ID: uc003iqu.1_intron_0_0_chr4_165675564_f.5p
GENE: LOC100505989(1)
chr4:165675514-165675763+


(2)
B-CELL
(13)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(2)
OTHER
(3)
SKIN

Sense strand
CAGACTCACGGGTTCCTTCCTAGCCACTCTCAGGGACAGGAATGCTTCTGGTAAGTTTTTATAAATCCCCTATTTTATTTACCTCAAAACTCTCTCTCTTTTTTTTTTTTAACTAATTCATATGGACTAGAAATGTAATATTTAACTGCCACAGCTAAGAAATTTTACTTATTGTTCTTTCCTGGAGGTATTTTTTTTTTTTTTTTTTTTTTTTTGCTGTTAAAAAAAATGGCTAAAGAGGGAAGGAAAA
................................................................................................................(((.(((....))).)))................((((.(((..(((((.............)))))..)))..))))............................................................
..........................................................................................91...................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................CTCTTTTTTTTTTTTAACCCAG.....................................................................................................................................2279.000.0043.0025.00-8.003.00------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTATG..................................2816.000.007.007.00-1.001.00------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCAAG..................................285.000.00---1.003.00-1.00----------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTATTG...............................315.000.002.003.00---------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTATTT...............................314.000.00-1.00-1.002.00------------------
...........................................................................................CTCTCTCTTTTTTTTTTTTAACTTG......................................................................................................................................254.000.00-3.00-1.00-------------------
...............................................................................................CTCTTTTTTTTTTTTAACCCCG.....................................................................................................................................223.000.00-2.00-1.00-------------------
...............................................................................................CTCTTTTTTTTTTTTAACCCAA.....................................................................................................................................223.000.002.00---1.00------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTAAAA...............................312.000.001.00---1.00------------------
.................................................................................................CTTTTTTTTTTTTAACTCTAG....................................................................................................................................212.000.00-1.00-1.00-------------------
.......................................................................................AACTCTCTCTCTTTTTTTTTTCTG...........................................................................................................................................242.000.00---1.001.00------------------
.............................................................................................CTCTCTTTTTTTTTTTTACCG........................................................................................................................................212.000.001.00--1.00-------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTATAT...............................312.000.00-1.00-1.00-------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTGGCA........................................252.000.00--2.00--------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCG....................................262.000.001.00--1.00-------------------
.............................................................................................CTCTCTTTTTTTTTTTTAACCCAG.....................................................................................................................................242.000.002.00----------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTTTTTTAG..................................311.000.00--1.00--------------------
....................................................................................CAAAACTCTCTCTCTTTTTTTTTTAG............................................................................................................................................261.000.00----1.00------------------
........................................................................................................................................................................................................TTTTTTTTTTTTTTTGCTGTTATGGG........................261.000.00--1.00--------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTCTA......................................271.000.00-----1.00-----------------
........................................................................................ACTCTCTCTCTTTTTTTTTTTTTTAG........................................................................................................................................261.000.001.00----------------------
....................................................................................CAAAACTCTCTCTCTTTTTTTTTTTTTTAG........................................................................................................................................301.000.001.00----------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTATTC...............................311.000.001.00----------------------
...........................................................................................................................................................................................GTATTTTTTTTTTTTTTTTTTTTCGGC....................................271.000.00--1.00--------------------
...................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTGTTCCCC.........................301.000.00--1.00--------------------
............................CTCAGGGACAGGAATTTC............................................................................................................................................................................................................181.000.00--------------1.00--------
.......................................................................................AACTCTCTCTCTTTTTTTTTTTTCTG.........................................................................................................................................261.000.00----1.00------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTTTTTCT...................................301.000.00--1.00--------------------
........................................................................................................................................................................................GAGGTATTTTTTTTTTTATC..............................................201.000.00------------------1.00----
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTTTTATAT..................................311.000.001.00----------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCACC..................................281.000.00--1.00--------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCGCT..................................281.000.00--1.00--------------------
................................................................ATCCCCTATTTTATTTCTGG......................................................................................................................................................................201.000.00--1.00--------------------
...................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTGTCCCC..........................291.000.00--1.00--------------------
................................................................................................TCTTTTTTTTTTTTAACTAATAG...................................................................................................................................231.000.00----1.00------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTATTT......................................271.000.00------1.00----------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCAAT..................................281.000.00-1.00---------------------
.........................................................................................CTCTCTCTCTTTTTTTTTTTTATTGT.......................................................................................................................................261.000.00---1.00-------------------
..............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTGCTGGGCC...........................331.000.00--1.00--------------------
....................................................................................CAAAACTCTCTCTCTTTTTTTTTTTTCTAG........................................................................................................................................301.000.00---1.00-------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTTTTGTTC..................................311.000.00-----1.00-----------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCCCG..................................281.000.00----1.00------------------
...........................................GCTTCTGGTAAGTTTTCGG............................................................................................................................................................................................191.000.00-------1.00---------------
........................................................................................................................................................................................GAGGTATTTTTTTTTTTTTTTTTCC.........................................251.000.00--1.00--------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCATG..................................281.000.00----1.00------------------
.......................................................................................................................................................................................................TTTTTTTTTTTTTTTTGCTGTTCCCC.........................261.000.00--1.00--------------------
........................................................................................ACTCTCTCTCTTTTTTTTCTG.............................................................................................................................................211.000.00--1.00--------------------
..........................................................................................TCTCTCTCTTTTTTTTTTTTAACTTTTG....................................................................................................................................281.000.00---1.00-------------------
.................................................................................................CTTTTTTTTTTTTAACTCTGG....................................................................................................................................211.000.00--1.00--------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTCTA.......................................261.000.00-----1.00-----------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCGAG..................................281.000.00------1.00----------------
..........................................................................................................................................................................................................TTTTTTTTTTTTTGCTGTTCTGC.........................231.000.00-----1.00-----------------
.....................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTGCTGTTCG...........................261.000.00--1.00--------------------
.............................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTGCGAG..............................311.000.00-----1.00-----------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTCT.......................................261.000.00--1.00--------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCCGG..................................281.000.00--1.00--------------------
...................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGCTGTCCTT..........................291.000.00--1.00--------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTC........................................251.000.00--1.00--------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCTC...................................271.000.00------1.00----------------
...........................................................................................................................................................................................GTATTTTTTTTTTTTTTTTTTTTTTTAAA..................................291.000.00--1.00--------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTATGG.................................291.000.00-1.00---------------------
.............................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTGTTC...............................301.000.00--1.00--------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTTCT......................................271.000.00--1.00--------------------
........................................................................................ACTCTCTCTCTTTTTTTTTTTTGG..........................................................................................................................................241.000.001.00----------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTACTG.................................291.000.001.00----------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTCAGC..................................281.000.00--1.00--------------------
.............................................................................................CTCTCTTTTTTTTTTTTAACTTG......................................................................................................................................231.000.00----1.00------------------
...............................................................................................CTCTTTTTTTTTTTTAACGTG......................................................................................................................................211.000.00-----------1.00-----------
...........................................................................................................................................................................................GTATTTTTTTTTTTTTTTTTTTCCGG.....................................261.000.00--1.00--------------------
.......................................................................................AACTCTCTCTCTTTTTTTTTTTTTCTG........................................................................................................................................271.000.00---1.00-------------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTACCT...............................311.000.001.00----------------------
................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTGCTGTTGTG..........................321.000.00-1.00---------------------
...............................................................................................CTCTTTTTTTTTTTTAACCCGT.....................................................................................................................................221.000.001.00----------------------
.............................................................................................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTTGCTTATT............................331.000.00----1.00------------------
..............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTGCTGGGCG...........................331.000.00--1.00--------------------
.........................................................................................................................................................................................AGGTATTTTTTTTTTTTTTTTTTTGAA......................................271.000.00--1.00--------------------
.............................................................................................CTCTCTTTTTTTTTTTTACGG........................................................................................................................................211.000.00----1.00------------------
.......................................................................................AACTCTCTCTCTTTTTTTTTTTCTGT.........................................................................................................................................261.000.00--1.00--------------------
....................................................................................CAAAACTCTCTCTCTTTTTTTTTTTAG...........................................................................................................................................271.000.00---1.00-------------------
...............................................................................................CTCTTTTTTTTTTTTAACCTAA.....................................................................................................................................221.000.001.00----------------------
.....................................................................................AAAACTCTCTCTCTTTTTTTTTTTT............................................................................................................................................2550.200.20---------------------0.20-
.....................................................................................................................................................................................CTGGAGGTATTTTTTTT....................................................1760.170.17-------0.17---------------
.................................................................................................CTTTTTTTTTTTTAACTAAT.....................................................................................................................................2060.170.17----0.17------------------
.................................................................................................CTTTTTTTTTTTTAACTAATAG...................................................................................................................................2260.170.17----0.17------------------
.........................................................................TTTATTTACCTCAAAA.................................................................................................................................................................1690.110.11----------------------0.11

Antisense strand
CAGACTCACGGGTTCCTTCCTAGCCACTCTCAGGGACAGGAATGCTTCTGGTAAGTTTTTATAAATCCCCTATTTTATTTACCTCAAAACTCTCTCTCTTTTTTTTTTTTAACTAATTCATATGGACTAGAAATGTAATATTTAACTGCCACAGCTAAGAAATTTTACTTATTGTTCTTTCCTGGAGGTATTTTTTTTTTTTTTTTTTTTTTTTTGCTGTTAAAAAAAATGGCTAAAGAGGGAAGGAAAA
................................................................................................................(((.(((....))).)))................((((.(((..(((((.............)))))..)))..))))............................................................
..........................................................................................91...................................................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTTTTTTTTTTTGGGT............................... 331.000.00----------1.00------------
............................................................................................................................................................................................TATTTTTTTTTTTTTTTTTTTTTTTTTGAAG............................... 311.000.00-------------1.00---------
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTGCC.......................................... 221.000.00------------1.00----------
...............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTGCTGTTTTAT......................... 341.000.00---------1.00-------------
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTTTTTTTTTTTCAGT............................... 331.000.00-------------------1.00---
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTTTTTTTTTTTCGCC............................... 331.000.00----------1.00------------
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTTTTTTTTTGATT................................. 311.000.00--------1.00--------------
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTTTTTTTTTTTGGGCC.............................. 341.000.00----------------1.00------
...........................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAATAC................................... 2801.001.00-----------------1.00-----
..........................................................................................................................................................................................GGTATTTTTTTTTTTTTTTTTTTTTTTTGCG................................. 311.000.00--------1.00--------------
..................................................................................CTCAAAACTCTCTCTCATG..................................................................................................................................................... 191.000.00---------------1.00-------
............................................................................................................................................................................................AACAGCAAAAAAAAAAAAAAAAAAAAAAAAATA............................. 3311.001.00---------1.00-------------
.............................................................................................................................................................................................................TTTTTTTTTTGCTGTTAATGC........................ 211.000.00-------1.00---------------
....................................................................................................................................................................TTACTTATTGTTCTTCC..................................................................... 171.000.00------1.00----------------
...............................................................................................................TCCATATGAATTAGT............................................................................................................................ 1550.200.20--------------------0.20--