ID: uc003ikk.2_intron_3_0_chr4_146650382_f.5p
GENE: (4)
chr4:146650332-146650581+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(28)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(4)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
OTHER.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
TTGGGATTTTGGTGATTGTTTTCCGACACCTCCAAATTATGGAAAATACTGTAAGTCCCATCCTGAACTACTACTTTACATCCATTTTCTGGCCTTTATTTTAATCGTGGTCATGTGATTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACACTCTCCCAGGCTGACGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCACGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAG
............................................................................................................((...(((((..(((..((((.............))))..)))..)))))....))((((((....(((((((((.((....)))).)))))))))).))).........................................
...........................................................................................................108...................................................................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM532886(GSM532886)
G850T. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGAA............................................2437.000.00--10.001.005.002.00-3.002.001.005.00----2.00--2.00-2.00---1.00-----------------1.00----------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGA.............................................2320.000.00---10.004.001.00-1.00-1.00-2.00----------------------------------1.00------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAT...............................................2217.000.00---7.00-4.00-1.00-3.00-1.00--1.00--------------------------------------------
.......................................................................................................................................................................GCTGACGTGCAGTGGAAA.................................................................1816.000.00------11.00-5.00--------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTCGAG..................................................................................................................249.000.00-9.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTGG..............................................................................................................287.000.004.003.00---------------------------------------------------------
..............................................................................................................................................................................TGCAGTGGCGCGATCTCGGCTAT.....................................................237.000.00--3.001.00---------------2.00----------------------------------1.00----
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGT.............................................237.000.00---4.001.00--1.00-1.00-------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAAGAA............................................256.000.00--4.00------------1.00------------------------------------1.00------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCATAA.............................................245.000.00--3.00------------------1.00---------------------1.00---------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTGGG.............................................................................................................284.000.002.002.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTGGTC............................................................................................................304.000.002.002.00---------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAGCCG......................................................................................................313.000.002.001.00---------------------------------------------------------
...............................................................................................................................................AGATGGAGTCTCACACGTGC.......................................................................................203.000.00-3.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTCGGG...........................................................................................................283.000.003.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTCGAG..........................................................................................................293.000.003.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTGGCC..............................................................................................................283.000.002.001.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTCGA...................................................................................................................233.000.002.001.00---------------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCATAAT............................................253.000.00--3.00--------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTTGGTC.........................................................................................................322.000.001.001.00---------------------------------------------------------
.......................................................................................................................................................................................GCGATCTCGGCTCACTGCAAGT.............................................222.000.00---2.00-------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTCGAG...............................................................................................................262.000.001.001.00---------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGAAA...........................................252.000.00--2.00--------------------------------------------------------
..............................................................................................................................................................................TGCAGTGGCGCGATCTCGGCTAGA....................................................242.000.00------------1.00-----------------1.00----------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTGAG...................................................................................................................252.000.001.001.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTGG.............................................................................................................292.000.002.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTTGGTC..........................................................................................................322.000.002.00----------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGAAG...........................................252.000.00----1.00--1.00---------------------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTG.....................................................................................................................232.000.002.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCTGG..............................................................................................................272.000.001.001.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTCGAG.................................................................................................................252.000.00-2.00---------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGAGAA..........................................262.000.00-------------------------2.00---------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGAAT...........................................252.000.00--2.00--------------------------------------------------------
.....................................................AGTCCCATCCTGAACGTCA..................................................................................................................................................................................192.000.00-----------------------2.00-----------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................................282.000.001.001.00---------------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAAGAT............................................252.000.00----1.001.00-----------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTGGTC...........................................................................................................312.000.001.001.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTCGAG................................................................................................................252.000.001.001.00---------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAAAGG......................................................................................................312.000.00-2.00---------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAAGTT............................................242.000.00-----1.00-----------------------------------1.00-----------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTTCGAG..........................................................................................................321.000.001.00----------------------------------------------------------
..............................................................................................................................................................................TGCAGTGGCGCGATCTCGGCTAGAA...................................................251.000.00--------------------------1.00--------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTTTTTC.........................................................................................................321.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTATTC..........................................................................................................311.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................................281.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTCGGG................................................................................................................261.000.001.00----------------------------------------------------------
.........................................................................................................................TTTTTTTTTTTTTTTTTTTTTGAGATGGCTG..................................................................................................311.000.00-1.00---------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAGCGGG.....................................................................................................321.000.00-1.00---------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAAC........................................................................................................291.000.00----------------1.00------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTTC.............................................................................................................291.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTCTAG...........................................................................................................281.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTCTGG...............................................................................................................241.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTCGAG...............................................................................................................271.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTCGC................................................................................................................231.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTGGTT...........................................................................................................311.000.001.00----------------------------------------------------------
....................................................................................................................................TTTTTTTTTTGAGATGGAGTCTCACACTATG.......................................................................................311.000.00-1.00---------------------------------------------------------
..........................................................................................................................................................................................................................TTCACGCCATTCTCCTGCCTCT..........221.000.00-----------1.00-----------------------------------------------
....................................................................................................................................................................................................ACTGCAAGCTCTGCCTCCCATGCC..............................241.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTCAGC...........................................................................................................281.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTGAGG............................................................................................................291.000.001.00----------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGACCA.......................................................................................................301.000.00-----------------------------------------------------1.00-----
................................................................................................................ATGTGATTTTTTTTTTTTTCTAG...................................................................................................................231.000.001.00----------------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAAGCTCTGAAC......................................311.000.00-------------------------------------------------------1.00---
...........................................................................................................................................................................................TCTCGGCTCACTGCAAGCTAAA.........................................221.000.00--------------------------------------1.00--------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTCTT................................................................................................................251.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCGG...............................................................................................................261.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................................................291.000.001.00----------------------------------------------------------
..........................................................................................................................................................................................................AGCTCTGCCTCCCACGCC..............................181.000.001.00----------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCATAGA............................................241.000.00------------------------1.00----------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAAGAGA...........................................261.000.00-----------------------------------------------1.00-----------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCATAAA............................................251.000.00---------------------1.00-------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTGA....................................................................................................................241.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTAATC...........................................................................................................281.000.00----------------1.00------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTGGT................................................................................................................261.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTGGCC...................................................................................................................231.000.001.00----------------------------------------------------------
..........................................................................................................................................................................................ATCTCGGCTCACTGCAAGCTCTGCCTCCACG.................................311.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTCTGC...........................................................................................................281.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTGGG..............................................................................................................281.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTGGTC.............................................................................................................291.000.00-1.00---------------------------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTTCGAG.................................................................................................................271.000.00-1.00---------------------------------------------------------
...............................................................................................................................................AGATGGAGTCTCACACTACCC......................................................................................211.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................................311.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTGGG..............................................................................................................271.000.001.00----------------------------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTTTTTTCCC..............................................................................................................301.000.001.00----------------------------------------------------------
.................................................................................................................................................................................AGTGGCGCGATCTCGGCTCAAATA.................................................241.000.00-----------------------------------1.00-----------------------
..................................................................................................................GTGATTTTTTTTTTTTTTTTTTTTATTT............................................................................................................281.000.00----------------1.00------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTACGG...........................................................................................................281.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTCTT...........................................................................................................281.000.001.00----------------------------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTTTTTTTTCTT............................................................................................................321.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTGTTC.............................................................................................................281.000.00-------------1.00---------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTCGAG...................................................................................................................231.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTCGA..............................................................................................................271.000.001.00----------------------------------------------------------
...................................................................................................................................................................................................CACTGCAAGCTCTGCCTCCCACT................................231.000.00-----------------1.00-----------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTTTTATA........................................................................................................331.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTCTC...........................................................................................................281.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTTTCGAG........................................................................................................311.000.00-1.00---------------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAAGAAG...........................................261.000.00----1.00------------------------------------------------------
...................TTTCCGACACCTCCAACT.....................................................................................................................................................................................................................181.000.00--------------------------------------------1.00--------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTTTCAGG........................................................................................................311.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTAGTC............................................................................................................301.000.001.00----------------------------------------------------------
..............................................................................................................................................................................................CGGCTCACTGCAAGCTCGGC........................................201.000.00-------1.00---------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTGGGC.............................................................................................................291.000.001.00----------------------------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTCAAT....................................................................................................................241.000.00---------------------------------------------1.00-------------
.........................................................................................................................................................................................GATCTCGGCTCACTGCAAGCTAAGT........................................251.000.00--1.00--------------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCAAGT.............................................241.000.00-----1.00-----------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCGA...............................................................................................................261.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTCTGG...............................................................................................................261.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTCTGG................................................................................................................251.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTGAA...................................................................................................................231.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCGAA..............................................................................................................271.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTCGAG............................................................................................................301.000.001.00----------------------------------------------------------
.............................................................................................................................................................................................................................ACGCCATTCTCCTGCCTCAGCCTCCCGACC301.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTCGAG............................................................................................................291.000.001.00----------------------------------------------------------
....................................................................................................................GATTTTTTTTTTTTTTTTTTTTTCTCC...........................................................................................................271.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTCAG...........................................................................................................281.000.001.00----------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCAT...............................................211.000.00---1.00-------------------------------------------------------
..................................................................................................................GTGATTTTTTTTTTTTTTTTTTTTTTAAGC..........................................................................................................301.000.001.00----------------------------------------------------------
...............................................................................................................................................................................GCAGTGGCGCGATCTCGGCTAAAG...................................................241.000.00-----------------1.00-----------------------------------------
..............................................................................................................TCATGTGATTTTTTTTTTTTTTTGAA..................................................................................................................261.000.001.00----------------------------------------------------------
..................................................................................................................GTGATTTTTTTTTTTTTTTTTTTTTTTTGTGG........................................................................................................321.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCCGG..............................................................................................................271.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTCGAG..........................................................................................................311.000.001.00----------------------------------------------------------
..................................................................................................................GTGATTTTTTTTTTTTTTTTTTCTG...............................................................................................................251.000.001.00----------------------------------------------------------
...................TTTCCGACACCTCCACCA.....................................................................................................................................................................................................................181.000.00-------------------------------------1.00---------------------
...............................................................................................................................................................................GCAGTGGCGCGATCTCGGCTCAAAT..................................................251.000.00----------------------1.00------------------------------------
..................................................................................................................GTGATTTTTTTTTTTTTTTTTCACA...............................................................................................................251.000.00-------------1.00---------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCTGA..............................................................................................................271.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTCGAG.............................................................................................................281.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTGGCC.............................................................................................................281.000.001.00----------------------------------------------------------
...............................................................................................................................................................................GCAGTGGCGCGATCTCGGCTAGA....................................................231.000.00----------------------------------------1.00------------------
....................................................................................................................................................................................................ACTGCAAGCTCTGCCTCCCACCCC..............................241.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTCGAG..............................................................................................................271.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTCACC..........................................................................................................311.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTCGAG...........................................................................................................301.000.00-1.00---------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAGAAAAG....................................................................................................331.000.00-------------1.00---------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAGCTAG.....................................................................................................321.000.00-1.00---------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTTTTGATT........................................................................................................331.000.001.00----------------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTTTAGTT...........................................................................................................301.000.00-1.00---------------------------------------------------------
.............................................................................................................................................................................GTGCAGTGGCGCGATCTCGGCTCACTCC.................................................281.000.00-----1.00-----------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAATTA......................................................................................................311.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTCCA...........................................................................................................281.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTTTCC..........................................................................................................291.000.001.00----------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTTTCTC.........................................................................................................301.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTCGA.............................................................................................................291.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTCGA..................................................................................................................241.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTCTTG............................................................................................................301.000.001.00----------------------------------------------------------
..........................................................................................................................................................................................................................TTCACGCCATTCTCCTGCCTCTAA........241.000.00------------------------------------1.00----------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTCTGG................................................................................................................261.000.001.00----------------------------------------------------------
.............................................................................................................................................................................................TCGGCTCACTGCAAGCTCTGCCTCCCACGCC..............................311.000.001.00----------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCATTTT............................................241.000.00----------------------1.00------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTCGGC...............................................................................................................241.000.001.00----------------------------------------------------------
....................TTCCGACACCTCCAACAG....................................................................................................................................................................................................................181.000.00-----------------------------1.00-----------------------------
....................................................................................................................................................................................................ACTGCAAGCTCTGCCTCCCACGCC..............................241.000.00-1.00---------------------------------------------------------
....................................................................................................................GATTTTTTTTTTTTTTTTTTTTTTTTCTTT........................................................................................................301.000.00--------------------------------------------------------1.00--
..........................................................................................................................................................................................................................TTCACGCCATTCTCCTGCCTAAA.........231.000.00-------------------------------1.00---------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGCATAT.............................................241.000.00-------1.00---------------------------------------------------
.................................................................................................................TGTGATTTTTTTTTTTTTTTTTTTGGGG.............................................................................................................281.000.001.00----------------------------------------------------------
......................................................................................................................................................................................CGCGATCTCGGCTCACTGCATTA.............................................231.000.00---1.00-------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGATC........................................................................................................291.000.00-1.00---------------------------------------------------------
....................................................................................................................GATTTTTTTTTTTTTTTTTTTTTCCAC...........................................................................................................271.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTGGGC............................................................................................................301.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTCGAG................................................................................................................261.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTGGAG...................................................................................................................231.000.00-1.00---------------------------------------------------------
...................................................................................................................TGATTTTTTTTTTTTTTTTTCTGC...............................................................................................................241.000.001.00----------------------------------------------------------
.................................................................................................................................................................................AGTGGCGCGATCTCGGCTCAATT..................................................231.000.00--------------------------------------------------1.00--------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTACG............................................................................................................271.000.001.00----------------------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAGTGGG.....................................................................................................321.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTGCC...............................................................................................................271.000.001.00----------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTGTCC...........................................................................................................311.000.00-1.00---------------------------------------------------------
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTGGTC...............................................................................................................271.000.001.00----------------------------------------------------------
.....................................................................................................................................................................................GCGCGATCTCGGCTCACTGGGGC..............................................231.000.00--------------1.00--------------------------------------------
.....................................................................................................................ATTTTTTTTTTTTTTTTTTTTTTTTGAAGG.......................................................................................................301.000.00-1.00---------------------------------------------------------
...............................................................................................................................................................TCTCCCAGGCTGACGTGC.........................................................................1850.200.20----------------------------------------------------------0.20
................................................................................................................ATGTGATTTTTTTTTTTTTTTTTTTTTTTTG...........................................................................................................3170.140.140.14----------------------------------------------------------

Antisense strand
TTGGGATTTTGGTGATTGTTTTCCGACACCTCCAAATTATGGAAAATACTGTAAGTCCCATCCTGAACTACTACTTTACATCCATTTTCTGGCCTTTATTTTAATCGTGGTCATGTGATTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACACTCTCCCAGGCTGACGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCACGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAG
............................................................................................................((...(((((..(((..((((.............))))..)))..)))))....))((((((....(((((((((.((....)))).)))))))))).))).........................................
...........................................................................................................108...................................................................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		GSM1105751AGO4(GSM1105751)
small RNA sequencing data. (ago4 hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM532886(GSM532886)
G850T. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
....................................................................................................................................................................................GGCGCGATCTCGGCTCACTGTA................................................ 222.000.00------------2.00----------------------------------------------
........................................................................................................................................................................................CGATCTCGGCTCACTGCAAGAAAA.......................................... 241.000.00--------------------------------1.00--------------------------
..................................................................................................................GTGATTTTTTTTTTTTTTTTTTTTTTTTCCCG........................................................................................................ 321.000.00------------------------------------------------1.00----------
..................................................................................................................................................................................................................CTCCCACGTTCACGCAT....................... 171.000.00---------------------------------------------------1.00-------
...................................................................................................................TGATTTTTTTTTTTTTTTTTTTTTTTTTG.......................................................................................................... 291.000.00--------------1.00--------------------------------------------
.........................................................................................................................................................................................................................GTTCACGCCATTCTCCTGCCTCAGCCAAA.... 291.000.00----------------------------1.00------------------------------
....................................................................................................................................................................................GGCGCGATCTCGGCTCACTTTGA............................................... 231.000.00---------------------------1.00-------------------------------
............................................................................................................................................................................................................................CACGCCATTCTCCTGTAG............ 181.000.00-------------------------------------------------1.00---------
...........................................................................................................................................................................................................................TCACGCCATTCTCCTGCCTCAGCCCCAA... 281.000.00---------------------------------------1.00-------------------
.................................................................................................................................................................................................................CCTCCCACGTTCACGCCATCGG................... 221.000.00----------------------------------1.00------------------------
............................................................TCCTGAACTACTACTTAGGG.......................................................................................................................................................................... 201.000.00-1.00---------------------------------------------------------
.........................................................................................................CGTGGTCATGTGATTTGG............................................................................................................................... 181.000.00---------------------------------1.00-------------------------
..................GGAGGTGTCGGAAAA......................................................................................................................................................................................................................... 1540.250.25---------------------------------------------------------0.25-