................GCGCGGCGACCAGGAGCTCTGGT................................ 2312.002.00--2.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AGGATCGCCAGAACCGG..... 1712.002.00--2.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................GAAGGCCAGGCTGGAGGCCAG........................................................... 2112.002.00---------------------------2.00----------------------------------------------------------------------
....................................................................................................................................................................................................................................AAGGATCGCCAGAACCGG.... 1812.002.002.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................ACAAGGATCGCCAGAACCGGC.. 2111.001.00--------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................CTCGACAGTGGAGACCTCA.......................................................................................................... 1911.001.00--------------------------------------------------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................ACAAGGATCGCCAGAAC.. 1711.001.00-------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................CAGGCTGGAGGCCAGAGCAGC................................................................. 2111.001.00-----------------------------------------------------------------------------1.00--------------------
.................................................................................................................................................................CCGAAGGCCAGGCTGGAGGCCAGAGCAGCCGC......................................................... 3211.001.00-----1.00--------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AACCGGCGCGGGCACCGC................ 1811.001.00-----1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AAGGATCGCCAGAACCG.... 1711.001.00--1.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CAAGGATCGCCAGAACCGGC... 2011.001.00-1.00------------------------------------------------------------------------------------------------
...................................................................................................GGGCGGGCCGGGGGCTTC..................................................................................................................................... 181.000.00-------------------------------------------------------------------1.00------------------------------
......................................................................................................................................................................................................................................GGTTCTGGCGATCCTTTGAA 201.000.00---------------------1.00----------------------------------------------------------------------------