ID: uc003ixc.1_intron_3_0_chr4_185991185_f.3p
GENE: BC043280(4)
chr4:185992522-185992771+


(1)
AGO1.ip 		(8)
BREAST 		(8)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(8)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
UTERUS

Sense strand
AATTAGATGCAAACTTTACATTTAAAACTGCATTGTTCCCCTTTAATCTGGCCACCATCCGAGTGGTGATCTGGATGTTAGAGAAGAGATGAATGGGAGACATTGGCAGGGATTGAAGCTTGGGGATGAATGTGGAAATGTAGAATGGATGTTTCTTTTTTTTGGCTTTGAGTTGACTGTTGTTTCTGTCTGTTTTTTAGAACTGATCCGAGAGGACAGGGAAGTCAGTGTGGGCGGCTCTAAGGAGCCT
..............................................................................................((((((((..(((((..((...((((..(((..(((...((((((((.......))))))))...)))...)))..)))).......))..)))))))))))))....................................................
..............................................................................................95.............................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................ACATTGGCAGGGATTTCCA....................................................................................................................................1923.000.0012.002.00-1.00-2.00--1.00--------1.00---1.00--1.00------1.00--1.00--
...................................................................................................ACATTGGCAGGGATTTCC.....................................................................................................................................1818.000.007.003.00-1.00-----1.00-----1.001.00--1.00--1.00-----1.00----1.00---
...................................................................................................ACATTGGCAGGGATTTC......................................................................................................................................175.000.003.001.00---------1.00-------------------------
...................................................................................................................................................................................TTGTTTCTGTCTGTTTTTTTGTT................................................235.000.00--3.00-2.00--------------------------------
...................................................................................................ACATTGGCAGGGATTACCA....................................................................................................................................195.000.003.00------------------------1.00-1.00---------
....................................................................................................................................TGGAAATGTAGAATGCTG....................................................................................................183.000.00----------2.00---------------------1.00----
...................................................................................................ACATTGGCAGGGATTTTCA....................................................................................................................................192.000.00---1.00-----1.00---------------------------
.......................................................................................................................................................TTTCTTTTTTTTGGCTTG.................................................................................182.000.00--1.00-1.00--------------------------------
...................................................................................................ACATTGGCAGGGATTAA......................................................................................................................................171.000.00-----------------------------1.00-------
...................................................................................................ACATTGGCAGGGATTTGC.....................................................................................................................................181.000.00-----------------------------------1.00-
.........................................................................................................................................................TCTTTTTTTTGGCTTTGCGC.............................................................................201.000.00------1.00------------------------------
...................................................................................................ACATTGGCAGGGATTTCT.....................................................................................................................................181.000.00------------------------------1.00------
.........................................................................................................................................................TCTTTTTTTTGGCTTCCCG..............................................................................191.000.00--1.00----------------------------------
........................................................................................................................................................TTCTTTTTTTTGGCTCATG...............................................................................191.000.00------1.00------------------------------
...................................................................................................ACATTGGCAGGGATTCC......................................................................................................................................171.000.001.00------------------------------------
...................................................................................................ACATTGGCAGGGATTACT.....................................................................................................................................181.000.00-------------1.00-----------------------
...................................................................................................ACATTGGCAGGGATTTTC.....................................................................................................................................181.000.00---1.00---------------------------------
....................................................................................................................................................................................TGTTTCTGTCTGTTTTTTTGTT................................................221.000.00--1.00----------------------------------
...................................................................................................ACATTGGCAGGGATTGCGAC...................................................................................................................................201.000.00------------------1.00------------------
...................................................................................................ACATTGGCAGGGATTACGA....................................................................................................................................191.000.00--------1.00----------------------------
...................................................................................................ACATTGGCAGGGATTTTGA....................................................................................................................................191.000.00--------------1.00----------------------
...................................................................................................ACATTGGCAGGGATTTGCA....................................................................................................................................191.000.00---1.00---------------------------------
.........................AACTGCATTGTTCCCCTATCA............................................................................................................................................................................................................211.000.00--------------------1.00----------------
......................................CCCTTTAATCTGGCCATTT.................................................................................................................................................................................................191.000.00------------1.00------------------------
...................................................................................................ACATTGGCAGGGATTTCGA....................................................................................................................................191.000.00-----1.00-------------------------------
...................................................................................................ACATTGGCAGGGATTACC.....................................................................................................................................181.000.00-1.00-----------------------------------
...............................ATTGTTCCCCTTTAAT...........................................................................................................................................................................................................1640.250.25------0.25------------------------------

Antisense strand
AATTAGATGCAAACTTTACATTTAAAACTGCATTGTTCCCCTTTAATCTGGCCACCATCCGAGTGGTGATCTGGATGTTAGAGAAGAGATGAATGGGAGACATTGGCAGGGATTGAAGCTTGGGGATGAATGTGGAAATGTAGAATGGATGTTTCTTTTTTTTGGCTTTGAGTTGACTGTTGTTTCTGTCTGTTTTTTAGAACTGATCCGAGAGGACAGGGAAGTCAGTGTGGGCGGCTCTAAGGAGCCT
..............................................................................................((((((((..(((((..((...((((..(((..(((...((((((((.......))))))))...)))...)))..)))).......))..)))))))))))))....................................................
..............................................................................................95.............................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................CTGGATGTTAGAGAAGAGC................................................................................................................................................................. 191.000.00----1.00--------------------------------
................................................................................................................................................................................................................CGAGAGGACAGGGAAACCA....................... 191.000.00-----------------------1.00-------------
...............................................................................................................................................................................................................................GTCAGTGTGGGCGGCTCACA....... 201.000.00-------1.00-----------------------------
.........CAAACTTTACATTTAAATGG............................................................................................................................................................................................................................. 201.000.00--------------------------1.00----------
........................................................................................................................TGGGGATGAATGTGGGAAG............................................................................................................... 191.000.00-------1.00-----------------------------
......................................................................CTGGATGTTAGAGAAGCGC................................................................................................................................................................. 191.000.00----1.00--------------------------------
...........................................................................................................................................................................................................................CGCCCACACTGACTTCC.............. 1720.500.50------------------------------------0.50