ID: uc003ita.3_intron_3_0_chr4_174254821_r.5p
GENE: HMGB2(1)
chr4:174255197-174255446-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(11)
B-CELL
(1)
BRAIN
(14)
BREAST
(42)
CELL-LINE
(5)
CERVIX
(2)
FIBROBLAST
(3)
HEART
(4)
HELA
(1)
KIDNEY
(5)
LIVER
(2)
OTHER
(1)
RRP40.ip
(11)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
ACTCTGAGGAAAAGCTCGCACCAGGCAAGAATACCCTCCAATACCCTCGGGTTCGTGGACCTGCCTTTCCCCATTCCCTCAGAGCCTCTACTCGGTCTCGGCGCAGTGGCTCTCGGGGTCTGACCCGGCGAGCGGCATTTGGGGTGCGGGCCGGCGAGGGCTGGGTCTGTGGAGGGCCGGCGGGCAGTCGGAGGAGGCGGAAACTGCCCCTGACCGGGCCCGGTTCTGGGAGTTTTCAATGTCGGTCACG
.........................................................................................................................................(((.((.(((..((((((..((((...)))).......))))))..))).)).)))..(((((...)))))..........................................
........................................................................................................................................137.....................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038855(GSM458538)
D10. (cell line)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR343334SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029124(GSM416753)
HeLa. (hela)
GSM532876(GSM532876)
G547T. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
.............................................................................................................................................GGGTGCGGGCCGGCGGGGG..........................................................................................19511.801.200.40-4.60--1.00-0.200.20-------0.601.400.400.80------0.20---------------------------------------------0.60-------------0.200.20-0.20---0.20----0.20-0.20-0.20---
.............................................................................................................................................GGGTGCGGGCCGGCGAAAAA.........................................................................................206.000.001.00---------1.00----------------------1.00--1.00------------1.00-1.00------------------------------------------------------
................................ACCCTCCAATACCCTCGGG.......................................................................................................................................................................................................1916.006.00-6.00--------------------------------------------------------------------------------------------------------
.........AAAAGCTCGCACCAGGCAAGAAT..........................................................................................................................................................................................................................2316.006.006.00---------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGGAGGAGGCGGAAACA.............................................194.000.00----4.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................GCTGGGTCTGTGGAGGGC.........................................................................1813.003.00--------2.001.00------------------------------------------------------------------------------------------------
...........................................................................................................................................................GAGGGCTGGGTCTGTGGAGGGCA........................................................................233.000.00----------1.00---------------------------------------1.00----------------------1.00--------------------------------
......................................................................................................................TCTGACCCGGCGAGCGGC..................................................................................................................1812.002.00----------------------1.00-----------------------------------------------1.00-----------------------------------
...........................................................................................................................................................GAGGGCTGGGTCTGTGGAGGGCC........................................................................2312.002.00---------------------1.00-----------------------1.00------------------------------------------------------------
.....................................................................................................................................................................................GGGCAGTCGGAGGAGGCGGA.................................................2012.002.00---2.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAA............................................................................................172.000.00------------------------1.00-------------1.00-------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAGTA..........................................................................................192.000.00------2.00---------------------------------------------------------------------------------------------------
....................CCAGGCAAGAATACCCTC....................................................................................................................................................................................................................1812.002.00-------------------------1.00-------------------------------------------------1.00------------------------------
...................ACCAGGCAAGAATACCCTCC...................................................................................................................................................................................................................2012.002.00-------2.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGAA...........................................................................................1851.401.200.20--0.20---0.20----------------0.20---------------------------------------------------0.20------------------------0.20---0.20
.............................................................................................................................................GGGTGCGGGCCGGCGGAT...........................................................................................1851.201.20-----1.00---------------------------------------------------------------------------------------------0.20------
.............................................................................................................................................GGGTGCGGGCCGGCG..............................................................................................1551.201.20------0.20--0.20-------0.20-------0.20----------------------------------------------0.20----------0.20----------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAAGAA.........................................................................................201.000.00---------------------------1.00------------------------------------------------------------------------------
................CGCACCAGGCAAGAATACCCTCCAA.................................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------------1.00-------------------------------
.....GAGGAAAAGCTCGCACCAGGC................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------1.00----------------------------------------------
............................................................................................................................................GGGGTGCGGGCCGGCGGGG...........................................................................................191.000.00------------------------------------------------------------1.00---------------------------------------------
.........................................................................................................................................................................................AGTCGGAGGAGGCGGTC................................................171.000.00-----------1.00----------------------------------------------------------------------------------------------
........................................................................................................................................................................................CAGTCGGAGGAGGCGGAA................................................1811.001.00--------------------1.00-------------------------------------------------------------------------------------
............................................................................................................................................................AGGGCTGGGTCTGTGGAGGGC.........................................................................2111.001.00---1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GCTGGGTCTGTGGAGGGCCGGCGGGCAG...............................................................2811.001.00---------------------------------------------------------------1.00------------------------------------------
.....................................................................................................................................................GCCGGCGAGGGCTGGGTCTG.................................................................................2011.001.00------------------------------------------------------1.00---------------------------------------------------
...................ACCAGGCAAGAATACCCTCCAA.................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------1.00--------------------------------------
............................GAATACCCTCCAATACCCTCGGGTTC....................................................................................................................................................................................................2611.001.00-----------------------------------------1.00----------------------------------------------------------------
.....................................................................................................................................................GCCGGCGAGGGCTGGGC....................................................................................171.000.00-----------1.00----------------------------------------------------------------------------------------------
........................................................................................................................................................GGCGAGGGCTGGGTCTGTGGA.............................................................................2111.001.00---------1.00------------------------------------------------------------------------------------------------
...................................CTCCAATACCCTCGGG.......................................................................................................................................................................................................1611.001.00---------------1.00------------------------------------------------------------------------------------------
........GAAAAGCTCGCACCAGGTGGA.............................................................................................................................................................................................................................211.000.00-----------------------------1.00----------------------------------------------------------------------------
..........................................ACCCTCGGGTTCGTGGACC.............................................................................................................................................................................................1911.001.00------------1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................GAGGGCTGGGTCTGTGGAGGGCAA.......................................................................241.000.00-----------------------1.00----------------------------------------------------------------------------------
.......................................................................................................................................................................................GCAGTCGGAGGAGGCGGA.................................................1811.001.00--------------------------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................GGAGGGCCGGCGGGCTCG..............................................................181.000.00--------------------------------------------------------------------1.00-------------------------------------
.........................................TACCCTCGGGTTCGTGGACCTG...........................................................................................................................................................................................2211.001.00------------------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAATAA.........................................................................................201.000.00----------------------------------------------------------1.00-----------------------------------------------
.......................................................................................................................................................CGGCGAGGGCTGGGTCTG.................................................................................1811.001.00---------------1.00------------------------------------------------------------------------------------------
.................................................................................GAGCCTCTACTCGGTCTCGG.....................................................................................................................................................2011.001.00--------------1.00-------------------------------------------------------------------------------------------
..TCTGAGGAAAAGCTCGCA......................................................................................................................................................................................................................................1821.001.00--------------------------------------------------------------------------------0.50-0.50-----------------------
.......................................................................................................................................................................................................................................GTTTTCAATGTCGGTCACGAGA221.000.00-------------------------------------1.00--------------------------------------------------------------------
...CTGAGGAAAAGCTCGCACCAGGCAAGAATA.........................................................................................................................................................................................................................3011.001.00--------------------------------1.00-------------------------------------------------------------------------
..........................................................................................................................................................................................GTCGGAGGAGGCGGAAACTGCCCCTGACCGGGC...............................3311.001.00----------------------------------------------1.00-----------------------------------------------------------
..................CACCAGGCAAGAATACCCTCCAATA...............................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------1.00----------------------------------
............AGCTCGCACCAGGCAAGAATACC.......................................................................................................................................................................................................................2311.001.00--------------------------------------------1.00-------------------------------------------------------------
............................................................................................................................................................................................CGGAGGAGGCGGAAACTGC...........................................1911.001.00----------------------------------------1.00-----------------------------------------------------------------
.........AAAAGCTCGCACCAGGCAAGA............................................................................................................................................................................................................................2111.001.00-------------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................................GGCGAGGGCTGGGTCTGGAGT.............................................................................211.000.00--------------------------------------------------------------1.00-------------------------------------------
.............................................................................................................................................................GGGCTGGGTCTGTGGAGGGCCGGT.....................................................................241.000.00-------------------------------1.00--------------------------------------------------------------------------
.........................CAAGAATACCCTCCAATA...............................................................................................................................................................................................................1811.001.00----------------------------------------------------------------1.00-----------------------------------------
.......................................................................................................................................................CGGCGAGGGCTGGGTCTGTG...............................................................................2011.001.00------------------------------------------------------------------1.00---------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGACG...........................................................................................181.000.00----------------------------------------------------1.00-----------------------------------------------------
.......................................................................................................................................................CGGCGAGGGCTGGGTCTGTGGAGG...........................................................................2411.001.00--------------1.00-------------------------------------------------------------------------------------------
.........................................................................................ACTCGGTCTCGGCGCAGTGGCT...........................................................................................................................................2211.001.00---1.00------------------------------------------------------------------------------------------------------
.....................................CCAATACCCTCGGGTTCGTGGACCT............................................................................................................................................................................................2511.001.00------------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................TGTGGAGGGCCGGCGGGCAGTCGGAGG........................................................2711.001.00----------------------------------1.00-----------------------------------------------------------------------
..............................................................................................................................................................................GGCCGGCGGGCAGTCCGT..........................................................181.000.00-----------------------------------1.00----------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAGTT..........................................................................................191.000.00-----------------------------------------------------1.00----------------------------------------------------
.................................................................................GAGCCTCTACTCGGTCTCGGC....................................................................................................................................................2111.001.00-------------------------------------------------------------1.00--------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAAAGA.........................................................................................201.000.00---------------------------------------------------------1.00------------------------------------------------
..................................................................................................CGGCGCAGTGGCTCTCGG......................................................................................................................................1821.001.00-------------------1.00--------------------------------------------------------------------------------------
..........................................ACCCTCGGGTTCGTGGACCTGCCTT.......................................................................................................................................................................................2511.001.00----------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGAAAGC.........................................................................................201.000.00---------------------------------------1.00------------------------------------------------------------------
....................................................................................................................................................................GTCTGTGGAGGGCCGGGGG...................................................................191.000.00------------------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................TGGGTCTGTGGAGGGCCG.......................................................................1811.001.00-------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGGAA..........................................................................................1950.801.200.20-0.20--------------0.20-------------------------------------------------------------------0.20--------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGT............................................................................................1750.801.20--0.20--0.40----------------------------------------------------------------------------------------0.20-----------
.............................................................................................................................................GGGTGCGGGCCGGCGGAGA..........................................................................................1950.601.20----------------------------------------------------------------------------0.40---------------------------0.20-
.............................................................................................................................................GGGTGCGGGCCGGCGGGAT..........................................................................................1950.601.20-------------------------------------------------------------------------------------------0.20-----0.20-----0.20--
.............................................................................................................................................GGGTGCGGGCCGGCGGGGA..........................................................................................1950.601.20-----0.20----------0.20-0.20---------------------------------------------------------------------------------------
..............CTCGCACCAGGCAAG.............................................................................................................................................................................................................................1520.500.50-----------------------------------------------------------------------------0.50----------------------------
...CTGAGGAAAAGCTCGCACCAG..................................................................................................................................................................................................................................2120.500.50------------------------------------------------------------------------------0.50---------------------------
................................................................................................CTCGGCGCAGTGGCTCT.........................................................................................................................................1720.500.50--------------------0.50-------------------------------------------------------------------------------------
..TCTGAGGAAAAGCTCGC.......................................................................................................................................................................................................................................1720.500.50---------------------0.50------------------------------------------------------------------------------------
.CTCTGAGGAAAAGCTCGC.......................................................................................................................................................................................................................................1820.500.50---------------------------------------------------------------------------------0.50------------------------
.CTCTGAGGAAAAGCTCGCA......................................................................................................................................................................................................................................1920.500.50-------------------------------------------------------------------------------0.50--------------------------
.....GAGGAAAAGCTCGCACCAG..................................................................................................................................................................................................................................1920.500.50-----------------------0.50----------------------------------------------------------------------------------
......AGGAAAAGCTCGCACCAG..................................................................................................................................................................................................................................1820.500.50----------------------0.50-----------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGAAT..........................................................................................1950.401.20---------------------------0.20--------------------------------------------------------0.20---------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGAAA..........................................................................................1950.401.20------------------------------------------------------------------------------------------0.20-----0.20---------
.............................................................................................................................................GGGTGCGGGCCGGCGGGA...........................................................................................1850.401.200.20---------------------------------------------------------------------------0.20-----------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGCG...........................................................................................1850.401.20-----------------0.200.20---------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGGTT..........................................................................................1950.201.20------------------------------------------------------------------------0.20---------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGAGT..........................................................................................1950.201.20--------------------------------------------------------------------------------------------0.20-------------
.............................................................................................................................................GGGTGCGGGCCGGCGGTGT..........................................................................................1950.201.20--0.20-------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGTG............................................................................................1750.201.20----------------------------------------------------------------------------------------0.20-----------------
.............................................................................................................................................GGGTGCGGGCCGGCGGGT...........................................................................................1850.201.20----0.20-----------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGGTC..........................................................................................1950.201.20----------------0.20-----------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGTGG...........................................................................................1850.201.20-----------------------------------------------------------------------------------------------0.20----------
.............................................................................................................................................GGGTGCGGGCCGGCGGATA..........................................................................................1950.201.20------------------------0.20---------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGTGGT..........................................................................................1950.201.20------------------------------------------------------------------------------------0.20---------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGTG...........................................................................................1850.201.20--0.20-------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGA............................................................................................1750.201.20-----------------------------------------------------------------------------------0.20----------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGAG...........................................................................................1850.201.20-----0.20----------------------------------------------------------------------------------------------------
.............................................................................................................................................GGGTGCGGGCCGGCGGCGT..........................................................................................1950.201.20-------------------------------------------------------------------------------------0.20--------------------

Antisense strand
ACTCTGAGGAAAAGCTCGCACCAGGCAAGAATACCCTCCAATACCCTCGGGTTCGTGGACCTGCCTTTCCCCATTCCCTCAGAGCCTCTACTCGGTCTCGGCGCAGTGGCTCTCGGGGTCTGACCCGGCGAGCGGCATTTGGGGTGCGGGCCGGCGAGGGCTGGGTCTGTGGAGGGCCGGCGGGCAGTCGGAGGAGGCGGAAACTGCCCCTGACCGGGCCCGGTTCTGGGAGTTTTCAATGTCGGTCACG
.........................................................................................................................................(((.((.(((..((((((..((((...)))).......))))))..))).)).)))..(((((...)))))..........................................
........................................................................................................................................137.....................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR038855(GSM458538)
D10. (cell line)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR343334SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029124(GSM416753)
HeLa. (hela)
GSM532876(GSM532876)
G547T. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
...................................................................CCGAGTAGAGGCTCTGAGGGAATGGGGA........................................................................................................................................................... 2811.001.00---------------------------------------------------------------------1.00------------------------------------
..........................................................................................................................................................................GGAGGGCCGGCGGGCTCC.............................................................. 181.000.00------------------------------1.00---------------------------------------------------------------------------
................................................................................................................................................CAGCCCTCGCCGGCCCGCA....................................................................................... 1911.001.00-------------------------------------------1.00--------------------------------------------------------------
...........................................................................................................................................................................CTCCGACTGCCCGCCGGCCCTC......................................................... 2211.001.00-----------------------------------------------------------------1.00----------------------------------------
................................................................................................................................................TGCGGGCCGGCGAGGGCGCG...................................................................................... 201.000.00-----------------------------------------------1.00----------------------------------------------------------
..............................................................GCCTTTCCCCATTCCCTTGTC....................................................................................................................................................................... 211.000.00-------------------------------------------------------1.00--------------------------------------------------
........................................................................................................................................................................................AGTTTCCGCCTCCTCCGACTG............................................. 2111.001.00--------------------------------------------------------1.00-------------------------------------------------
.......................................................................................................................................................GACCCAGCCCTCGCCG................................................................................... 1630.670.67----------------------------0.67-----------------------------------------------------------------------------
....................................................................................................................................................GACCCAGCCCTCGCCGGCC................................................................................... 1920.500.50----------------------------0.50-----------------------------------------------------------------------------