ID: uc003iml.2_intron_3_0_chr4_152609916_r.3p
GENE: (9)
chr4:152609866-152610115-


(1)
B-CELL
(1)
BRAIN
(7)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(2)
UTERUS

Sense strand
GTAAATGCACAGTGACAGTAGTAGAATAGTTGTCATTAGCTGAAAGTGATCAGAATGTTCTGGTGACATCTCAGGGTTTAGCAAAGAAAAAGTGGCTGTCTCAGAGGAGGCAGAGGGGACAGTTTCAGATTTGCCTTCAGAATGCTGATCTTTCATTTTTGGGGAGGCTTTATGTAATTTTCTTTTTTTTTTTTTAACAGAACGAAGTCGGCCTACTGGAGTTCTTCCAAAATGTGATAAAAGAAACTAG
....................................................................................................................................((((((.(((...(((....)))..)))..))))))..................................................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR343334GSM532876(GSM532876)
G547T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTCG.................................................25416.000.00209.00170.0027.0010.00-----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTACG....................................................2361.000.0030.0016.003.0011.001.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCCG.................................................2534.000.0016.0016.002.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTC..................................................2433.000.0013.0017.001.002.00-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTCT.................................................2532.000.0014.0015.001.002.00-----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTACG.....................................................2230.000.0012.008.003.004.00-2.001.00--------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACG....................................................2215.000.004.006.00-5.00-----------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACTCG.................................................2415.000.007.008.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAATTCG.................................................2514.000.006.007.00-1.00-----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTACG......................................................2111.000.005.003.00-2.001.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTTG.................................................259.000.005.004.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTCA.................................................258.000.006.002.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACG...................................................238.000.001.003.003.001.00-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACTCG..................................................246.000.005.001.00-------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTACA....................................................234.000.002.00-2.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCCA.................................................254.000.002.001.00-1.00-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAACCG.................................................254.000.001.003.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTATTTG..................................................243.000.001.00-2.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCC..................................................243.000.002.001.00-------------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACAATG................................................253.000.001.001.00-1.00-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTATCTC..................................................242.000.001.001.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAATATG.................................................252.000.00-2.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACGCG.................................................252.000.00-2.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAACTC.................................................252.000.001.001.00-------------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTTCTAG...................................................252.000.00--1.00-1.00----------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTTCG.....................................................232.000.001.001.00-------------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTTGGCC...................................................252.000.00----1.001.00---------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTACC.......................................................211.000.00-1.00-------------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTTGGGG...................................................251.000.00----1.00----------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACACCAG...............................................261.000.00-1.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTATCCG..................................................241.000.00---1.00-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAACT..................................................241.000.00-1.00-------------
...AATGCACAGTGACAGTAT.....................................................................................................................................................................................................................................181.000.00---------1.00-----
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACCTC..................................................241.000.00-1.00-------------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACTTGG................................................251.000.00----1.00----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTGGTG....................................................231.000.00-----1.00---------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTACCAT..................................................251.000.00----1.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAATAG.................................................251.000.001.00--------------
.......................................................................................................................................................................................................GAACGAAGTCGGCCTTTA.................................181.000.00----------1.00----
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCGG.................................................251.000.00-1.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAATTG.................................................251.000.001.00--------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAAACT.................................................251.000.001.00--------------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTTCGG....................................................241.000.00----1.00----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTAAAACC.................................................261.000.00----1.00----------
..................................................................................................................................................................................TTTCTTTTTTTTTTTTTAACAAAGG...............................................251.000.00--1.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCTCG................................................261.000.001.00--------------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTCTAG....................................................241.000.00----1.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAACCC.................................................251.000.001.00--------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTA..................................................241.000.00-1.00-------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTGGC.....................................................221.000.00----1.00----------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTCGG.....................................................231.000.00-----1.00---------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTAAA................................................261.000.00--1.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAATCG..................................................241.000.001.00--------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTGCAG....................................................231.000.00----1.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAATTCA.................................................251.000.001.00--------------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACACG.................................................241.000.00-1.00-------------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACACAAG...............................................261.000.00---1.00-----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTCCAA...................................................241.000.001.00--------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTAACG.....................................................221.000.00-1.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCG..................................................241.000.00-1.00-------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTGTTT....................................................231.000.00----1.00----------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTCTAG.......................................................211.000.00---1.00-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACACC..................................................241.000.00-1.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAAAGG.................................................251.000.00----1.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCTG.................................................251.000.001.00--------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTATGT....................................................231.000.00-----1.00---------
............................................................................................................................................................................................................AAGTCGGCCTACTGGAGTTCTTCC......................2411.001.00-------1.00-------
.................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAACAACG................................................251.000.00----1.00----------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTGGAG....................................................231.000.00----1.00----------
.......................................................................................................................................................................................................GAACGAAGTCGGCCTACT.................................1811.001.00-----------1.00---
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTAG.................................................251.000.001.00--------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTACA.....................................................221.000.00--1.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTCTG................................................261.000.00-1.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAAACAT.................................................251.000.001.00--------------
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTCAAG...................................................241.000.00--1.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAGAAT..................................................241.000.00----1.00----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACCCC..................................................241.000.001.00--------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTCC.................................................251.000.00--1.00------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACCAG..................................................241.000.00-1.00-------------
..............................................................................................................................................................................................................GTCGGCCTACTGGAGTTCTTCC......................2211.001.00-------1.00-------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAGGCA..................................................241.000.00----1.00----------
..................................................................................................................................................................................TTTCTTTTTTTTTTTTTAACAATCG...............................................251.000.00-1.00-------------
.................................................................................................................................TTTGCCTTCAGAATGATA.......................................................................................................181.000.00------------1.00--
...............................................................................................................................................................................AATTTTCTTTTTTTTTTTTTATCA...................................................241.000.00------1.00--------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTGG.................................................251.000.00-1.00-------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACTCCG................................................261.000.001.00--------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTACCT...................................................231.000.00--1.00------------
..............................................................................................................................................................................TAATTTTCTTTTTTTTTTTTAGTG....................................................241.000.001.00--------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACCTC.................................................251.000.001.00--------------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACACG.................................................2540.500.250.250.25-------------
................................................................................................................GAGGGGACAGTTTCAGA.........................................................................................................................1730.330.33-------------0.33-
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACAATG................................................2640.250.25---0.25-----------
................................................................................................................................................................................ATTTTCTTTTTTTTTTTTTAACA...................................................2340.250.250.25--------------

Antisense strand
GTAAATGCACAGTGACAGTAGTAGAATAGTTGTCATTAGCTGAAAGTGATCAGAATGTTCTGGTGACATCTCAGGGTTTAGCAAAGAAAAAGTGGCTGTCTCAGAGGAGGCAGAGGGGACAGTTTCAGATTTGCCTTCAGAATGCTGATCTTTCATTTTTGGGGAGGCTTTATGTAATTTTCTTTTTTTTTTTTTAACAGAACGAAGTCGGCCTACTGGAGTTCTTCCAAAATGTGATAAAAGAAACTAG
....................................................................................................................................((((((.(((...(((....)))..)))..))))))..................................................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR343334GSM532876(GSM532876)
G547T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
...................................................................................................................................................................................................................CCTACTGGAGTTCTTA....................... 162.000.00-----2.00---------
...............................................................................AGCAAAGAAAAAGTGTAG......................................................................................................................................................... 181.000.00--------1.00------
...............................................................................AGCAAAGAAAAAGTGTCTC........................................................................................................................................................ 191.000.00------1.00--------
........................................................................................................................AAGGCAAATCTGAAACT................................................................................................................. 1750.200.20--------------0.20