ID: uc003irt.1_intron_0_0_chr4_169391989_r.3p
GENE: DDX60L(5)
chr4:169391939-169392188-


(1)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
XRN.ip

Sense strand
CACGTGCATAGTATTTACCAGTACATTGAGTTTTGACACACGCATGCACGTGTAACCCAAACTCTTGTTCCACAATACGTCTTCTCATGCCCCTGCCCAGTCCATCCTCATCCCATCCCCTAGAAGCAACCACTGTTTAAATCCTTTCTATTGCCTTCTTGAGTTTTGCCTGTTGTAGAACTTTCTTTTTTTTTTTTTAGATGGAGTTTCGCTCTTTTTGCACAGGCTGAAGTGCAATGCCGTGATCTCG
....................................................................................................((((((...............((((((((.....................)))).)))).(((((((((.....)))))))))................)))))).............................................
.....................................................................................86......................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM532880(GSM532880)
G659T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTATTG................................................237.000.00-2.001.00-4.00-------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCCAG................................................235.000.00-4.00--1.00-------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCGAG................................................235.000.005.00-----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTAG...................................................215.000.00--3.00-2.00-------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGGAGTGG.........................................233.000.00-------3.00----------
................ACCAGTACATTGAGTTTTGACACACGCATGC...........................................................................................................................................................................................................3113.003.00------3.00-----------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTCTTG...................................................213.000.00---3.00--------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAG..................................................2222.502.500.500.501.00-0.50-------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAAG.................................................2372.140.29-0.430.430.141.14-------------
..........................................................................................CCCTGCCCAGTCCATCCTCATCCCA.......................................................................................................................................2512.002.00---------2.00--------
....................................................................................................................................................................................CTTTCTTTTTTTTTTTTTACCAG...............................................232.000.00-1.00-1.00--------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCGGG................................................232.000.002.00-----------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTATTTG...............................................242.000.00-1.001.00---------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTGTG....................................................202.000.00---2.00--------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTCG..................................................222.000.001.00-1.00---------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTATTT.................................................232.000.00-2.00----------------
......................................................................................................................................................................................TTCTTTTTTTTTTTTTAGCTG...............................................212.000.00-----1.00--1.00---------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTCTTG.................................................232.000.00--1.001.00--------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTAG..................................................2191.221.220.440.110.110.110.330.11------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTCGG.................................................231.000.00-----1.00------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTCAAG..................................................221.000.00--1.00---------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTCTGG................................................241.000.00--1.00---------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAGACATG.............................................271.000.00--------1.00---------
..................................................................................................................................................................................AACTTTCTTTTTTTTTGCTC....................................................201.000.001.00-----------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCAAA................................................231.000.00-1.00----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTCTG..................................................221.000.00---1.00--------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCCAT................................................231.000.00-1.00----------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCTA.................................................221.000.00---1.00--------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCTCG................................................231.000.00---1.00--------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTCGAG................................................241.000.001.00-----------------
................................................................................................................................................................................AGAACTTTCTTTTTTTTTTTTTAGC.................................................251.000.00-----1.00------------
..........................................................................................................................................................................TGTTGTAGAACTTTCTCAG.............................................................191.000.00----------1.00-------
....................................................................................................................................................................................CTTTCTTTTTTTTTTTTTACCTG...............................................231.000.00--1.00---------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTATTT................................................231.000.00---1.00--------------
...............................................................................................................................................................................TAGAACTTTCTTTTTTTTTTTTTAGTGT...............................................281.000.001.00-----------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTACTG................................................231.000.00-1.00----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTCTTG................................................241.000.00--1.00---------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCCCA................................................231.000.00--1.00---------------
.....................................................................................................................................................................................TTTCTTTTTTTTTTTTTAGCCTC..............................................231.000.001.00-----------------
.....................................................................................................................................................................................TTTCTTTTTTTTTTTTTAGCCAG..............................................231.000.001.00-----------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCCCT................................................231.000.001.00-----------------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTCTAG................................................231.000.001.00-----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTGTG.....................................................191.000.00-1.00----------------
................................................................................................................................................................................AGAACTTTCTTTTTTTTTTTTTC...................................................231.000.001.00-----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTGTGG....................................................201.000.00-1.00----------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00------------1.00-----
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTCG....................................................201.000.00--1.00---------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTATTTT...............................................2570.570.29-0.14--0.43-------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTATTTG...............................................2570.570.29-0.29--0.29-------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTA...................................................2170.290.29-0.14--0.14-------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTACAG................................................2470.290.290.14-------0.14---------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAATGG...............................................2570.140.29-0.14----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAAAG................................................2470.140.29----0.14-------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAATG................................................2470.140.29--0.14---------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTATCTG...............................................2570.140.29-0.14----------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTATTT................................................2470.140.29----0.14-------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTATTGG...............................................2570.140.29---0.14--------------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAAGG................................................2470.140.29--------0.14---------
..................................................................................................................................................................................AACTTTCTTTTTTTTTTTTTAACT................................................2470.140.29--------0.14---------
...................................................................................................................................................................................ACTTTCTTTTTTTTTTTTTAGGGAA..............................................2590.111.220.11-----------------

Antisense strand
CACGTGCATAGTATTTACCAGTACATTGAGTTTTGACACACGCATGCACGTGTAACCCAAACTCTTGTTCCACAATACGTCTTCTCATGCCCCTGCCCAGTCCATCCTCATCCCATCCCCTAGAAGCAACCACTGTTTAAATCCTTTCTATTGCCTTCTTGAGTTTTGCCTGTTGTAGAACTTTCTTTTTTTTTTTTTAGATGGAGTTTCGCTCTTTTTGCACAGGCTGAAGTGCAATGCCGTGATCTCG
....................................................................................................((((((...............((((((((.....................)))).)))).(((((((((.....)))))))))................)))))).............................................
.....................................................................................86......................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM532880(GSM532880)
G659T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
..................................................................................TCTCATGCCCCTGCCCGGTT.................................................................................................................................................... 201.000.00---------------1.00--
......................................................................................................................................................................................................................................AGTGCAATGCCGTGATCAGC 201.000.00--------------1.00---
............................................................................................................................................................................................................................CACAGGCTGAAGTGCATTAC.......... 201.000.00-------------1.00----
...............................................................................................................................................................................TAGAACTTTCTTTTTTTTTTTTTTC.................................................. 251.000.00-----------1.00------
................................................................................................................................................................................................................................ACGGCATTGCACTTCAGCC....... 1940.250.25----------------0.25-
.................AACTCAATGTACTGG.......................................................................................................................................................................................................................... 1550.200.20-----------------0.20