ID: uc003isy.1_intron_3_0_chr4_174087451_r
GENE: BC040577(3)
chr4:174087401-174087845-


(1)
B-CELL 		(4)
BRAIN 		(9)
BREAST 		(17)
CELL-LINE 		(5)
CERVIX 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGGGACCCAGGAATCTCCTGTTAATCAGTACCCTGGTGATTTTGATCCAGGTAATCTGGGCACCACCTTTGGAGAAACACTGAAAGGAAGCAAGGTTGCGGGGGGTGGTTGGGAAAAGTCTTATATGGATATCTTTGGAAGACAGAAATAGGCTCATTTATGGACTCAACTTGAACTGTTCAGAAGTGAGGTGGACTCCTTTTCTTTTTTATTTATTTTTTTTTTGAGTTGAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACATCCATAGCTCACTGCAGCCTGGAACTCCTGGGCTCAAGTGATCTTCCCACCTCAACCTCCCGAGTAGCTAGGACCACATGTGTGAGTCATCATGCCCAGCTAATTTTTTTTTTATTTTTTGTAGAGACGGGGTCTATTATCTGGTCCTGTTGTCAAGGCTGGTCTCAAACTCCT
..............................................................................(((.((((((((((....))).((((((...........(((((....((....))....))))).........(((((((.(((((............))))).)))))))....))))))..................))))))).)))........................................................................................................................................................................................................................
...........................................................................76.......................................................................................................................................................229......................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040022(GSM532907)
G575N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTTATG............................................................................................................................................................................................................................227.000.00--1.004.00---2.00-----------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTTATTG.........................................................................................................................................................................................................................265.000.00--4.001.00---------------------------------------------------
.........................................................................................................................................................................................................TTCTTTTTTATTTATTTTTTTTTTATTG........................................................................................................................................................................................................................284.000.00--1.003.00---------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGCG.........................................................................................................................................................................................................................................................................................................................................................2013.003.00----2.00----1.00---------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGCTC........................................................................................................................................................................................................................................................................................................................................................2113.001.00---------1.00---1.00--------------------------1.00--------------
................................................................................TGAAAGGAAGCAAGGTTGCGC........................................................................................................................................................................................................................................................................................................................................................2113.003.00--------1.00-1.00--------1.00-----------------------------------
................................................................................TGAAAGGAAGCAAGGTTACT.........................................................................................................................................................................................................................................................................................................................................................202.000.00----1.00------------------1.00-------------------------------
................................................................................TGAAAGGAAGCAAGGTTGCGCT.......................................................................................................................................................................................................................................................................................................................................................2212.003.00----1.00----1.00---------------------------------------------
............................................................................................................................................................................GAACTGTTCAGAAGTGAGGTGGACTCC......................................................................................................................................................................................................................................................2712.002.00-----------1.00---1.00---------------------------------------
........................................................................................................................................................................................................TTTCTTTTTTATTTATTTTTTTTTATTG.........................................................................................................................................................................................................................282.000.00--1.00----1.00-----------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTACGC........................................................................................................................................................................................................................................................................................................................................................212.000.00----1.00------1.00-------------------------------------------
............................................................................................................................................................................................................TTTTTTATTTATTTTTTTTAACG..........................................................................................................................................................................................................................232.000.00--1.00---1.00------------------------------------------------
..................................................................................................................................................................................................ACTCCTTTTCTTTTTTATTTATTTTTTTTTTG...........................................................................................................................................................................................................................3212.002.00--1.00---1.00------------------------------------------------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTTACG............................................................................................................................................................................................................................222.000.00---1.00--1.00------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGGGTA.......................................................................................................................................................................................................................................................................................................................................................222.000.00----2.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................AGCTCACTGCAGCCTGGAACTCCTGGGACC...........................................................................................................................................302.000.00-2.00-----------------------------------------------------
................................................................................................TGCGGGGGGTGGTTGGATAG.........................................................................................................................................................................................................................................................................................................................................202.000.00---------------------2.00---------------------------------
...............................................................................................................................................................................................................................................................................................GCCTGGAACTCCTGGGCTCAAGTGATCAA.................................................................................................................................292.000.00------------------2.00------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTATTTTTTGTAGAGACGGGTCTC.......................................302.000.002.00------------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTA...........................................................................................................................................................................................................................................................................................................................................................181.000.00----1.00--------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTTAAAG.........................................................................................................................................................................................................................261.000.00--1.00----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTAGAGACGGGGTCCAC.....................................241.000.00-1.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................TCACTGCAGCCTGGAACTCCGGGC..............................................................................................................................................241.000.001.00------------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTATAG..........................................................................................................................................................................................................................251.000.00--1.00----------------------------------------------------
....................................................................................................................................................................................................TCCTTTTCTTTTTTATTTATTTTTTTTTTTCG.........................................................................................................................................................................................................................321.000.00--1.00----------------------------------------------------
................................................................................TGAAAGGAAGCAAGGATAG..........................................................................................................................................................................................................................................................................................................................................................191.000.00-------------1.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTATTTTTTGTAGAGACGGGGG.........................................291.000.001.00------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTATTTTTTGTTAC.................................................221.000.00-1.00-----------------------------------------------------
..................................................................................................................................................................................................ACTCCTTTTCTTTTTTATTTATTTTTTTTTG............................................................................................................................................................................................................................311.000.00---1.00---------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTATTTTTTGTGTT.................................................211.000.00-----1.00-------------------------------------------------
.......................................................................................................................................................................................................................................AGGTCTTGCTCTGTCACCCAGGCGGAG...........................................................................................................................................................................................271.000.001.00------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTATTTTTTGTAGAGACGG............................................2301.001.00----------------1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTTGTAGAGACGGGGCT........................................231.000.00-1.00-----------------------------------------------------
........................................................................................................................................................................................................................................................................................CACTGCAGCCTGGAACTCCTGGGTC............................................................................................................................................251.000.001.00------------------------------------------------------
.......................................................................................................................................................................................................................................AGGTCTTGCTCTGTCACCCAGGCTGGAGCAG.......................................................................................................................................................................................311.000.001.00------------------------------------------------------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTCTGT..............................................................................................................................................................................................................................201.000.00-------1.00-----------------------------------------------
.......................................................................................AAGCAAGGTTGCGGGATGG...................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00-----------------------------------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTTCAT............................................................................................................................................................................................................................221.000.00------1.00------------------------------------------------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTTTTTG...........................................................................................................................................................................................................................2331.001.00--0.67----0.33-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................AACTCCTGGGCTCAAGTGATCTTCTTAC............................................................................................................................281.000.00-1.00-----------------------------------------------------
....................................................................................................................................................................................................................................................................................AGCTCACTGCAGCCTGGAACTCCTGGGGC............................................................................................................................................291.000.00-1.00-----------------------------------------------------
................................................................................TGAAAGGAAGCAAGGATGG..........................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................................TAATTTTTTTTTTATTCAC.......................................................191.000.00-----1.00-------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTGCAT..........................................................................................................................................................................................................................251.000.00-1.00-----------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGGGCA.......................................................................................................................................................................................................................................................................................................................................................221.000.00----1.00--------------------------------------------------
...................................................................................................................................................................................................................................................................................TAGCTCACTGCAGCCTGGAAC.....................................................................................................................................................2101.001.00------------1.00------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGCTCT.......................................................................................................................................................................................................................................................................................................................................................2211.001.00----1.00--------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTAGAGACGGGGTCCACC....................................251.000.00-1.00-----------------------------------------------------
................................................................................................TGCGGGGGGTGGTTGTCTG..........................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00---------------------------
..................................................................................................................................................................................................ACTCCTTTTCTTTTTTAAATT......................................................................................................................................................................................................................................211.000.00-----------------------------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTAGAGACGGGGTCTAACCG..................................241.000.00-----------1.00-------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTTAG...........................................................................................................................................................................................................................241.000.00------1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTGTAGAGACGGGCC.........................................211.000.00-1.00-----------------------------------------------------
.....................................................................................................................................................................................................CCTTTTCTTTTTTATTTCTG....................................................................................................................................................................................................................................201.000.00---1.00---------------------------------------------------
............................................................................................................................................................................................................TTTTTTATTTATTTTTTTTTCGAG.........................................................................................................................................................................................................................241.000.001.00------------------------------------------------------
.........................................................................................................................................................................................................TTCTTTTTTATTTATTTTTTGG..............................................................................................................................................................................................................................221.000.001.00------------------------------------------------------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTTTTTTCAG........................................................................................................................................................................................................................261.000.00--1.00----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................TGGGCTCAAGTGATCTTCCATT............................................................................................................................221.000.00-----------------------1.00-------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTATTTTTTCTG...................................................221.000.001.00------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................TATTATCTGGTCCTGTTGTCAAGGCT..............2611.001.00-------------------------------------------1.00-----------
......................................................................................................................................................................................................................ATTTTTTTTTTGAGTTGTGC...................................................................................................................................................................................................................201.000.001.00------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAAGGCTGGTCTCAAACTCTG251.000.00-------------------------------------------------1.00-----
..........................................................................................................................................AAGACAGAAATAGGCTCATTTATGGACTCAAC...................................................................................................................................................................................................................................................................................3211.001.00-----1.00-------------------------------------------------
....................................................................................................................................................................................................................................................................................AGCTCACTGCAGCCTGGAACTCCGGGG..............................................................................................................................................271.000.001.00------------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTACC..............................................................................................................................................................................................................................211.000.001.00------------------------------------------------------
..................................................................................................................................................................................................ACTCCTTTTCTTTTTTGAT........................................................................................................................................................................................................................................191.000.00-----1.00-------------------------------------------------
...............................................................................................................................................................................................TGGACTCCTTTTCTTTTTTATTTATTTTTTTT..............................................................................................................................................................................................................................3211.001.00-1.00-----------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................TTTTATTTTTTGTAGAGACGGGGGCCC......................................271.000.00------------------------------------------------1.00------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTAAG.............................................................................................................................................................................................................................211.000.00---1.00---------------------------------------------------
.............................................................................................................................................................................................................................................TGCTCTGTCACCCAGGCTGGAGTGCAGGGGA.................................................................................................................................................................................311.000.001.00------------------------------------------------------
....................................................................................................................................................................................................TCCTTTTCTTTTTTATTTACATG..................................................................................................................................................................................................................................231.000.00--1.00----------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTCC................................................................................................................................................................................................................................191.000.00-------1.00-----------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTATTTTTTCTCG..................................................211.000.00---1.00---------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTATTTTTTGGCG..................................................221.000.001.00------------------------------------------------------
......................................................................................................................................................................................................................................................................................CTCACTGCAGCCTGGAACTCCGGGC..............................................................................................................................................251.000.001.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................ACTGCAGCCTGGAACTCCTGGGCGC...........................................................................................................................................251.000.00-1.00-----------------------------------------------------
................................................................................TGAAAGGAAGCAAGGAAAC..........................................................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00---------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................TTTTATTTTTTGTAGAGACGGGGTCACT.....................................281.000.00-1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TATTTTTTGTAGAGACGGGGTATA......................................241.000.00----------------------1.00--------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................TTTTATTTTTTGTAGAGACGCGAT.........................................241.000.00----------------------1.00--------------------------------
....................................................................................................................................................................................................................................................................................AGCTCACTGCAGCCTGGAACTCCCGGA..............................................................................................................................................271.000.001.00------------------------------------------------------
........................TCAGTACCCTGGTGATTTTGATCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------------1.00-----------------------
............................................................................................................................................................................................................TTTTTTATTTATTTTTTTATAG...........................................................................................................................................................................................................................221.000.00--1.00----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTAGAGACGGGGTAATT.....................................221.000.00---------------1.00---------------------------------------
....................................................................................................................................................................................................................................................................................AGCTCACTGCAGCCTGGAACTCCGGGC..............................................................................................................................................271.000.00-1.00-----------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTAGGA........................................................................................................................................................................................................................................................................................................................................................211.000.00----1.00--------------------------------------------------
...........................................................................................................................................................................................................CTTTTTTATTTATTTTTTTTAT............................................................................................................................................................................................................................221.000.00---1.00---------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................CTAATTTTTTTTTTATTTATAG.....................................................221.000.00------1.00------------------------------------------------
................................................................................TGAAAGGAAGCAAGGAAGC..........................................................................................................................................................................................................................................................................................................................................................191.000.00--------1.00----------------------------------------------
.........................................................................................................................................................................................................TTCTTTTTTATTTATTTTCATT..............................................................................................................................................................................................................................221.000.00---1.00---------------------------------------------------
............................................................................................................................................................................................................TTTTTTATTTATTTTTTTTATCG..........................................................................................................................................................................................................................231.000.00--1.00----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTAGAGACGGGGTCTGGA....................................251.000.00-1.00-----------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTTTAAT.........................................................................................................................................................................................................................261.000.00--1.00----------------------------------------------------
.........................................................................................................................................................................................................TTCTTTTTTATTTATTTTTTTTTTATAG........................................................................................................................................................................................................................281.000.00---1.00---------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................CCCGAGTAGCTAGGAC....................................................................................................1601.001.00--------------------1.00----------------------------------
................................................................................TGAAAGGAAGCAAGGTTGGTC........................................................................................................................................................................................................................................................................................................................................................211.000.00----------1.00--------------------------------------------
............................................................................................................................................................................................................TTTTTTATTTATTTTTTTTTTCTTT........................................................................................................................................................................................................................251.000.001.00------------------------------------------------------
..............................................................................................................................................................................................................TTTTATTTATTTTTTTTTCTAA.........................................................................................................................................................................................................................221.000.00-----1.00-------------------------------------------------
......................................................................................................GGGTGGTTGGGAAAAACA.....................................................................................................................................................................................................................................................................................................................................181.000.00-----------------1.00-------------------------------------
.......................................TTTTGATCCAGGTAAACT....................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------1.00----------------------
................................................................................TGAAAGGAAGCAAGGTTGA..........................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00-------
.............................................................................................................................TGGATATCTTTGGAAGACA.............................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------1.00-------------
.......................................................................................................................................................................................................TTTTCTTTTTTATTTATTTTTTTTTG............................................................................................................................................................................................................................261.000.00------1.00------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTAGAGACGGGGTCCACC....................................231.000.001.00------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTAGAGACGGGGTCCTCC....................................251.000.00-1.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................TAGCTCACTGCAGCCTGGAATAT...................................................................................................................................................231.000.00--------------------------------------1.00----------------
...................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTAGAGACGGGGTCCGGC....................................221.000.001.00------------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGCT.........................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------------------------------1.00-----------------
................................................................................................TGCGGGGGGTGGTTGTGTA..........................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00--------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTGCA...........................................................................................................................................................................................................................241.000.001.00------------------------------------------------------
..........................................................................AAACACTGAAAGGAAGCTGG...............................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------1.00------------------------------
................................................................................TGAAAGGAAGCAAGGTTGCTT........................................................................................................................................................................................................................................................................................................................................................2111.001.00--------1.00----------------------------------------------
..........................................................................................................................................................................................................................................................................................CTGCAGCCTGGAACTCCTGGG..............................................................................................................................................2101.001.00----------------1.00--------------------------------------
................................................................................TGAAAGGAAGCAAGGATAC..........................................................................................................................................................................................................................................................................................................................................................191.000.00--------1.00----------------------------------------------
.................................................................................................................................................................................................................TATTTATTTTTTTTTTGATAG.......................................................................................................................................................................................................................211.000.00-----1.00-------------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTTTATTT........................................................................................................................................................................................................................271.000.00---1.00---------------------------------------------------
...................................................................................................................................................................................................................................................................................TAGCTCACTGCAGCCTGGAACT....................................................................................................................................................2201.001.00-----------------------------------1.00-------------------
.............................................................................................................................................................................................................................................................................................................................................AGTAGCTAGGACCACATGCGTG..........................................................................................221.000.00-1.00-----------------------------------------------------
..................................................................................................................................................................................................................................................................................ATAGCTCACTGCAGCCTGGAACTCCTGGACC............................................................................................................................................311.000.001.00------------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGC..........................................................................................................................................................................................................................................................................................................................................................1911.001.00----1.00--------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTATTTTTTGTAGAGACGGGCCT........................................271.000.00-1.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................AGTGATCTTCCCACCTCAACCTCTCC................................................................................................................261.000.00-1.00-----------------------------------------------------
.......................................................................................................................................................................................................TTTTCTTTTTTATTTATTTCTAT...............................................................................................................................................................................................................................231.000.00-----1.00-------------------------------------------------
................................................................................TGAAAGGAAGCAAGGTTGGG.........................................................................................................................................................................................................................................................................................................................................................201.000.00---------1.00---------------------------------------------
..........................................................................................................................................................................................................TCTTTTTTATTTATTTTTTTTTTG...........................................................................................................................................................................................................................2420.500.50--0.50----------------------------------------------------
.....................................................................TGGAGAAACACTGAAAG.......................................................................................................................................................................................................................................................................................................................................................................1780.500.50--------------------------------------------------0.50----
................................................................................................TGCGGGGGGTGGTTGGGTAGT........................................................................................................................................................................................................................................................................................................................................2120.500.50----------0.50--------------------------------------------
................................................................................................TGCGGGGGGTGGTTGGG............................................................................................................................................................................................................................................................................................................................................1720.500.50------------------------0.50------------------------------
.......................................................................................................................................................................................................TTTTCTTTTTTATTTATTTTTTTT..............................................................................................................................................................................................................................2430.330.33---0.33---------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TCAACCTCCCGAGTAGCTAGGACCAC.................................................................................................2640.250.25-0.25-----------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................ACCTCCCGAGTAGCTAGGACC...................................................................................................2160.170.17-0.17-----------------------------------------------------
.................................................................................................................AAAAGTCTTATATGG.............................................................................................................................................................................................................................................................................................................................1560.170.17----------------------------------------------------0.17--
................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTAGAGACGGGGTCTA......................................2380.120.12-----------0.12-------------------------------------------

Antisense strand
TGGGACCCAGGAATCTCCTGTTAATCAGTACCCTGGTGATTTTGATCCAGGTAATCTGGGCACCACCTTTGGAGAAACACTGAAAGGAAGCAAGGTTGCGGGGGGTGGTTGGGAAAAGTCTTATATGGATATCTTTGGAAGACAGAAATAGGCTCATTTATGGACTCAACTTGAACTGTTCAGAAGTGAGGTGGACTCCTTTTCTTTTTTATTTATTTTTTTTTTGAGTTGAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACATCCATAGCTCACTGCAGCCTGGAACTCCTGGGCTCAAGTGATCTTCCCACCTCAACCTCCCGAGTAGCTAGGACCACATGTGTGAGTCATCATGCCCAGCTAATTTTTTTTTTATTTTTTGTAGAGACGGGGTCTATTATCTGGTCCTGTTGTCAAGGCTGGTCTCAAACTCCT
..............................................................................(((.((((((((((....))).((((((...........(((((....((....))....))))).........(((((((.(((((............))))).)))))))....))))))..................))))))).)))........................................................................................................................................................................................................................
...........................................................................76.......................................................................................................................................................229......................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577588(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040022(GSM532907)
G575N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGAGACGGGGTCTGCAA................................... 222.000.00--------------2.00----------------------------------------
.................................................................................................................................................................................................................................................................................CATAGCTCACTGCAGCCTGGAACTCTACG............................................................................................................................................... 292.000.00-2.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................ATCATGCCCAGCTAATTTTTTT................................................................ 221.000.00---------------------------------------1.00---------------
.................................................................................................................................................................................GTTCAGAAGTGAGGTGTCTG........................................................................................................................................................................................................................................................ 201.000.00----------------------------------1.00--------------------
..................................................................................................................................................................................................................................................................................................................................TCAACCTCCCGAGTAGCTAGGACCATG................................................................................................ 271.000.00-----1.00-------------------------------------------------
................................................................................................................................................................................................................................................................................................................................ACTCGGGAGGTTGAGG............................................................................................................. 1601.001.00--------------------1.00----------------------------------
................................................................................................................................................................................................................................................................................................................................CCTCAACCTCCCGAGTAGCTAGGACCACGGG.............................................................................................. 311.000.001.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................GTGGGAAGATCACTTGAGCCCAGG............................................................................................................................ 2401.001.00------------1.00------------------------------------------
...............................................................................................................................................................................................................................................................................................GCCTGGAACTCCTGGGCTCAAGTGACGC.................................................................................................................................. 281.000.00-1.00-----------------------------------------------------
.......................................................................................................................................................................................................................TTTTTTTTTTGAGTTCATA................................................................................................................................................................................................................... 191.000.00----------------------------1.00--------------------------
................................................................................................................................................................................................................................................................................................................................CCTCAACCTCCCGAGGACC.......................................................................................................... 191.000.00------------------------------1.00------------------------
........................................................................................................................................................................................................................................................................................................................................TCCCGAGTAGCTAGGACCACAAT.............................................................................................. 231.000.00--------------------------------------------1.00----------
.........................................................................................................................................................................................................................................................CAGGCTGGAGTGCAGTGGCACATCGC.......................................................................................................................................................................... 261.000.001.00------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................CTGGGCTCAAGTGATCTTCCCACA........................................................................................................................... 241.000.00------------1.00------------------------------------------
............................................................................................................................................................................................................................................................................................................................CCCACCTCAACCTCCCGAGTCGG.......................................................................................................... 231.000.001.00------------------------------------------------------
......................................................................................................................................................................................................AAAAAAAATAAATAAAAAAGAAAAG.............................................................................................................................................................................................................................. 2511.001.00---------------------------------------------1.00---------
............ATCTCCTGTTAATCACCT............................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------1.00-------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................GTCATCATGCCCAGCTAAGA..................................................................... 201.000.00--------------1.00----------------------------------------
........................................................................................................................................GGAAGACAGAAATAGGGA................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------1.00------------------
.............................................................................................................................................................................................................................................................................................CAGCCTGGAACTCCTGGGCTCGGG........................................................................................................................................ 241.000.00-1.00-----------------------------------------------------
..........................................................................................................................................................................................................................................................................................CTGCAGCCTGGAACTCCTGGGCTCGC......................................................................................................................................... 261.000.001.00------------------------------------------------------
............................................................................................................................................................................................................TTTTTTATTTATTTTTTCCAG............................................................................................................................................................................................................................ 211.000.00-------------------------1.00-----------------------------
...GACCCAGGAATCTCCTGGCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-------------1.00-----------------------------------------
.......................................................................................................................................................................................................................................AGGTCTTGCTCTGTCACCCAGGCTGCCC.......................................................................................................................................................................................... 281.000.001.00------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................CTGGGCTCAAGTGATCTTCCCACCA.......................................................................................................................... 251.000.00--------------------------1.00----------------------------
............................................................................................................................................................................................................................................................................................................................CCCACCTCAACCTCCCGAGGG............................................................................................................ 211.000.001.00------------------------------------------------------
......................................................................................................................................................................................................................................GAGGTCTTGCTCTGTCACCCAGGCCC............................................................................................................................................................................................. 261.000.001.00------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCAAGGCTGGTCTCAGGCA... 231.000.001.00------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................CCACCTCAACCTCCCGTG.............................................................................................................. 181.000.00---------------------------------1.00---------------------
.........................................................................................................................................................................................................................................................................................ACTGCAGCCTGGAACTCCTGGGAG............................................................................................................................................ 241.000.00----------------------------------------------1.00--------
........................................................................................................................................................................................................................................................................................................................................CACACATGTGGTCCTAGCTACTCGGGA.......................................................................................... 2720.500.50---------------------------------------------------0.50---
...........................................................................GCTTCCTTTCAGTGTT.................................................................................................................................................................................................................................................................................................................................................................. 1660.170.17------------------------------------------------------0.17
...............................................................................CCTTGCTTCCTTTCAG.............................................................................................................................................................................................................................................................................................................................................................. 1660.170.17-----------------------------------------------------0.17-
...................................................................................................................................................................................................................................................................................................................................TGGTCCTAGCTACTCGGGAGGTTG.................................................................................................. 2460.170.170.17------------------------------------------------------