ID: uc003jbl.2_intron_9_0_chr5_886823_r.3p
GENE: (4)
chr5:886773-887022-


(1)
AGO3.ip 		(2)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(5)
HELA 		(3)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CCACCTCCCGCTGCTCCGCCGTGGAAAGTTAGCTCTTAGGCCAGGTGAGGCTGTGACCATCCCCATCCCATCCCATCGTCACGGCACCCTGGCTGTGAGGGAGAGGTAAATCCCTGCTGCTCTGTCCTTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTCAGCAGGCAGCTCTTTTGGGCAATGAAGATACAGCTGTTGAGGAACCTGTCCC
..................................................................................................................................................((((..(((..((((.....((((((..........))))))....))))..)))..))))...........................................
...............................................................................................................................................144............................................................207.........................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
....................................................................................................................................................GTTAGCTTTGAAGCGCAG....................................................................................18112.0012.00---12.00-------------------------------
...............................................................................................................................TTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTC....................................................71111.0011.0011.00----------------------------------
...............................................................................................................................TTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTCAG..................................................73110.0010.00--10.00--------------------------------
...................................................................................................................................................................................CAGGACATGGATTTTTCTCAGCAG...............................................2419.009.00-7.00------1.00-----------1.00--------------
...............................................................................................................................TTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTCAGCAGA..............................................7718.007.008.00----------------------------------
...............................................................................................................................TTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTCAGCAG...............................................7617.007.00--7.00--------------------------------
................................................................................................................................TTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTC....................................................7015.005.005.00----------------------------------
...............................................................................................................................................................................TATGCAGGACATGGATTTTT.......................................................2015.005.00-4.00--------------------1.00------------
...............................................................................................................................................CGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCT.....................................................5415.005.005.00----------------------------------
...................................................................................................................................................................................CAGGACATGGATTTTTCTCAGCA................................................2315.005.00-5.00---------------------------------
...................................................................................................................................................................................CAGGACATGGATTTTTCTCAGC.................................................2214.004.00-3.00----------------------1.00----------
...............................................................................................................................................................................TATGCAGGACATGGATTTTTCTC....................................................2313.003.00----3.00------------------------------
.....................................................................ATCCCATCGTCACGGCACC..................................................................................................................................................................1912.002.00------------1.00------1.00---------------
..............................................................................................................................................................................................................................AAGATACAGCTGTTGAGGA.........1912.002.00--------------------------1.00------1.00-
....................................................................................................................................GATTCTAGGAGCGGCTGTTAGC................................................................................................2212.002.00-2.00---------------------------------
..................................................................................................................................................................................................................................TACAGCTGTTGAGGAACCTGT...2112.002.00-2.00---------------------------------
............................................................................................................................................................................................................................TGAAGATACAGCTGTTGAGGAACCTG....2612.002.00-------2.00---------------------------
..............................................................................................................................................................................TTATGCAGGACATGGATTTT........................................................2012.002.00-2.00---------------------------------
....................................................................................................................................................................................AGGACATGGATTTTTCTCAGCAG...............................................2312.002.00-----2.00-----------------------------
..........................................................ATCCCCATCCCATCCCATCCCA..........................................................................................................................................................................221.000.00-----------------------1.00-----------
..................................................................................................................................................................................................................................TACAGCTGTTGAGGAACC......1811.001.00-------------------------1.00---------
.........................................................................................................................................................................................................................CAATGAAGATACAGCTGTTGAGG..........2311.001.00----------------1.00------------------
...................................................................................................................................................................................................................TTTGGGCAATGAAGATACAGCTGTTGAGGAACCTG....3511.001.00--------------------------------1.00--
...................................................................................................................................................................................CAGGACATGGATTTTTCTCAG..................................................2111.001.00------------------------------1.00----
..................................................................................................................................................................................GCAGGACATGGATTTTTCTCAG..................................................2211.001.00-1.00---------------------------------
....................................................................................................................................................................................AGGACATGGATTTTTCTCAGCAGG..............................................2411.001.00-1.00---------------------------------
....................................................................................................................................................GTTAGCTTTGAAGCGCAGC...................................................................................1911.001.00---------------1.00-------------------
..................................................................................................................................................................................GCAGGACATGGATTTGATT.....................................................191.000.00------------------1.00----------------
......................................................................................................................................................................................................AGCAGGCAGCTCTTTTAGC.................................191.000.00--------------1.00--------------------
...............................................................................................................................................................................................................................AGATACAGCTGTTGAGGA.........1811.001.00-----------------------------1.00-----
..................................................................................................................................................................................GCAGGACATGGATTTTTCTCAGA.................................................2311.001.00-----------------1.00-----------------
..................................................................................................................................................................................................................................TACAGCTGTTGAGGAACCTGTAAG2411.002.00---------------------------1.00-------
.....................................................................................................................................................................................................................TGGGCAATGAAGATACAGCTG................2111.001.00---------1.00-------------------------
..................................................................................................................................................................................................TCTCAGCAGGCAGCTCTTTTGGGC................................2411.001.00-----------1.00-----------------------
..........................................................................................................................................................................................................................AATGAAGATACAGCTGTTGAGGAACCTGTCCC3211.001.00------1.00----------------------------
...................................................................................................................................................................................................................................ACAGCTGTTGAGGAACCTGT...2011.001.00----------------------------1.00------
.................................................................................................................................................................................TGCAGGACATGGATTTTTCTCA...................................................2211.001.00-1.00---------------------------------
................................................................................................................................................................................ATGCAGGACATGGATTTTTCTCAGCAGGCAG...........................................3111.001.00------1.00----------------------------
..........................................AGGTGAGGCTGTGACCA...............................................................................................................................................................................................1711.001.00-------------1.00---------------------
...................................................................................................................................................................................CAGGACATGGATTTTTCTCAGCAGGCA............................................2711.001.001.00----------------------------------
...............................................................................................................................................................................TATGCAGGACATGGATTTTTC......................................................2111.001.00-1.00---------------------------------
...........................................................................................................................................................................................................................ATGAAGATACAGCTGTTGAGGAA........2311.001.00-------------------------------1.00---

Antisense strand
CCACCTCCCGCTGCTCCGCCGTGGAAAGTTAGCTCTTAGGCCAGGTGAGGCTGTGACCATCCCCATCCCATCCCATCGTCACGGCACCCTGGCTGTGAGGGAGAGGTAAATCCCTGCTGCTCTGTCCTTTCTGATTCTAGGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTTTCTCAGCAGGCAGCTCTTTTGGGCAATGAAGATACAGCTGTTGAGGAACCTGTCCC
..................................................................................................................................................((((..(((..((((.....((((((..........))))))....))))..)))..))))...........................................
...............................................................................................................................................144............................................................207.........................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
......................................................................................................................GCTCTGTCCTTTCTGTCTT................................................................................................................. 191.000.00----------1.00------------------------
................................................................................................................CCTGCTGCTCTGTCCTAGG....................................................................................................................... 191.000.00---------------------1.00-------------
...CGGAGCAGCGGGAGG........................................................................................................................................................................................................................................ 1570.290.29----------------------------------0.29