ID: uc003iqg.3_intron_2_0_chr4_160235921_f.3p
GENE: (3)
chr4:160243299-160243548+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
BRAIN 		(3)
BREAST 		(11)
CELL-LINE 		(4)
CERVIX 		(6)
HEART 		(2)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TAAGAGTCATCATTTCCACAGTGACAGAATTCTTTGTGTACCTGCAAGAAATTCAGCTGGTGCTAAAGATACTTGATATGTATTTTTCAATAAGCAAAATTGTAGGGCATTTAAAAAGAAAGGACCCTAAAACATTCTTTTTGAATACTTGTTTTTAATAAAAGTAGTAGTTTTTACAAAGTATGTCTTTTGCTTTTCAGAACAACTCTTGGAATTTATGCACCAGTTGCCTGCTTTTGCCAATATGACA
......................................................(((((.((((((((((((.......))))))))....((((((.....(((((..(((.......)))..)))))....((((.....))))..))))))........)))).)))))..............................................................................
..................................................51....................................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532883(GSM532883)
G871N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040025(GSM532910)
G613T. (cervix)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................GTAGTAGTTTTTACAGTT.....................................................................1825.000.00-4.002.003.00--3.003.001.00-1.001.00---1.00-1.001.00------1.00--1.00--1.00-1.00---
......................................................AGCTGGTGCTAAAGATACTTAAA.............................................................................................................................................................................239.000.009.00------------------------------------
...................................................................................................................................................................GTAGTAGTTTTTACAGT......................................................................173.000.00--1.00---------1.00----------1.00-------------
...................................................................................................................................................................GTAGTAGTTTTTACAG.......................................................................163.000.00--------1.002.00---------------------------
........................CAGAATTCTTTGTGTACC................................................................................................................................................................................................................1812.002.00----2.00--------------------------------
.................................................................................................................................................................................................................................GTTGCCTGCTTTTGCCAATAT....2112.002.00----2.00--------------------------------
...................................................................................................................................................................GTAGTAGTTTTTACAGGT.....................................................................181.000.00--1.00----------------------------------
...........................................................................................AAGCAAAATTGTAGGGCATTTA.........................................................................................................................................2211.001.00------------------------1.00------------
.................................................................................................................................................................................................................TGGAATTTATGCACCAGTTGCCTGCTTT.............2811.001.00----------------1.00--------------------
.................................................................................................................................................................AAGTAGTAGTTTTTACAGTT.....................................................................201.000.00-------------1.00-----------------------
...................................................................................................................................................................GTAGTAGTTTTTACAGGTT....................................................................191.000.00---1.00---------------------------------
................CACAGTGACAGAATTCTCC.......................................................................................................................................................................................................................191.000.00---------1.00---------------------------
...................................................................................................TTGTAGGGCATTTAAAAAAAAA.................................................................................................................................221.000.00----------------------------------1.00--
...............................................................................................................................................................AAAAGTAGTAGTTTTTACAGTT.....................................................................221.000.00--------------------------1.00----------
.................................................................................................AATTGTAGGGCATTTAAAAAGAA..................................................................................................................................2311.001.00---------------------------1.00---------
........................................................................................AATAAGCAAAATTGTAGGGCATTTA.........................................................................................................................................2511.001.00-------------------1.00-----------------
...................................................................................................................................................................GTAGTAGTTTTTACAGTTT....................................................................191.000.00--------------------------------1.00----
...................................................................................................................................................................GTAGTAGTTTTTACAGTTA....................................................................191.000.00--------1.00----------------------------
.....................................................................................TTCAATAAGCAAAATTGTAGGGC..............................................................................................................................................2311.001.00----------1.00--------------------------

Antisense strand
TAAGAGTCATCATTTCCACAGTGACAGAATTCTTTGTGTACCTGCAAGAAATTCAGCTGGTGCTAAAGATACTTGATATGTATTTTTCAATAAGCAAAATTGTAGGGCATTTAAAAAGAAAGGACCCTAAAACATTCTTTTTGAATACTTGTTTTTAATAAAAGTAGTAGTTTTTACAAAGTATGTCTTTTGCTTTTCAGAACAACTCTTGGAATTTATGCACCAGTTGCCTGCTTTTGCCAATATGACA
......................................................(((((.((((((((((((.......))))))))....((((((.....(((((..(((.......)))..)))))....((((.....))))..))))))........)))).)))))..............................................................................
..................................................51....................................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM532883(GSM532883)
G871N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040025(GSM532910)
G613T. (cervix)		SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................................................................................TTTAATAAAAGTAGTAGCG.............................................................................. 192.000.00-----2.00-------------------------------
..................................................ATTCAGCTGGTGCTAAGGT..................................................................................................................................................................................... 191.000.00-----------------------------------1.00-
.................................................AATTCAGCTGGTGCTACGGT..................................................................................................................................................................................... 201.000.00----------------------1.00--------------
........................GTACACAAAGAATTCTG................................................................................................................................................................................................................. 1711.001.00-----------------------------1.00-------
.................................................AATTCAGCTGGTGCTAGGGC..................................................................................................................................................................................... 201.000.00--------------------1.00----------------
................................................AAATTCAGCTGGTGCTATG....................................................................................................................................................................................... 191.000.00-----1.00-------------------------------
.................................................AATTCAGCTGGTGCTACGGC..................................................................................................................................................................................... 201.000.00------------------------------1.00------
.................................................AATTCAGCTGGTGCTACGGA..................................................................................................................................................................................... 201.000.00--------------1.00----------------------
.................................................AATTCAGCTGGTGCTACGT...................................................................................................................................................................................... 191.000.00---------------------1.00---------------
...............................................................................................................................................................................................GTTGTTCTGAAAAGC............................................ 1570.140.14------------------------------------0.14