| (1) AGO3.ip | (1) BREAST | (8) CELL-LINE | (1) HEART | (1) HELA | (1) LIVER | (3) OTHER | (2) SKIN |
| AACTTAATTTCCAAAATAGGTGTACCAATTTACATTCTTACCAGTGATATTTATGAGTTTATATTGATCTATATCTTTTAATACCTGTAGCTCTTGTTAAGCTTAATTTTCATCATTTTGACTGTTAAATACTTTTTTATTGTTGTTTTAATTTGCATTTTCCTGAATACTAATATTGTTGACTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCTCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA ...............................................................................................................................................((((((((.........((...((((....))))...)).........))))))))................................................... ..........................................................................................................................123..........................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | GSE20417(GSM514985) Colon and lung cancer pool. | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | SRR189784 | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR189782 | TAX577739(Rovira) total RNA. (breast) | GSM1105750AGO3(GSM1105750) small RNA sequencing data. (ago3 hela) | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................TGTTGACTTTTTTTTTGTT....................................................... | 19 | 47.00 | 0.00 | 47.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TCTCCCAGGCTGGAGTGCAGTGGTGCGACG........ | 30 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................GTGCAGTGGTGCGATCTCGGT... | 21 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................TTGCTCTGTCTCCCAGGCTGGGGTT..................... | 25 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................TCCCAGGCTGGAGTGCAGTGGTGCCCTG........ | 28 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................CTGGAGTGCAGTGGTGCGATCTCGGCAATG | 30 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ............................................................................................................................................................................................................TTGCTCTGTCTCCCAGGCTGGAGTGATAT................. | 29 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..................................................................................................................................................................................TTGACTTTTTTTTTTGAAATT................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ......................................................................................................................................................................................................................................AGTGGTGCGATCTCGGAAA. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ............................................................................................................................................................................................................TTGCTCTGTCTCCCAGGCTGGAGTGCAGGGTG.............. | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................GCAGTGGTGCGATCTCGGTTCT | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TCTCCCAGGCTGGAGTGCAGTGGTGGCG.......... | 28 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TATTGTTGACTTTTTTAACA......................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ..............................................ATATTTATGAGTTTATATTGATCTAT.................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................TCTGTCTCCCAGGCTGGAGTGCAGTGGGGG............ | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................TCTTGCTCTGTCTCCCAGGCGGAG........................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................ACTTTTTTTTTTGAGCTGA.................................................. | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................CTTTTTTTTTTGAGACAGAGTCGCG........................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................CTCTGTCTCCCAGGCTGGAGTGCAGTGCGTG............ | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................GTCTTGCTCTGTCTCCCAGGCTG.......................... | 23 | 0 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................GTGCAGTGGTGCGATCTCGGA... | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................GCAGTGGTGCGATCTCGGCTAGA | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ...............................................................................................................................AATACTTTTTTATTGTTGTG....................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................TGCTCTGTCTCCCAGGCTGGAGGCAG................... | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TCTCCCAGGCTGGAGTGCAGTGGTGCCAAC........ | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................TCTTGCTCTGTCTCCCAGGCTGGAGTGCGGCT................ | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................ACTTTTTTTTTTGAGACTCC................................................. | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TCTCCCAGGCTGGAGTGCAGTGGTGCGACCTG...... | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTGACTTTTTTTTTTGAGAGG................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................CATTTTGACTGTTAAATG....................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| AACTTAATTTCCAAAATAGGTGTACCAATTTACATTCTTACCAGTGATATTTATGAGTTTATATTGATCTATATCTTTTAATACCTGTAGCTCTTGTTAAGCTTAATTTTCATCATTTTGACTGTTAAATACTTTTTTATTGTTGTTTTAATTTGCATTTTCCTGAATACTAATATTGTTGACTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCTCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCA ...............................................................................................................................................((((((((.........((...((((....))))...)).........))))))))................................................... ..........................................................................................................................123..........................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | GSE20417(GSM514985) Colon and lung cancer pool. | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | SRR189784 | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin) | SRR189782 | TAX577739(Rovira) total RNA. (breast) | GSM1105750AGO3(GSM1105750) small RNA sequencing data. (ago3 hela) | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................GCTGGAGTGCAGTGGTGCGATCTCGGCTACCC | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TCTCCCAGGCTGGAGTGCAGTGGTGCGATGCC...... | 32 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................CAGTGATATTTATGAGTTTTAAA.......................................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................GCTCTGTCTCCCAGGCTGGAGCTC.................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................CAGAGTCTTGCTCTGTCTCCCAGGCTACC........................ | 29 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................GAGTCTTGCTCTGTCTCCCAGGCTGGGTA...................... | 29 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |