ID: uc003iju.3_intron_4_0_chr4_146018913_r
GENE: (1)
chr4:146018863-146019321-


(7)
B-CELL
(3)
BRAIN
(9)
BREAST
(30)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(3)
HELA
(2)
LIVER
(2)
OTHER
(1)
RRP40.ip
(42)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
CTGGAGGTGCCGAGAATCTGAGTTTCGGCAAGCAGCCAGGTCTGGAAACTGTGAGTGTGTGGGCTTTTCTCCGACGTCGAGCGTGGTCCTAGCGTAAACAGATGCATTCGCCTCTCCGGTTTCAATCTTTTTTTACGTTTGCGCTTTCCTCAAGGCCGGTGGGTCAGGAGTGGAGCCTTAGTCATTCTAACGCTGGAGGTGTCAGTAGGACCAACAGAGTCTGGTGCCGACACGGCTTACTGTTGCGCGCTCTTCTAGGCCTCAACTTCCTCTCAACTGTGTGGTCAGTTCAGGGCCGGGAATCCAATCTTTTCCGAGCTCCATATTTTATCCACTTGGTGGCGTCCAGTCCCAAGTCCGGCAGTTGAATTCTGCCCTAAAGATGGGCTTTATTTCTATCTTTTTTTAGGTAACAGGACATTCAGTTAGTAATGATGGTTGCAGGTTGAATAGTCTCGC
....................................................(((((...((((((..(((((((.(((.((.(((....(((((((((.((.((....)).))...(((....))).........)))))))))....)))..)))))...))).))))..))))))....)))))................................................................................................................................................................................................................................................................................
..................................................51......................................................................................................................................187..............................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038860(GSM458543)
MM426. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
....................................................................................................................................................................CAGGAGTGGAGCCTTCGGC....................................................................................................................................................................................................................................................................................1932.000.00-3.001.00-2.00--2.002.00---2.00---1.00---------2.00--1.00-----2.00--1.001.00--1.001.00----1.001.00-1.00-1.00-1.00---------1.00---1.00-------------------1.00-----1.00------1.00--------
...................................................................................................................................................................TCAGGAGTGGAGCCTGCGG.....................................................................................................................................................................................................................................................................................1913.000.00-1.003.00---1.00--1.00-----1.00------1.00--1.00-----------1.00-------1.00--------------1.00---------------------1.00----------------------------
....................................................................................................................................................................CAGGAGTGGAGCCTTCGG.....................................................................................................................................................................................................................................................................................189.000.00--1.00------1.00-2.00----1.00-------------1.00---------1.00------------------------------1.001.00--------------------------------------
...................................................................................................................................................................TCAGGAGTGGAGCCTGCG......................................................................................................................................................................................................................................................................................188.000.00----1.00-1.00--1.00--1.00------1.00--------------1.00--1.00------------------1.00------------------------------------------------------
.....................................AGGTCTGGAAACTGTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................1817.007.002.00--------------------------1.00-----2.00--------------------------------------------------------1.00------------------1.00-
...........GAGAATCTGAGTTTCGGCAAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2316.006.006.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTCAGTAGGACCAACAGAG................................................................................................................................................................................................................................................1914.004.00---4.00-----------------------------------------------------------------------------------------------------------
.....................................AGGTCTGGAAACTGTGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.003.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTTTGCGCTTTCCTCTG..................................................................................................................................................................................................................................................................................................................173.000.00---------------------------------------------------------------------------1.00----1.00-----------------------1.00------
....................................................................................................................................................................CAGGAGTGGAGCCTTCG......................................................................................................................................................................................................................................................................................173.000.00-------------------------1.00----1.00------------------------------------------------------------1.00-------------------
.............GAATCTGAGTTTCGGACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................192.000.00-----------------------1.00---------------------------------1.00-----------------------------------------------------
..........................GGCAAGCAGCCAGGTCTGGAAACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2612.002.00--------------------------------1.00---------------------------------------------1.00--------------------------------
.........................CGGCAAGCAGCCAGGTCTGGAAACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2712.002.00---------------------------------------1.00-------------------------------------------------------------1.00---------
.......................................................................................................................................................................................................................................ACGGCTTACTGTTGCGCG..................................................................................................................................................................................................................1812.002.00---------------------2.00-----------------------------------------------------------------------------------------
...................GAGTTTCGGCAAGCAGCCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.002.00--------------------------------------------------------------------------------------------------------------
..................TGAGTTTCGGCAAGCAGCCAGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2612.002.00------------------2.00--------------------------------------------------------------------------------------------
............................CAAGCAGCCAGGTCTGGAAACT.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTCTATCTTTTCAG....................................................191.000.00-----------------------------------------------------------------------------------------------------------1.00---
............................................................GGGCTTTTCTCCGACGTCG............................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------1.00-----------------------
...............ATCTGAGTTTCGGCAAGCAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------1.00--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................TGAATTCTGCCCTAAAGAT...........................................................................1911.001.00----1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GGTGTCAGTAGGACCAACAGAG................................................................................................................................................................................................................................................2211.001.00------------------------1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................TCAGGAGTGGAGCCTGTG......................................................................................................................................................................................................................................................................................181.000.00------------------------------------------------------1.00--------------------------------------------------------
.......................................................................................................................................CGTTTGCGCTTTCCTCTA..................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------------------------------------------------1.00-------------------------------
................................CAGCCAGGTCTGGAAACTGTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................CAGGAGTGGAGCCTTTGT.....................................................................................................................................................................................................................................................................................181.000.00--1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................TCCGGCAGTTGAATTCTG.....................................................................................1811.001.00----------------------------------------------------------------------------------------------------1.00----------
......................TTTCGGCAAGCAGCCAGGTCTGGAAACTGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00----------------------------1.00----------------------------------------------------------------------------------
.....................................................................................................................................................................AGGAGTGGAGCCTTAGA.....................................................................................................................................................................................................................................................................................171.000.00------1.00--------------------------------------------------------------------------------------------------------
........GCCGAGAATCTGAGTTTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------------------1.00----
................TCTGAGTTTCGGCAAGCAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCAAGTCCGGCAGTTGAATTCTG.....................................................................................2511.001.00-----------1.00---------------------------------------------------------------------------------------------------
..............................AGCAGCCAGGTCTGGAAACTGTGAGCGTG................................................................................................................................................................................................................................................................................................................................................................................................................291.000.00-------------------------------1.00-------------------------------------------------------------------------------
.........CCGAGAATCTGAGTTTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---1.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................CAGGAGTGGAGCCTTAGGTAA..................................................................................................................................................................................................................................................................................211.000.00------------------1.00--------------------------------------------------------------------------------------------
............................................................GGGCTTTTCTCCGACGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------1.00------------------------------------
.......................TTCGGCAAGCAGCCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00------------------------------------------------------------------
...............................................ACTGTGAGTGTGTGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................CAGGAGTGGAGCCTTCGTC....................................................................................................................................................................................................................................................................................191.000.00--------1.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACAGAGTCTGGTGCCGACACG.................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------1.00---------------------------
..................................................GTGAGTGTGTGGGCTTTTCTCCGACGTC.............................................................................................................................................................................................................................................................................................................................................................................................2811.001.00--------------------------------------1.00------------------------------------------------------------------------
.......................................................................................................................................CGTTTGCGCTTTCCTCT...................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------------------------------------------------------1.00-------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................ATGGGCTTTATTTCTATCTTTTTTTAGGC................................................291.000.00---------------------------------------------------------------------------------1.00-----------------------------
.........................CGGCAAGCAGCCAGGTCTGGAAACTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00--------------1.00------------------------------------------------------------------------------------------------
........................................................GTGTGGGCTTTTCTCCGCT................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------1.00---------------------------------------------------------------------------------
...........GAGAATCTGAGTTTCGGCAAGCAGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------------------------------------------------------------------------1.00------------------------
.......................................GTCTGGAAACTGTGAGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CAGTCCCAAGTCCGGCAGTTGAATTC.......................................................................................2611.001.00---------------1.00-----------------------------------------------------------------------------------------------
..........CGAGAATCTGAGTTTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------1.00------------------------------------------
.........................CGGCAAGCAGCCAGGTCTGGAAACTGTGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00--------------------------------1.00------------------------------------------------------------------------------
................TCTGAGTTTCGGCAAGCAGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00-------------------------------------------------------------1.00-------------------------------------------------
...........GAGAATCTGAGTTTCGGCAAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.001.00--------------------------------------------------------------------------------------------------------------
..GGAGGTGCCGAGAATCTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------------------------------------------------------------------------------1.00-------
....................................................................................................................................................................................................AGGTGTCAGTAGGACCAA.....................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------------1.00-----------------
.......................................................................................................................................CGTTTGCGCTTTCCTCTG..................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------------------------------------1.00-------------------------------------------
..............AATCTGAGTTTCGGCAAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------------------1.00----------------
.........................CGGCAAGCAGCCAGGTCTGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------------------------------1.00------------
........................................TCTGGAAACTGTGAGTGTGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------------1.00----------------------------------------------------------
..................................GCCAGGTCTGGAAACTGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------1.00---------------------------------------------------------------------------------------------
.................CTGAGTTTCGGCAAGCAGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------------------------------------------------------------------1.00--------------------------
........................TCGGCAAGCAGCCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00---------------------------------------------------------------------------------------------------1.00-----------
..................................GCCAGGTCTGGAAACTGTGAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00----------------------------------------------------------------------------------------1.00----------------------
...................................................................................................................................................................................................GAGGTGTCAGTAGGACCAACAGAGTCTGGTGC........................................................................................................................................................................................................................................3211.001.00-1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................CAGGAGTGGAGCCTTGCA.....................................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00----------------------------------------------------------------------------
.............................................................................................................................TCTTTTTTTACGTTTGTTAT..........................................................................................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------------------------------------1.00--
......................TTTCGGCAAGCAGCCAGGTCTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-------------------------------------------------------------------------------------------------1.00-------------
...................................................................................................................................................................................AGTCATTCTAACGCTGGAGG....................................................................................................................................................................................................................................................................2011.001.00--------------1.00------------------------------------------------------------------------------------------------
.............GAATCTGAGTTTCGGTCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00--------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGTAACAGGACATTCAGTTAGTAAT..........................2911.001.00----------------------------------------------------------------------1.00----------------------------------------
...........GAGAATCTGAGTTTCGGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------1.00-----------------------------------------------------------------------------------
.TGGAGGTGCCGAGAATCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------------1.00----------------------------------------------
........................................................GTGTGGGCTTTTCTCCGACGTCGAG..........................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------1.00---------------------------------------------------
..................................GCCAGGTCTGGAAACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------1.00---------------------------------------------------------------
.......................................GTCTGGAAACTGTGAGTGTGTGGGCTTTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-----1.00---------------------------------------------------------------------------------------------------------
.............GAATCTGAGTTTCGGGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00---------------------------------------------------------------------------------------
....AGGTGCCGAGAATCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-------1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................TTGCGCTTTCCTCAAGGCCGGTGGGCC......................................................................................................................................................................................................................................................................................................271.000.00-------------------------------1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTATCTTTTTTTTTTG................................................201.000.00------------------------------------1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTTTTTAGGTAACAGGACA.......................................2311.001.00---------------------------------------------------------------------------------------------------------1.00-----
.........................CGGCAAGCAGCCAGGTCTGGAAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------------------------1.00--------------------------------------------------------------------------------------
.......................TTCGGCAAGCAGCCAGGTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------1.00-------------------------------------
...............................GCAGCCAGGTCTGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................1730.330.33--------------------------------------------------------------------------------------------------------------0.33
.....................................AGGTCTGGAAACTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................1650.200.20-----------------------------------------0.20---------------------------------------------------------------------
.....................................AGGTCTGGAAACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................1580.120.12-------------------0.12-------------------------------------------------------------------------------------------

Antisense strand
CTGGAGGTGCCGAGAATCTGAGTTTCGGCAAGCAGCCAGGTCTGGAAACTGTGAGTGTGTGGGCTTTTCTCCGACGTCGAGCGTGGTCCTAGCGTAAACAGATGCATTCGCCTCTCCGGTTTCAATCTTTTTTTACGTTTGCGCTTTCCTCAAGGCCGGTGGGTCAGGAGTGGAGCCTTAGTCATTCTAACGCTGGAGGTGTCAGTAGGACCAACAGAGTCTGGTGCCGACACGGCTTACTGTTGCGCGCTCTTCTAGGCCTCAACTTCCTCTCAACTGTGTGGTCAGTTCAGGGCCGGGAATCCAATCTTTTCCGAGCTCCATATTTTATCCACTTGGTGGCGTCCAGTCCCAAGTCCGGCAGTTGAATTCTGCCCTAAAGATGGGCTTTATTTCTATCTTTTTTTAGGTAACAGGACATTCAGTTAGTAATGATGGTTGCAGGTTGAATAGTCTCGC
....................................................(((((...((((((..(((((((.(((.((.(((....(((((((((.((.((....)).))...(((....))).........)))))))))....)))..)))))...))).))))..))))))....)))))................................................................................................................................................................................................................................................................................
..................................................51......................................................................................................................................187..............................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038860(GSM458543)
MM426. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
............................................................................................................................................................................................................................AGCCGTGTCGGCACCAG.............................................................................................................................................................................................................................. 1713.003.00----------3.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CGGCACCAGACTCTGTTGG...................................................................................................................................................................................................................................... 1913.003.002.00----1.00---------------------------------------------------------------------------------------------------------
..............................................................................................................................................CGGCCTTGAGGAAAGC............................................................................................................................................................................................................................................................................................................. 1612.002.00----1.00-----------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GAGGCCTAGAAGAGCGCG.................................................................................................................................................................................................... 1812.002.00-------------2.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................CTTGGTGGCGTCCAGGA............................................................................................................ 171.000.00----------------------------------------------------------------------------1.00----------------------------------
...........................................................................................................................................................................GTTAGAATGACTAAGGCTCC............................................................................................................................................................................................................................................................................ 2011.001.00----------------------------------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................................................CAGTAGGACCAACAGAGTC.............................................................................................................................................................................................................................................. 191.000.00-------------1.00-------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................ACGCCACCAAGTGGATAAAATATGG.................................................................................................................. 2511.001.00-1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................CGGACTTGGGACTGGACGC................................................................................................... 1911.001.00------------------------------------------------------------------------------------------------1.00--------------
.........................................................................................................................................................................................................................AACAGTAAGCCGTGTCGGCACCAGACT....................................................................................................................................................................................................................... 2711.001.00--------------------------------------------------------------1.00------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................GTGGCGTCCAGTCCCAAGC...................................................................................................... 191.000.00--------------------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................................................................................................................GCCTAGAAGAGCGCGCAACAG....................................................................................................................................................................................................... 2111.001.001.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................ACCAGACTCTGTTGGTCCTA.......................................................................................................................................................................................................................................... 2011.001.00-----------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TCGGCACCAGACTCTGTTG..................................................................................................................................................................................................................................... 1911.001.00-----------------------------------------1.00---------------------------------------------------------------------
....................................................................................................................................................................................................................................................AGTTGAGGCCTAGAAGAGCGCGC................................................................................................................................................................................................ 2311.001.00--------------1.00------------------------------------------------------------------------------------------------
..........................................................................................................................CAATCTTTTTTTACGTGTG.............................................................................................................................................................................................................................................................................................................................. 191.000.00----------------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTAATGATGGTTAGT................ 181.000.00----------------------------------------------1.00----------------------------------------------------------------
.............................................................................................................................................ACCGGCCTTGAGGAAAGCG........................................................................................................................................................................................................................................................................................................... 1911.001.00--------------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................GCTTTCCTCAAGGCCGACAG......................................................................................................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------------------------------------------1.00------------------
..............................................................................................................................................GCTTTCCTCAAGGCCGA............................................................................................................................................................................................................................................................................................................ 171.000.00-----------------------------------------------------------------------------1.00---------------------------------
......................................................................................................................................................................................................................CAGAGTCTGGTGCCGAAAA.................................................................................................................................................................................................................................. 191.000.00-------------------1.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................ACTCTGTTGGTCCTACTG............................................................................................................................................................................................................................................... 1811.001.00-----1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................CGCTCTTCTAGGCCTGTG.................................................................................................................................................................................................. 181.000.00---------------------------------------------------------------1.00-----------------------------------------------